RNA–Protein interactions for RNA: ENST00000515418.1

CPNE4-213, Transcript of copine 4, humanhuman

TSL 5

Gene CPNE4, Length 1,958 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-213ENST00000515418 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.32□□□□□ -0.6
CPNE4-213ENST00000515418 FAM177BA6PVY3 158 aa11.32□□□□□ -0.6
CPNE4-213ENST00000515418 TRIM28Q13263 835 aaKnown RBP11.32□□□□□ -0.6
CPNE4-213ENST00000515418 NLRP10Q86W26 655 aa11.32□□□□□ -0.6
CPNE4-213ENST00000515418 NOP58Q9Y2X3 529 aaKnown RBP11.32□□□□□ -0.6
CPNE4-213ENST00000515418 CHMP3Q9Y3E7 222 aa11.32□□□□□ -0.6
CPNE4-213ENST00000515418 NHSQ6T4R5 1651 aa11.31□□□□□ -0.6
CPNE4-213ENST00000515418 ERVV-1B6SEH8 477 aa11.31□□□□□ -0.6
CPNE4-213ENST00000515418 RAB11FIP3O75154 756 aa11.31□□□□□ -0.6
CPNE4-213ENST00000515418 GSPT1P15170 499 aaKnown RBP11.31□□□□□ -0.6
CPNE4-213ENST00000515418 FAM196AQ6ZSG2 479 aa11.31□□□□□ -0.6
CPNE4-213ENST00000515418 CAMTA2O94983 1202 aa11.3□□□□□ -0.6
CPNE4-213ENST00000515418 PDE1AP54750 535 aa11.3□□□□□ -0.6
CPNE4-213ENST00000515418 RABL6Q3YEC7 729 aaPredicted RBP11.3□□□□□ -0.6
CPNE4-213ENST00000515418 AMIGO3Q86WK7 504 aa11.3□□□□□ -0.6
CPNE4-213ENST00000515418 CCDC85AQ96PX6 553 aaPredicted RBP11.3□□□□□ -0.6
CPNE4-213ENST00000515418 LRRC4BQ9NT99 713 aa11.3□□□□□ -0.6
CPNE4-213ENST00000515418 RGS17Q9UGC6 210 aaPredicted RBP11.3□□□□□ -0.6
CPNE4-213ENST00000515418 UBN2Q6ZU65 1347 aa11.3□□□□□ -0.6
CPNE4-213ENST00000515418 COL5A3P25940 1745 aaPredicted RBP11.3□□□□□ -0.6
CPNE4-213ENST00000515418 SASH1O94885 1247 aa11.3□□□□□ -0.6
CPNE4-213ENST00000515418 RFX5P48382 616 aaPredicted RBP11.3□□□□□ -0.6
CPNE4-213ENST00000515418 PTPN12Q05209 780 aaKnown RBP11.3□□□□□ -0.6
CPNE4-213ENST00000515418 G3BP1Q13283 466 aaKnown RBP eCLIP11.3□□□□□ -0.6
CPNE4-213ENST00000515418 BMP2KLQ5H9B9 411 aa11.3□□□□□ -0.6
CPNE4-213ENST00000515418 ZNF34Q8IZ26 560 aa11.3□□□□□ -0.6
CPNE4-213ENST00000515418 KIF1BPQ96EK5 621 aa11.3□□□□□ -0.6
CPNE4-213ENST00000515418 TRMT112Q9UI30 125 aaKnown RBP11.3□□□□□ -0.6
CPNE4-213ENST00000515418 PCCAP05165 728 aaPredicted RBP11.29□□□□□ -0.6
CPNE4-213ENST00000515418 RXRBP28702 533 aa11.29□□□□□ -0.6
CPNE4-213ENST00000515418 HSP90AB4PQ58FF6 505 aa11.29□□□□□ -0.6
CPNE4-213ENST00000515418 HSP90AB3PQ58FF7 597 aa11.29□□□□□ -0.6
CPNE4-213ENST00000515418 TTC22Q5TAA0 569 aa11.29□□□□□ -0.6
CPNE4-213ENST00000515418 ZBTB38Q8NAP3 1195 aaPredicted RBP11.29□□□□□ -0.6
CPNE4-213ENST00000515418 ZNF594Q96JF6 807 aaPredicted RBP11.29□□□□□ -0.6
CPNE4-213ENST00000515418 GNPATO15228 680 aa11.28□□□□□ -0.6
CPNE4-213ENST00000515418 MX1P20591 662 aa11.28□□□□□ -0.6
CPNE4-213ENST00000515418 SUSD4Q5VX71 490 aa11.28□□□□□ -0.6
CPNE4-213ENST00000515418 POTEAQ6S8J7 498 aa11.28□□□□□ -0.6
CPNE4-213ENST00000515418 COL15A1P39059 1388 aa11.28□□□□□ -0.6
CPNE4-213ENST00000515418 SALL3Q9BXA9 1300 aa11.28□□□□□ -0.6
CPNE4-213ENST00000515418 FBXO41Q8TF61 875 aa11.28□□□□□ -0.6
CPNE4-213ENST00000515418 SRP68Q9UHB9 627 aaKnown RBP11.28□□□□□ -0.6
CPNE4-213ENST00000515418 CNTNAP4Q9C0A0 1308 aa11.27□□□□□ -0.6
CPNE4-213ENST00000515418 RREB1Q92766 1687 aa11.27□□□□□ -0.6
CPNE4-213ENST00000515418 RPS6KA4O75676 772 aa11.27□□□□□ -0.61
CPNE4-213ENST00000515418 SDSP20132 328 aa11.27□□□□□ -0.61
CPNE4-213ENST00000515418 RC3H1Q5TC82 1133 aaKnown RBP11.27□□□□□ -0.61
CPNE4-213ENST00000515418 OSBPL3Q9H4L5 887 aa11.27□□□□□ -0.61
CPNE4-213ENST00000515418 COPRSQ9NQ92 184 aa11.27□□□□□ -0.61
CPNE4-213ENST00000515418 NIP7Q9Y221 180 aaKnown RBP eCLIP11.27□□□□□ -0.61
CPNE4-213ENST00000515418 ZNF831Q5JPB2 1677 aa11.27□□□□□ -0.61
CPNE4-213ENST00000515418 IRS4O14654 1257 aaPredicted RBP11.27□□□□□ -0.61
CPNE4-213ENST00000515418 PHF14O94880 888 aa11.27□□□□□ -0.61
CPNE4-213ENST00000515418 BICDL1Q6ZP65 573 aa11.27□□□□□ -0.61
CPNE4-213ENST00000515418 CICQ96RK0 1608 aaPredicted RBP11.27□□□□□ -0.61
CPNE4-213ENST00000515418 LY75O60449 1722 aa11.26□□□□□ -0.61
CPNE4-213ENST00000515418 ANKRD36CQ5JPF3 1778 aa11.26□□□□□ -0.61
CPNE4-213ENST00000515418 HCLS1P14317 486 aaPredicted RBP11.26□□□□□ -0.61
CPNE4-213ENST00000515418 TFCP2Q12800 502 aa11.26□□□□□ -0.61
CPNE4-213ENST00000515418 USPL1Q5W0Q7 1092 aa11.26□□□□□ -0.61
CPNE4-213ENST00000515418 ERC1Q8IUD2 1116 aa11.26□□□□□ -0.61
CPNE4-213ENST00000515418 PROM2Q8N271 834 aa11.26□□□□□ -0.61
CPNE4-213ENST00000515418 CLASRPQ8N2M8 674 aaKnown RBP11.26□□□□□ -0.61
CPNE4-213ENST00000515418 ARHGEF1Q92888 912 aaKnown RBP11.26□□□□□ -0.61
CPNE4-213ENST00000515418 EAF2Q96CJ1 260 aaPredicted RBP11.26□□□□□ -0.61
CPNE4-213ENST00000515418 PUS3Q9BZE2 481 aaKnown RBP11.26□□□□□ -0.61
CPNE4-213ENST00000515418 CCDC8Q9H0W5 538 aaPredicted RBP11.26□□□□□ -0.61
CPNE4-213ENST00000515418 STAP2Q9UGK3 403 aa11.26□□□□□ -0.61
CPNE4-213ENST00000515418 TAF1LQ8IZX4 1826 aa11.26□□□□□ -0.61
CPNE4-213ENST00000515418 MAP4K4O95819 1239 aaPredicted RBP11.25□□□□□ -0.61
CPNE4-213ENST00000515418 CSF1RP07333 972 aa11.25□□□□□ -0.61
CPNE4-213ENST00000515418 MFAP1P55081 439 aaKnown RBP11.25□□□□□ -0.61
CPNE4-213ENST00000515418 LRRC24Q50LG9 513 aa11.25□□□□□ -0.61
CPNE4-213ENST00000515418 TBC1D9Q6ZT07 1266 aa11.25□□□□□ -0.61
CPNE4-213ENST00000515418 AACSQ86V21 672 aa11.25□□□□□ -0.61
CPNE4-213ENST00000515418 TTLL11Q8NHH1 800 aa11.25□□□□□ -0.61
CPNE4-213ENST00000515418 BCL2L12Q9HB09 334 aa11.25□□□□□ -0.61
CPNE4-213ENST00000515418 RTCBQ9Y3I0 505 aaKnown RBP11.25□□□□□ -0.61
CPNE4-213ENST00000515418 CCDC57Q2TAC2 916 aa11.25□□□□□ -0.61
CPNE4-213ENST00000515418 ATG9AQ7Z3C6 839 aa11.25□□□□□ -0.61
CPNE4-213ENST00000515418 UTP14AQ9BVJ6 771 aaKnown RBP11.25□□□□□ -0.61
CPNE4-213ENST00000515418 PLA2G12BQ9BX93 195 aa11.25□□□□□ -0.61
CPNE4-213ENST00000515418 TLR7Q9NYK1 1049 aaKnown RBP11.25□□□□□ -0.61
CPNE4-213ENST00000515418 ZPR1O75312 459 aa11.24□□□□□ -0.61
CPNE4-213ENST00000515418 IFIT2P09913 472 aaKnown RBP11.24□□□□□ -0.61
CPNE4-213ENST00000515418 TBC1D9BQ66K14 1250 aa11.24□□□□□ -0.61
CPNE4-213ENST00000515418 RILPL2Q969X0 211 aa11.24□□□□□ -0.61
CPNE4-213ENST00000515418 GREM2Q9H772 168 aa11.24□□□□□ -0.61
CPNE4-213ENST00000515418 NARFQ9UHQ1 456 aa11.24□□□□□ -0.61
CPNE4-213ENST00000515418 CDHR2Q9BYE9 1310 aa11.24□□□□□ -0.61
CPNE4-213ENST00000515418 TRIM6-TRIM34B2RNG4 842 aa11.23□□□□□ -0.61
CPNE4-213ENST00000515418 APBA3O96018 575 aa11.23□□□□□ -0.61
CPNE4-213ENST00000515418 TRAPPC3LQ5T215 181 aa11.23□□□□□ -0.61
CPNE4-213ENST00000515418 CLEC4GQ6UXB4 293 aa11.23□□□□□ -0.61
CPNE4-213ENST00000515418 PI4K2BQ8TCG2 481 aa11.23□□□□□ -0.61
CPNE4-213ENST00000515418 AK7Q96M32 723 aa11.23□□□□□ -0.61
CPNE4-213ENST00000515418 ZNF652Q9Y2D9 606 aa11.23□□□□□ -0.61
CPNE4-213ENST00000515418 PDE8AO60658 829 aa11.23□□□□□ -0.61
CPNE4-213ENST00000515418 CDC45O75419 566 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms