RNA–Protein interactions for RNA: ENST00000515351.1

PCDH1-208, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 2,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-208ENST00000515351 ZSWIM6Q9HCJ5 1215 aa18.03■□□□□ 0.48
PCDH1-208ENST00000515351 TLR7Q9NYK1 1049 aaKnown RBP18.03■□□□□ 0.48
PCDH1-208ENST00000515351 PARP4Q9UKK3 1724 aaKnown RBP18.02■□□□□ 0.48
PCDH1-208ENST00000515351 DCAF5Q96JK2 942 aa18.02■□□□□ 0.48
PCDH1-208ENST00000515351 SNRKQ9NRH2 765 aa18.02■□□□□ 0.48
PCDH1-208ENST00000515351 SNRPA1P09661 255 aaKnown RBP18.01■□□□□ 0.47
PCDH1-208ENST00000515351 CSB-PGBD3P0DP91 1061 aa18.01■□□□□ 0.47
PCDH1-208ENST00000515351 TMEM94Q12767 1356 aa18.01■□□□□ 0.47
PCDH1-208ENST00000515351 ZSCAN22P10073 491 aaPredicted RBP18.01■□□□□ 0.47
PCDH1-208ENST00000515351 NMIQ13287 307 aaPredicted RBP18.01■□□□□ 0.47
PCDH1-208ENST00000515351 FOXD4L6Q3SYB3 417 aaPredicted RBP18.01■□□□□ 0.47
PCDH1-208ENST00000515351 EPHA10Q5JZY3 1008 aa18.01■□□□□ 0.47
PCDH1-208ENST00000515351 FOXD4L3Q6VB84 417 aaPredicted RBP18.01■□□□□ 0.47
PCDH1-208ENST00000515351 ANKRD13DQ6ZTN6 518 aa18.01■□□□□ 0.47
PCDH1-208ENST00000515351 KLHDC4Q8TBB5 520 aa18.01■□□□□ 0.47
PCDH1-208ENST00000515351 SYAP1Q96A49 352 aaPredicted RBP18.01■□□□□ 0.47
PCDH1-208ENST00000515351 FAM227BQ96M60 508 aa18.01■□□□□ 0.47
PCDH1-208ENST00000515351 PDRG1Q9NUG6 133 aa18.01■□□□□ 0.47
PCDH1-208ENST00000515351 CYP46A1Q9Y6A2 500 aa18.01■□□□□ 0.47
PCDH1-208ENST00000515351 GLI3P10071 1580 aa18.01■□□□□ 0.47
PCDH1-208ENST00000515351 LARGE1O95461 756 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 USP48Q86UV5 1035 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 TTC5Q8N0Z6 440 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 TMEM87AQ8NBN3 555 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 GDPD2Q9HCC8 539 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 SMC3Q9UQE7 1217 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 USP16Q9Y5T5 823 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 TNS3Q68CZ2 1445 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 CYP27B1O15528 508 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 STX6O43752 255 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 ZKSCAN1P17029 563 aaPredicted RBP18■□□□□ 0.47
PCDH1-208ENST00000515351 SYT1P21579 422 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 MAP4K1Q92918 833 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 PDLIM2Q96JY6 352 aa18■□□□□ 0.47
PCDH1-208ENST00000515351 RBM8AQ9Y5S9 174 aaKnown RBP18■□□□□ 0.47
PCDH1-208ENST00000515351 CABLES1Q8TDN4 633 aa17.99■□□□□ 0.47
PCDH1-208ENST00000515351 ZSCAN31Q96LW9 406 aaPredicted RBP17.99■□□□□ 0.47
PCDH1-208ENST00000515351 GADD45BO75293 160 aaPredicted RBP17.99■□□□□ 0.47
PCDH1-208ENST00000515351 CREB3L3Q68CJ9 461 aa17.99■□□□□ 0.47
PCDH1-208ENST00000515351 FMNL2Q96PY5 1086 aa17.99■□□□□ 0.47
PCDH1-208ENST00000515351 BOLA2Q9H3K6 86 aa17.99■□□□□ 0.47
PCDH1-208ENST00000515351 SH2B1Q9NRF2 756 aaPredicted RBP17.99■□□□□ 0.47
PCDH1-208ENST00000515351 ZSCAN30Q86W11 494 aa17.98■□□□□ 0.47
PCDH1-208ENST00000515351 COPRSQ9NQ92 184 aa17.98■□□□□ 0.47
PCDH1-208ENST00000515351 COL15A1P39059 1388 aa17.98■□□□□ 0.47
PCDH1-208ENST00000515351 CHRNA2Q15822 529 aa17.98■□□□□ 0.47
PCDH1-208ENST00000515351 FSD1Q9BTV5 496 aa17.98■□□□□ 0.47
PCDH1-208ENST00000515351 MED23Q9ULK4 1368 aa17.98■□□□□ 0.47
PCDH1-208ENST00000515351 A0A0D9SFI3 127 aa17.97■□□□□ 0.47
PCDH1-208ENST00000515351 HS1BP3Q53T59 392 aa17.97■□□□□ 0.47
PCDH1-208ENST00000515351 CCDC83Q8IWF9 413 aa17.97■□□□□ 0.47
PCDH1-208ENST00000515351 KCNJ4P48050 445 aa17.97■□□□□ 0.47
PCDH1-208ENST00000515351 F13A1P00488 732 aa17.96■□□□□ 0.47
PCDH1-208ENST00000515351 RFX5P48382 616 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-208ENST00000515351 PIP4K2AP48426 406 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-208ENST00000515351 CNPY2Q9Y2B0 182 aa17.96■□□□□ 0.47
PCDH1-208ENST00000515351 SLC27A2O14975 620 aa17.96■□□□□ 0.47
PCDH1-208ENST00000515351 PHF14O94880 888 aa17.96■□□□□ 0.47
PCDH1-208ENST00000515351 GJB2P29033 226 aa17.96■□□□□ 0.47
PCDH1-208ENST00000515351 RABL6Q3YEC7 729 aaPredicted RBP17.96■□□□□ 0.47
PCDH1-208ENST00000515351 ATP6V1DQ9Y5K8 247 aa17.96■□□□□ 0.47
PCDH1-208ENST00000515351 CPDO75976 1380 aa17.96■□□□□ 0.47
PCDH1-208ENST00000515351 JCADQ9P266 1359 aa17.96■□□□□ 0.47
PCDH1-208ENST00000515351 TSPY26PQ9H489 355 aa17.95■□□□□ 0.46
PCDH1-208ENST00000515351 UBR2Q8IWV8 1755 aa17.95■□□□□ 0.46
PCDH1-208ENST00000515351 PSMA5P28066 241 aa17.95■□□□□ 0.46
PCDH1-208ENST00000515351 PTPN12Q05209 780 aaKnown RBP17.95■□□□□ 0.46
PCDH1-208ENST00000515351 ME3Q16798 604 aa17.95■□□□□ 0.46
PCDH1-208ENST00000515351 UBE3BQ7Z3V4 1068 aa17.95■□□□□ 0.46
PCDH1-208ENST00000515351 NUP188Q5SRE5 1749 aa17.95■□□□□ 0.46
PCDH1-208ENST00000515351 CABP4P57796 275 aa17.94■□□□□ 0.46
PCDH1-208ENST00000515351 ST3GAL1Q11201 340 aa17.94■□□□□ 0.46
PCDH1-208ENST00000515351 RNF20Q5VTR2 975 aa17.94■□□□□ 0.46
PCDH1-208ENST00000515351 CADPS2Q86UW7 1296 aa17.94■□□□□ 0.46
PCDH1-208ENST00000515351 JARID2Q92833 1246 aaPredicted RBP17.94■□□□□ 0.46
PCDH1-208ENST00000515351 NAP1L5Q96NT1 182 aaPredicted RBP17.94■□□□□ 0.46
PCDH1-208ENST00000515351 SPATA31A3Q5VYP0 1347 aa17.94■□□□□ 0.46
PCDH1-208ENST00000515351 DDX54Q8TDD1 881 aaKnown RBP17.94■□□□□ 0.46
PCDH1-208ENST00000515351 DBNLQ9UJU6 430 aaKnown RBP17.94■□□□□ 0.46
PCDH1-208ENST00000515351 ATP5JP18859 108 aa17.93■□□□□ 0.46
PCDH1-208ENST00000515351 TNNI3KQ59H18 835 aa17.93■□□□□ 0.46
PCDH1-208ENST00000515351 TPCN1Q9ULQ1 816 aa17.93■□□□□ 0.46
PCDH1-208ENST00000515351 FPGT-TNNI3KV9GXZ4 949 aa17.93■□□□□ 0.46
PCDH1-208ENST00000515351 PLBD2Q8NHP8 589 aa17.93■□□□□ 0.46
PCDH1-208ENST00000515351 MTMR6Q9Y217 621 aa17.93■□□□□ 0.46
PCDH1-208ENST00000515351 ATP5J2-PTCD1G3V325 749 aa17.92■□□□□ 0.46
PCDH1-208ENST00000515351 PTCD1O75127 700 aaKnown RBP17.92■□□□□ 0.46
PCDH1-208ENST00000515351 UBE2HP62256 183 aa17.92■□□□□ 0.46
PCDH1-208ENST00000515351 TFCP2Q12800 502 aa17.92■□□□□ 0.46
PCDH1-208ENST00000515351 ZNF589Q86UQ0 364 aaPredicted RBP17.92■□□□□ 0.46
PCDH1-208ENST00000515351 RNF214Q8ND24 703 aa17.92■□□□□ 0.46
PCDH1-208ENST00000515351 XIRP1Q702N8 1843 aaKnown RBP17.92■□□□□ 0.46
PCDH1-208ENST00000515351 A0A087WZG4 1122 aa17.92■□□□□ 0.46
PCDH1-208ENST00000515351 MSNP26038 577 aaKnown RBP17.92■□□□□ 0.46
PCDH1-208ENST00000515351 CASP7P55210 303 aa17.92■□□□□ 0.46
PCDH1-208ENST00000515351 TJP1Q07157 1748 aa17.92■□□□□ 0.46
PCDH1-208ENST00000515351 NECAB1Q8N987 351 aa17.91■□□□□ 0.46
PCDH1-208ENST00000515351 EDC3Q96F86 508 aaKnown RBP17.91■□□□□ 0.46
PCDH1-208ENST00000515351 HMG20BQ9P0W2 317 aa17.91■□□□□ 0.46
PCDH1-208ENST00000515351 RFX7Q2KHR2 1363 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms