RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SCAF8Q9UPN6 1271 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-219ENST00000514096 CNTNAP4Q9C0A0 1308 aa9.93□□□□□ -0.82
LIMCH1-219ENST00000514096 SNAP23O00161 211 aa9.93□□□□□ -0.82
LIMCH1-219ENST00000514096 C3orf67Q6ZVT6 689 aa9.93□□□□□ -0.82
LIMCH1-219ENST00000514096 TNNQ9UQP3 1299 aa9.93□□□□□ -0.82
LIMCH1-219ENST00000514096 MYH16Q9H6N6 1097 aa9.93□□□□□ -0.82
LIMCH1-219ENST00000514096 RC3H1Q5TC82 1133 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 GPBP1L1Q9HC44 474 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 FBXO3Q9UK99 471 aa9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 CLEC11AQ9Y240 323 aa9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 BCAR3O75815 825 aa9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 HTRA3P83110 453 aa9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 EAPPQ56P03 285 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 TTLL6Q8N841 843 aa9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 NLRP3Q96P20 1036 aa9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 RGPD1P0DJD0 1748 aa9.92□□□□□ -0.82
LIMCH1-219ENST00000514096 HTATSF1O43719 755 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 CNPY4Q8N129 248 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 SEC31BQ9NQW1 1179 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 DDX21Q9NR30 783 aaKnown RBP eCLIP9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 SBF2Q86WG5 1849 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 ANP32AP39687 249 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 C9orf131Q5VYM1 1079 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 UTP14AQ9BVJ6 771 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 SIL1Q9H173 461 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 IFT57Q9NWB7 429 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 ANKIB1Q9P2G1 1089 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 IQSEC3Q9UPP2 1182 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 CEMIPQ8WUJ3 1361 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 E9PSI1 815 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 FLIIQ13045 1269 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 MAP3K15Q6ZN16 1313 aa9.91□□□□□ -0.82
LIMCH1-219ENST00000514096 DDX58O95786 925 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-219ENST00000514096 PRPF40BQ6NWY9 871 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-219ENST00000514096 MYH14Q7Z406 1995 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-219ENST00000514096 ADRA2BP18089 450 aa9.9□□□□□ -0.82
LIMCH1-219ENST00000514096 SGIP1Q9BQI5 828 aa9.9□□□□□ -0.82
LIMCH1-219ENST00000514096 C1orf115Q9H7X2 142 aa9.9□□□□□ -0.82
LIMCH1-219ENST00000514096 UBN2Q6ZU65 1347 aa9.9□□□□□ -0.82
LIMCH1-219ENST00000514096 ITGB4P16144 1822 aa9.9□□□□□ -0.82
LIMCH1-219ENST00000514096 WTIPA6NIX2 430 aaPredicted RBP9.9□□□□□ -0.83
LIMCH1-219ENST00000514096 IRS4O14654 1257 aaPredicted RBP9.9□□□□□ -0.83
LIMCH1-219ENST00000514096 TNS1Q9HBL0 1735 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 DOK7Q18PE1 504 aa9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 PPP1R42Q7Z4L9 355 aa9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 TOGARAM1Q9Y4F4 1720 aa9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 PDIA6Q15084 440 aa9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 GIGYF2Q6Y7W6 1299 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 DDX46Q7L014 1031 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 KLHDC4Q8TBB5 520 aa9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 SSH1Q8WYL5 1049 aa9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 ZNF594Q96JF6 807 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 NMRK2Q9NPI5 230 aa9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 ZNF408Q9H9D4 720 aa9.89□□□□□ -0.83
LIMCH1-219ENST00000514096 FRAT2O75474 233 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-219ENST00000514096 APPP05067 770 aa9.88□□□□□ -0.83
LIMCH1-219ENST00000514096 PDE6BP35913 854 aa9.88□□□□□ -0.83
LIMCH1-219ENST00000514096 ZNF784Q8NCA9 323 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-219ENST00000514096 SECISBP2LQ93073 1101 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-219ENST00000514096 HYPKQ9NX55 129 aa9.88□□□□□ -0.83
LIMCH1-219ENST00000514096 ZHX1Q9UKY1 873 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-219ENST00000514096 ANKRD26Q9UPS8 1709 aa9.88□□□□□ -0.83
LIMCH1-219ENST00000514096 RAD17O75943 681 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 LARGE2Q8N3Y3 721 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 F8W031 263 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 VAMP4O75379 141 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 TM4SF1P30408 202 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 KCNJ4P48050 445 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 NLRP10Q86W26 655 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 FTSJ3Q8IY81 847 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 C16orf71Q8IYS4 520 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 DBNDD1Q9H9R9 158 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 NOB1Q9ULX3 412 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 CD2APQ9Y5K6 639 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 SH3TC1Q8TE82 1336 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 TAF5LO75529 589 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 TCIRG1Q13488 830 aa9.87□□□□□ -0.83
LIMCH1-219ENST00000514096 GRIN3BO60391 1043 aa9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 ECM2O94769 699 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 DDNO94850 711 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 CELF1Q92879 486 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 RRAGCQ9HB90 399 aa9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 ABCC12Q96J65 1359 aa9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 NHSQ6T4R5 1651 aa9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 ITPRIPQ8IWB1 547 aa9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 DNAAF4Q8WXU2 420 aa9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 CWC25Q9NXE8 425 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-219ENST00000514096 PPIP5K2O43314 1243 aa9.85□□□□□ -0.83
LIMCH1-219ENST00000514096 AOC3Q16853 763 aa9.85□□□□□ -0.83
LIMCH1-219ENST00000514096 C4BP0C0L5 1744 aa9.85□□□□□ -0.83
LIMCH1-219ENST00000514096 PLBD2Q8NHP8 589 aa9.85□□□□□ -0.83
LIMCH1-219ENST00000514096 JDP2Q8WYK2 163 aa9.85□□□□□ -0.83
LIMCH1-219ENST00000514096 MPHOSPH8Q99549 860 aa9.85□□□□□ -0.83
LIMCH1-219ENST00000514096 FAM161AQ3B820 660 aa9.85□□□□□ -0.83
LIMCH1-219ENST00000514096 BRIP1Q9BX63 1249 aa9.85□□□□□ -0.83
LIMCH1-219ENST00000514096 TAOK3Q9H2K8 898 aa9.84□□□□□ -0.83
LIMCH1-219ENST00000514096 LMBR1LQ6UX01 489 aa9.84□□□□□ -0.83
LIMCH1-219ENST00000514096 DPP8Q6V1X1 898 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-219ENST00000514096 PANK1Q8TE04 598 aa9.84□□□□□ -0.83
LIMCH1-219ENST00000514096 NYXQ9GZU5 481 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms