RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 TRAF5O00463 557 aa14.72□□□□□ -0.05
DDX41-216ENST00000513562 PER1O15534 1290 aaPredicted RBP14.72□□□□□ -0.05
DDX41-216ENST00000513562 GRM1Q13255 1194 aa14.72□□□□□ -0.05
DDX41-216ENST00000513562 TSKSQ9UJT2 592 aa14.72□□□□□ -0.05
DDX41-216ENST00000513562 CA12O43570 354 aa14.71□□□□□ -0.05
DDX41-216ENST00000513562 AOC2O75106 756 aa14.71□□□□□ -0.05
DDX41-216ENST00000513562 CC2D1BQ5T0F9 858 aaKnown RBP14.71□□□□□ -0.05
DDX41-216ENST00000513562 PHACTR3Q96KR7 559 aa14.71□□□□□ -0.05
DDX41-216ENST00000513562 MCOLN1Q9GZU1 580 aa14.71□□□□□ -0.05
DDX41-216ENST00000513562 KIF7Q2M1P5 1343 aa14.7□□□□□ -0.06
DDX41-216ENST00000513562 RIC1Q4ADV7 1423 aa14.7□□□□□ -0.06
DDX41-216ENST00000513562 GTF2E1P29083 439 aaPredicted RBP14.7□□□□□ -0.06
DDX41-216ENST00000513562 HLFQ16534 295 aa14.7□□□□□ -0.06
DDX41-216ENST00000513562 GRIPAP1Q4V328 841 aa14.7□□□□□ -0.06
DDX41-216ENST00000513562 LARGE2Q8N3Y3 721 aa14.7□□□□□ -0.06
DDX41-216ENST00000513562 HOXA10P31260 410 aaPredicted RBP14.69□□□□□ -0.06
DDX41-216ENST00000513562 SAPCD2Q86UD0 394 aa14.69□□□□□ -0.06
DDX41-216ENST00000513562 HHIPL1Q96JK4 782 aa14.69□□□□□ -0.06
DDX41-216ENST00000513562 NYXQ9GZU5 481 aa14.69□□□□□ -0.06
DDX41-216ENST00000513562 RSPH6AQ9H0K4 717 aa14.69□□□□□ -0.06
DDX41-216ENST00000513562 PRKAR2BP31323 418 aa14.68□□□□□ -0.06
DDX41-216ENST00000513562 BRPF1P55201 1214 aaPredicted RBP14.68□□□□□ -0.06
DDX41-216ENST00000513562 TRIM26Q12899 539 aaPredicted RBP14.68□□□□□ -0.06
DDX41-216ENST00000513562 NUTM1Q86Y26 1132 aa14.68□□□□□ -0.06
DDX41-216ENST00000513562 ADARB2Q9NS39 739 aaKnown RBP14.68□□□□□ -0.06
DDX41-216ENST00000513562 IBTKQ9P2D0 1353 aaPredicted RBP14.68□□□□□ -0.06
DDX41-216ENST00000513562 NPC1L1Q9UHC9 1359 aa14.68□□□□□ -0.06
DDX41-216ENST00000513562 SLC51AQ86UW1 340 aa14.67□□□□□ -0.06
DDX41-216ENST00000513562 NIM1KQ8IY84 436 aa14.67□□□□□ -0.06
DDX41-216ENST00000513562 RPGRQ92834 1020 aaKnown RBP14.67□□□□□ -0.06
DDX41-216ENST00000513562 CFAP44Q96MT7 982 aa14.67□□□□□ -0.06
DDX41-216ENST00000513562 GPRC5DQ9NZD1 345 aa14.67□□□□□ -0.06
DDX41-216ENST00000513562 ERVV-1B6SEH8 477 aa14.66□□□□□ -0.06
DDX41-216ENST00000513562 PPEF1O14829 653 aaPredicted RBP14.66□□□□□ -0.06
DDX41-216ENST00000513562 CELF2O95319 508 aaKnown RBP14.66□□□□□ -0.06
DDX41-216ENST00000513562 MCM10Q7L590 875 aa14.66□□□□□ -0.06
DDX41-216ENST00000513562 PPIP5K2O43314 1243 aa14.65□□□□□ -0.06
DDX41-216ENST00000513562 RTF1Q92541 710 aaKnown RBP14.65□□□□□ -0.06
DDX41-216ENST00000513562 CRAMP1Q96RY5 1269 aa14.65□□□□□ -0.06
DDX41-216ENST00000513562 PGAP2Q9UHJ9 254 aa14.65□□□□□ -0.06
DDX41-216ENST00000513562 TNRC18O15417 2968 aaPredicted RBP14.65□□□□□ -0.06
DDX41-216ENST00000513562 DGKZQ13574 1117 aa14.64□□□□□ -0.07
DDX41-216ENST00000513562 RBM17Q96I25 401 aaKnown RBP14.64□□□□□ -0.07
DDX41-216ENST00000513562 GLIS2Q9BZE0 524 aaPredicted RBP14.64□□□□□ -0.07
DDX41-216ENST00000513562 VPS33BQ9H267 617 aa14.64□□□□□ -0.07
DDX41-216ENST00000513562 MAP3K15Q6ZN16 1313 aa14.64□□□□□ -0.07
DDX41-216ENST00000513562 UBN2Q6ZU65 1347 aa14.64□□□□□ -0.07
DDX41-216ENST00000513562 CDHR2Q9BYE9 1310 aa14.64□□□□□ -0.07
DDX41-216ENST00000513562 CXCL9Q07325 125 aa14.63□□□□□ -0.07
DDX41-216ENST00000513562 AOC3Q16853 763 aa14.63□□□□□ -0.07
DDX41-216ENST00000513562 CIAPIN1Q6FI81 312 aa14.63□□□□□ -0.07
DDX41-216ENST00000513562 HTATSF1O43719 755 aaKnown RBP14.62□□□□□ -0.07
DDX41-216ENST00000513562 GMPSP49915 693 aaPredicted RBP14.62□□□□□ -0.07
DDX41-216ENST00000513562 DCTN1Q14203 1278 aa14.62□□□□□ -0.07
DDX41-216ENST00000513562 SUSD4Q5VX71 490 aa14.62□□□□□ -0.07
DDX41-216ENST00000513562 C3orf67Q6ZVT6 689 aa14.62□□□□□ -0.07
DDX41-216ENST00000513562 ZC3H15Q8WU90 426 aaKnown RBP14.62□□□□□ -0.07
DDX41-216ENST00000513562 ZNRF3Q9ULT6 936 aa14.62□□□□□ -0.07
DDX41-216ENST00000513562 TCERG1O14776 1098 aaKnown RBP14.61□□□□□ -0.07
DDX41-216ENST00000513562 NTSR2O95665 410 aa14.61□□□□□ -0.07
DDX41-216ENST00000513562 GPTP24298 496 aa14.61□□□□□ -0.07
DDX41-216ENST00000513562 NOGQ13253 232 aa14.61□□□□□ -0.07
DDX41-216ENST00000513562 KIF6Q6ZMV9 814 aa14.61□□□□□ -0.07
DDX41-216ENST00000513562 TTLL7Q6ZT98 887 aa14.61□□□□□ -0.07
DDX41-216ENST00000513562 RTFDC1Q9BY42 306 aaPredicted RBP14.61□□□□□ -0.07
DDX41-216ENST00000513562 ATP6V0A2Q9Y487 856 aa14.61□□□□□ -0.07
DDX41-216ENST00000513562 TRPM7Q96QT4 1865 aa14.61□□□□□ -0.07
DDX41-216ENST00000513562 HIRAP54198 1017 aaPredicted RBP14.6□□□□□ -0.07
DDX41-216ENST00000513562 TAF7Q15545 349 aaPredicted RBP14.6□□□□□ -0.07
DDX41-216ENST00000513562 ZNF34Q8IZ26 560 aa14.6□□□□□ -0.07
DDX41-216ENST00000513562 NGEFQ8N5V2 710 aa14.6□□□□□ -0.07
DDX41-216ENST00000513562 CFAP53Q96M91 514 aa14.6□□□□□ -0.07
DDX41-216ENST00000513562 ZNF408Q9H9D4 720 aa14.6□□□□□ -0.07
DDX41-216ENST00000513562 CDC37L1Q7L3B6 337 aa14.59□□□□□ -0.07
DDX41-216ENST00000513562 SUPT20HQ8NEM7 779 aa14.59□□□□□ -0.07
DDX41-216ENST00000513562 ZIC5Q96T25 663 aa14.59□□□□□ -0.07
DDX41-216ENST00000513562 PCGF6Q9BYE7 350 aa14.59□□□□□ -0.07
DDX41-216ENST00000513562 TMX4Q9H1E5 349 aaPredicted RBP14.59□□□□□ -0.07
DDX41-216ENST00000513562 NUDCQ9Y266 331 aa14.59□□□□□ -0.07
DDX41-216ENST00000513562 LAMB4A4D0S4 1761 aa14.59□□□□□ -0.07
DDX41-216ENST00000513562 U2AF1L5P0DN76 240 aaPredicted RBP14.58□□□□□ -0.08
DDX41-216ENST00000513562 U2AF1Q01081 240 aaKnown RBP eCLIP14.58□□□□□ -0.08
DDX41-216ENST00000513562 KIAA2012Q0VF49 1180 aa14.58□□□□□ -0.08
DDX41-216ENST00000513562 CNGB1Q14028 1251 aaPredicted RBP14.58□□□□□ -0.08
DDX41-216ENST00000513562 TRPM4Q8TD43 1214 aa14.58□□□□□ -0.08
DDX41-216ENST00000513562 ZBTB3Q9H5J0 574 aa14.58□□□□□ -0.08
DDX41-216ENST00000513562 MIS18AQ9NYP9 233 aa14.58□□□□□ -0.08
DDX41-216ENST00000513562 ABCC4O15439 1325 aa14.58□□□□□ -0.08
DDX41-216ENST00000513562 HUNKP57058 714 aa14.57□□□□□ -0.08
DDX41-216ENST00000513562 NLRP3Q96P20 1036 aa14.57□□□□□ -0.08
DDX41-216ENST00000513562 BCL2L13Q9BXK5 485 aa14.57□□□□□ -0.08
DDX41-216ENST00000513562 SAGE1Q9NXZ1 904 aa14.57□□□□□ -0.08
DDX41-216ENST00000513562 RRP7AQ9Y3A4 280 aaKnown RBP14.57□□□□□ -0.08
DDX41-216ENST00000513562 RAD17O75943 681 aa14.56□□□□□ -0.08
DDX41-216ENST00000513562 TNIP1Q15025 636 aa14.56□□□□□ -0.08
DDX41-216ENST00000513562 PARP10Q53GL7 1025 aa14.56□□□□□ -0.08
DDX41-216ENST00000513562 SLC10A5Q5PT55 438 aa14.56□□□□□ -0.08
DDX41-216ENST00000513562 DPP8Q6V1X1 898 aaPredicted RBP14.56□□□□□ -0.08
DDX41-216ENST00000513562 GIGYF2Q6Y7W6 1299 aaKnown RBP14.56□□□□□ -0.08
DDX41-216ENST00000513562 PPP1R42Q7Z4L9 355 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms