RNA–Protein interactions for RNA: ENST00000512665.5

NEDD9-213, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-213ENST00000512665 NBPF5PQ86XG9 351 aaPredicted RBP13.56□□□□□ -0.24
NEDD9-213ENST00000512665 TEX13AQ9BXU3 409 aaPredicted RBP13.56□□□□□ -0.24
NEDD9-213ENST00000512665 ZNF408Q9H9D4 720 aa13.56□□□□□ -0.24
NEDD9-213ENST00000512665 FBXO46Q6PJ61 603 aaPredicted RBP13.55□□□□□ -0.24
NEDD9-213ENST00000512665 LARGE2Q8N3Y3 721 aa13.55□□□□□ -0.24
NEDD9-213ENST00000512665 RBBP6Q7Z6E9 1792 aaKnown RBP13.55□□□□□ -0.24
NEDD9-213ENST00000512665 SLC10A3P09131 477 aa13.54□□□□□ -0.24
NEDD9-213ENST00000512665 CRY2Q49AN0 593 aa13.54□□□□□ -0.24
NEDD9-213ENST00000512665 AEBP1Q8IUX7 1158 aa13.54□□□□□ -0.24
NEDD9-213ENST00000512665 CSRNP1Q96S65 589 aa13.54□□□□□ -0.24
NEDD9-213ENST00000512665 VPS33BQ9H267 617 aa13.54□□□□□ -0.24
NEDD9-213ENST00000512665 RNMTO43148 476 aaKnown RBP13.53□□□□□ -0.24
NEDD9-213ENST00000512665 TPTE2Q6XPS3 522 aa13.53□□□□□ -0.24
NEDD9-213ENST00000512665 NIM1KQ8IY84 436 aa13.53□□□□□ -0.24
NEDD9-213ENST00000512665 LGR6Q9HBX8 967 aa13.53□□□□□ -0.24
NEDD9-213ENST00000512665 NPC1L1Q9UHC9 1359 aa13.53□□□□□ -0.24
NEDD9-213ENST00000512665 COL6A3P12111 3177 aa13.52□□□□□ -0.24
NEDD9-213ENST00000512665 NEUROD1Q13562 356 aa13.52□□□□□ -0.25
NEDD9-213ENST00000512665 SLC17A8Q8NDX2 589 aa13.52□□□□□ -0.25
NEDD9-213ENST00000512665 GBA2Q9HCG7 927 aaPredicted RBP13.52□□□□□ -0.25
NEDD9-213ENST00000512665 HDAC9Q9UKV0 1011 aa13.52□□□□□ -0.25
NEDD9-213ENST00000512665 HEG1Q9ULI3 1381 aa13.52□□□□□ -0.25
NEDD9-213ENST00000512665 RIC1Q4ADV7 1423 aa13.51□□□□□ -0.25
NEDD9-213ENST00000512665 KIF7Q2M1P5 1343 aa13.51□□□□□ -0.25
NEDD9-213ENST00000512665 ZNF157P51786 506 aaPredicted RBP13.51□□□□□ -0.25
NEDD9-213ENST00000512665 HIRAP54198 1017 aaPredicted RBP13.51□□□□□ -0.25
NEDD9-213ENST00000512665 INTS3Q68E01 1043 aaKnown RBP13.51□□□□□ -0.25
NEDD9-213ENST00000512665 NPM2Q86SE8 214 aaKnown RBP13.51□□□□□ -0.25
NEDD9-213ENST00000512665 C2orf69Q8N8R5 385 aa13.51□□□□□ -0.25
NEDD9-213ENST00000512665 ZNF652Q9Y2D9 606 aa13.51□□□□□ -0.25
NEDD9-213ENST00000512665 BRCA2P51587 3418 aa13.5□□□□□ -0.25
NEDD9-213ENST00000512665 GMPSP49915 693 aaPredicted RBP13.5□□□□□ -0.25
NEDD9-213ENST00000512665 CXCL9Q07325 125 aa13.5□□□□□ -0.25
NEDD9-213ENST00000512665 DZIP3Q86Y13 1208 aaKnown RBP13.5□□□□□ -0.25
NEDD9-213ENST00000512665 TTC5Q8N0Z6 440 aa13.5□□□□□ -0.25
NEDD9-213ENST00000512665 ZNF296Q8WUU4 475 aaPredicted RBP13.5□□□□□ -0.25
NEDD9-213ENST00000512665 COLQQ9Y215 455 aaPredicted RBP13.5□□□□□ -0.25
NEDD9-213ENST00000512665 TRIOBPQ9H2D6 2365 aa13.49□□□□□ -0.25
NEDD9-213ENST00000512665 HOXA10P31260 410 aaPredicted RBP13.49□□□□□ -0.25
NEDD9-213ENST00000512665 SULT6B1Q6IMI4 303 aa13.49□□□□□ -0.25
NEDD9-213ENST00000512665 ZNRF3Q9ULT6 936 aa13.49□□□□□ -0.25
NEDD9-213ENST00000512665 ZNF330Q9Y3S2 320 aaPredicted RBP13.49□□□□□ -0.25
NEDD9-213ENST00000512665 CENPFP49454 3210 aa13.48□□□□□ -0.25
NEDD9-213ENST00000512665 TRPM4Q8TD43 1214 aa13.48□□□□□ -0.25
NEDD9-213ENST00000512665 ZNF496Q96IT1 587 aaPredicted RBP13.48□□□□□ -0.25
NEDD9-213ENST00000512665 RANBP2P49792 3224 aaKnown RBP13.47□□□□□ -0.25
NEDD9-213ENST00000512665 PPIP5K2O43314 1243 aa13.47□□□□□ -0.25
NEDD9-213ENST00000512665 MNX1P50219 401 aaPredicted RBP13.47□□□□□ -0.25
NEDD9-213ENST00000512665 USP48Q86UV5 1035 aa13.47□□□□□ -0.25
NEDD9-213ENST00000512665 ZNF790Q6PG37 636 aa13.46□□□□□ -0.25
NEDD9-213ENST00000512665 KRT26Q7Z3Y9 468 aa13.46□□□□□ -0.25
NEDD9-213ENST00000512665 CFHR5Q9BXR6 569 aa13.46□□□□□ -0.25
NEDD9-213ENST00000512665 PITPNM2Q9BZ72 1349 aa13.45□□□□□ -0.26
NEDD9-213ENST00000512665 POTEFA5A3E0 1075 aa13.45□□□□□ -0.26
NEDD9-213ENST00000512665 A1BGP04217 495 aa13.45□□□□□ -0.26
NEDD9-213ENST00000512665 TNIP1Q15025 636 aa13.45□□□□□ -0.26
NEDD9-213ENST00000512665 RASAL3Q86YV0 1011 aa13.45□□□□□ -0.26
NEDD9-213ENST00000512665 RTFDC1Q9BY42 306 aaPredicted RBP13.45□□□□□ -0.26
NEDD9-213ENST00000512665 SIPA1L3O60292 1781 aaPredicted RBP13.45□□□□□ -0.26
NEDD9-213ENST00000512665 GPR25O00155 361 aa13.44□□□□□ -0.26
NEDD9-213ENST00000512665 AOC3Q16853 763 aa13.44□□□□□ -0.26
NEDD9-213ENST00000512665 SUPT20HQ8NEM7 779 aa13.44□□□□□ -0.26
NEDD9-213ENST00000512665 OTUD5Q96G74 571 aa13.44□□□□□ -0.26
NEDD9-213ENST00000512665 CRAMP1Q96RY5 1269 aa13.44□□□□□ -0.26
NEDD9-213ENST00000512665 NIP7Q9Y221 180 aaKnown RBP eCLIP13.44□□□□□ -0.26
NEDD9-213ENST00000512665 PAPPA2Q9BXP8 1791 aa13.44□□□□□ -0.26
NEDD9-213ENST00000512665 ABCC12Q96J65 1359 aa13.44□□□□□ -0.26
NEDD9-213ENST00000512665 IBTKQ9P2D0 1353 aaPredicted RBP13.44□□□□□ -0.26
NEDD9-213ENST00000512665 H7C1D1 291 aa13.43□□□□□ -0.26
NEDD9-213ENST00000512665 TNNT2P45379 298 aaPredicted RBP13.43□□□□□ -0.26
NEDD9-213ENST00000512665 FKBP1BP68106 108 aa13.43□□□□□ -0.26
NEDD9-213ENST00000512665 DPF2Q92785 391 aa13.43□□□□□ -0.26
NEDD9-213ENST00000512665 BCL2L13Q9BXK5 485 aa13.43□□□□□ -0.26
NEDD9-213ENST00000512665 CNOT7Q9UIV1 285 aaKnown RBP13.43□□□□□ -0.26
NEDD9-213ENST00000512665 CEP290O15078 2479 aa13.42□□□□□ -0.26
NEDD9-213ENST00000512665 PPEF1O14829 653 aaPredicted RBP13.42□□□□□ -0.26
NEDD9-213ENST00000512665 IL13P35225 146 aa13.42□□□□□ -0.26
NEDD9-213ENST00000512665 RPGRQ92834 1020 aaKnown RBP13.42□□□□□ -0.26
NEDD9-213ENST00000512665 FMNL2Q96PY5 1086 aa13.42□□□□□ -0.26
NEDD9-213ENST00000512665 NYXQ9GZU5 481 aa13.42□□□□□ -0.26
NEDD9-213ENST00000512665 FKTNO75072 461 aa13.41□□□□□ -0.26
NEDD9-213ENST00000512665 TBC1D8O95759 1140 aa13.41□□□□□ -0.26
NEDD9-213ENST00000512665 KIAA2012Q0VF49 1180 aa13.41□□□□□ -0.26
NEDD9-213ENST00000512665 DLK2Q6UY11 383 aa13.41□□□□□ -0.26
NEDD9-213ENST00000512665 MICALL2Q8IY33 904 aa13.41□□□□□ -0.26
NEDD9-213ENST00000512665 KIAA0100Q14667 2235 aaKnown RBP13.4□□□□□ -0.26
NEDD9-213ENST00000512665 GTF2E1P29083 439 aaPredicted RBP13.4□□□□□ -0.26
NEDD9-213ENST00000512665 TM4SF4P48230 202 aa13.4□□□□□ -0.26
NEDD9-213ENST00000512665 DCPSQ96C86 337 aaKnown RBP13.4□□□□□ -0.26
NEDD9-213ENST00000512665 ATP6V0A2Q9Y487 856 aa13.4□□□□□ -0.26
NEDD9-213ENST00000512665 ADM5C9JUS6 153 aa13.39□□□□□ -0.27
NEDD9-213ENST00000512665 MTHFSDQ2M296 383 aaKnown RBP13.39□□□□□ -0.27
NEDD9-213ENST00000512665 ARMC5Q96C12 935 aa13.39□□□□□ -0.27
NEDD9-213ENST00000512665 RBM17Q96I25 401 aaKnown RBP13.39□□□□□ -0.27
NEDD9-213ENST00000512665 TMX4Q9H1E5 349 aaPredicted RBP13.39□□□□□ -0.27
NEDD9-213ENST00000512665 SHTN1A0MZ66 631 aa13.38□□□□□ -0.27
NEDD9-213ENST00000512665 RAD17O75943 681 aa13.38□□□□□ -0.27
NEDD9-213ENST00000512665 RPS12P25398 132 aaKnown RBP13.37□□□□□ -0.27
NEDD9-213ENST00000512665 TEFQ10587 303 aa13.37□□□□□ -0.27
NEDD9-213ENST00000512665 SULF1Q8IWU6 871 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms