RNA–Protein interactions for RNA: ENST00000512531.1

MSH3-203, Transcript of mutS homolog 3, humanhuman

TSL 5

Gene MSH3, Length 531 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-203ENST00000512531 PARP9Q8IXQ6 854 aa11.98□□□□□ -0.49
MSH3-203ENST00000512531 TMC2Q8TDI7 906 aa11.98□□□□□ -0.49
MSH3-203ENST00000512531 ATG3Q9NT62 314 aa11.98□□□□□ -0.49
MSH3-203ENST00000512531 ASAP1Q9ULH1 1129 aa11.98□□□□□ -0.49
MSH3-203ENST00000512531 TRAPPC3LQ5T215 181 aa11.97□□□□□ -0.49
MSH3-203ENST00000512531 TMEM92Q6UXU6 159 aa11.97□□□□□ -0.49
MSH3-203ENST00000512531 RTCBQ9Y3I0 505 aaKnown RBP11.97□□□□□ -0.49
MSH3-203ENST00000512531 CNTNAP4Q9C0A0 1308 aa11.96□□□□□ -0.49
MSH3-203ENST00000512531 IRF6O14896 467 aa11.96□□□□□ -0.49
MSH3-203ENST00000512531 MMP10P09238 476 aa11.96□□□□□ -0.49
MSH3-203ENST00000512531 IRX5P78411 483 aaPredicted RBP11.96□□□□□ -0.49
MSH3-203ENST00000512531 EXOSC9Q06265 439 aaKnown RBP11.96□□□□□ -0.49
MSH3-203ENST00000512531 MAP2K5Q13163 448 aa11.96□□□□□ -0.49
MSH3-203ENST00000512531 DCAF5Q96JK2 942 aa11.96□□□□□ -0.49
MSH3-203ENST00000512531 PXDNLA1KZ92 1463 aa11.95□□□□□ -0.5
MSH3-203ENST00000512531 EIF5BO60841 1220 aaKnown RBP11.95□□□□□ -0.5
MSH3-203ENST00000512531 EIF4A2Q14240 407 aaKnown RBP11.95□□□□□ -0.5
MSH3-203ENST00000512531 MVPQ14764 893 aaKnown RBP11.95□□□□□ -0.5
MSH3-203ENST00000512531 AMHR2Q16671 573 aa11.95□□□□□ -0.5
MSH3-203ENST00000512531 FAM161AQ3B820 660 aa11.95□□□□□ -0.5
MSH3-203ENST00000512531 AMOTQ4VCS5 1084 aa11.95□□□□□ -0.5
MSH3-203ENST00000512531 IPO9Q96P70 1041 aaKnown RBP11.95□□□□□ -0.5
MSH3-203ENST00000512531 CHMP4AQ9BY43 222 aa11.95□□□□□ -0.5
MSH3-203ENST00000512531 BACH2Q9BYV9 841 aa11.95□□□□□ -0.5
MSH3-203ENST00000512531 COG6Q9Y2V7 657 aa11.95□□□□□ -0.5
MSH3-203ENST00000512531 C10orf71Q711Q0 1435 aa11.94□□□□□ -0.5
MSH3-203ENST00000512531 RPS6KA4O75676 772 aa11.94□□□□□ -0.5
MSH3-203ENST00000512531 ATN1P54259 1190 aaPredicted RBP11.94□□□□□ -0.5
MSH3-203ENST00000512531 PLEKHO1Q53GL0 409 aaPredicted RBP11.94□□□□□ -0.5
MSH3-203ENST00000512531 ATF7IPQ6VMQ6 1270 aa11.94□□□□□ -0.5
MSH3-203ENST00000512531 ARHGAP45Q92619 1136 aa11.94□□□□□ -0.5
MSH3-203ENST00000512531 UPF2Q9HAU5 1272 aaKnown RBP11.94□□□□□ -0.5
MSH3-203ENST00000512531 CCDC87Q9NVE4 849 aa11.94□□□□□ -0.5
MSH3-203ENST00000512531 NOP58Q9Y2X3 529 aaKnown RBP11.94□□□□□ -0.5
MSH3-203ENST00000512531 TOMM70O94826 608 aa11.93□□□□□ -0.5
MSH3-203ENST00000512531 HMOX1P09601 288 aa11.93□□□□□ -0.5
MSH3-203ENST00000512531 APLP1P51693 650 aa11.93□□□□□ -0.5
MSH3-203ENST00000512531 SMIM5Q71RC9 77 aa11.93□□□□□ -0.5
MSH3-203ENST00000512531 GAS2L2Q8NHY3 880 aa11.93□□□□□ -0.5
MSH3-203ENST00000512531 PANK1Q8TE04 598 aa11.93□□□□□ -0.5
MSH3-203ENST00000512531 RTF1Q92541 710 aaKnown RBP11.93□□□□□ -0.5
MSH3-203ENST00000512531 LAS1LQ9Y4W2 734 aaKnown RBP11.93□□□□□ -0.5
MSH3-203ENST00000512531 KIAA1551Q9HCM1 1747 aa11.92□□□□□ -0.5
MSH3-203ENST00000512531 GYS1P13807 737 aa11.92□□□□□ -0.5
MSH3-203ENST00000512531 ZNF526Q8TF50 670 aaPredicted RBP11.92□□□□□ -0.5
MSH3-203ENST00000512531 SLC4A9Q96Q91 983 aa11.92□□□□□ -0.5
MSH3-203ENST00000512531 API5Q9BZZ5 524 aaKnown RBP11.92□□□□□ -0.5
MSH3-203ENST00000512531 RFC4P35249 363 aa11.91□□□□□ -0.5
MSH3-203ENST00000512531 ITPRIPQ8IWB1 547 aa11.91□□□□□ -0.5
MSH3-203ENST00000512531 TSR2Q969E8 191 aaKnown RBP11.91□□□□□ -0.5
MSH3-203ENST00000512531 PARP3Q9Y6F1 533 aa11.91□□□□□ -0.5
MSH3-203ENST00000512531 C4AP0C0L4 1744 aa11.91□□□□□ -0.5
MSH3-203ENST00000512531 COL5A3P25940 1745 aaPredicted RBP11.91□□□□□ -0.5
MSH3-203ENST00000512531 A0A0G2JLW4 131 aa11.9□□□□□ -0.5
MSH3-203ENST00000512531 HTATSF1O43719 755 aaKnown RBP11.9□□□□□ -0.5
MSH3-203ENST00000512531 CABP4P57796 275 aa11.9□□□□□ -0.5
MSH3-203ENST00000512531 SULT6B1Q6IMI4 303 aa11.9□□□□□ -0.5
MSH3-203ENST00000512531 OXER1Q8TDS5 423 aa11.9□□□□□ -0.5
MSH3-203ENST00000512531 BCS1LQ9Y276 419 aa11.9□□□□□ -0.5
MSH3-203ENST00000512531 BOLA1Q9Y3E2 137 aa11.9□□□□□ -0.5
MSH3-203ENST00000512531 KDM6AO15550 1401 aaPredicted RBP11.89□□□□□ -0.51
MSH3-203ENST00000512531 DPEP1P16444 411 aa11.89□□□□□ -0.51
MSH3-203ENST00000512531 MAP3K9P80192 1104 aa11.89□□□□□ -0.51
MSH3-203ENST00000512531 EVX2Q03828 476 aa11.89□□□□□ -0.51
MSH3-203ENST00000512531 ZNF530Q6P9A1 599 aaPredicted RBP11.89□□□□□ -0.51
MSH3-203ENST00000512531 RBM46Q8TBY0 533 aaKnown RBP11.89□□□□□ -0.51
MSH3-203ENST00000512531 SSH1Q8WYL5 1049 aa11.89□□□□□ -0.51
MSH3-203ENST00000512531 REPIN1Q9BWE0 567 aaKnown RBP11.89□□□□□ -0.51
MSH3-203ENST00000512531 BCL2L13Q9BXK5 485 aa11.89□□□□□ -0.51
MSH3-203ENST00000512531 PIM2Q9P1W9 311 aa11.89□□□□□ -0.51
MSH3-203ENST00000512531 BRCA1P38398 1863 aaKnown RBP11.89□□□□□ -0.51
MSH3-203ENST00000512531 SOS1Q07889 1333 aaPredicted RBP11.88□□□□□ -0.51
MSH3-203ENST00000512531 ARFGEF1Q9Y6D6 1849 aa11.88□□□□□ -0.51
MSH3-203ENST00000512531 KCNA3P22001 575 aa11.88□□□□□ -0.51
MSH3-203ENST00000512531 RGS3P49796 1198 aa11.88□□□□□ -0.51
MSH3-203ENST00000512531 TWISTNBQ3B726 338 aaPredicted RBP11.88□□□□□ -0.51
MSH3-203ENST00000512531 C1orf141Q5JVX7 400 aa11.88□□□□□ -0.51
MSH3-203ENST00000512531 ARHGAP27Q6ZUM4 889 aa11.88□□□□□ -0.51
MSH3-203ENST00000512531 DNAJC5GQ8N7S2 189 aa11.88□□□□□ -0.51
MSH3-203ENST00000512531 DDX12PQ92771 950 aa11.88□□□□□ -0.51
MSH3-203ENST00000512531 NOB1Q9ULX3 412 aaKnown RBP11.88□□□□□ -0.51
MSH3-203ENST00000512531 MYH14Q7Z406 1995 aaKnown RBP11.88□□□□□ -0.51
MSH3-203ENST00000512531 N4BP2Q86UW6 1770 aaPredicted RBP11.87□□□□□ -0.51
MSH3-203ENST00000512531 TRIM27P14373 513 aa11.87□□□□□ -0.51
MSH3-203ENST00000512531 FSTL1Q12841 308 aa11.87□□□□□ -0.51
MSH3-203ENST00000512531 HDAC1Q13547 482 aaPredicted RBP11.87□□□□□ -0.51
MSH3-203ENST00000512531 NPM2Q86SE8 214 aaKnown RBP11.87□□□□□ -0.51
MSH3-203ENST00000512531 WWC3Q9ULE0 1092 aa11.87□□□□□ -0.51
MSH3-203ENST00000512531 USP42Q9H9J4 1324 aaKnown RBP11.86□□□□□ -0.51
MSH3-203ENST00000512531 ZC3H4Q9UPT8 1303 aaKnown RBP11.86□□□□□ -0.51
MSH3-203ENST00000512531 ZNF853P0CG23 659 aa11.86□□□□□ -0.51
MSH3-203ENST00000512531 CRKLP46109 303 aaKnown RBP11.86□□□□□ -0.51
MSH3-203ENST00000512531 DALRD3Q5D0E6 543 aaKnown RBP11.86□□□□□ -0.51
MSH3-203ENST00000512531 PHACTR3Q96KR7 559 aa11.86□□□□□ -0.51
MSH3-203ENST00000512531 BABAM1Q9NWV8 329 aa11.86□□□□□ -0.51
MSH3-203ENST00000512531 ATMINO43313 823 aaPredicted RBP11.85□□□□□ -0.51
MSH3-203ENST00000512531 TM4SF1P30408 202 aa11.85□□□□□ -0.51
MSH3-203ENST00000512531 C9orf131Q5VYM1 1079 aa11.85□□□□□ -0.51
MSH3-203ENST00000512531 NFATC2IPQ8NCF5 419 aa11.85□□□□□ -0.51
MSH3-203ENST00000512531 MBIPQ9NS73 344 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms