RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 MAP3K2Q9Y2U5 619 aa23.28■■□□□ 1.32
NPHP4-210ENST00000506941 RIC1Q4ADV7 1423 aa23.27■■□□□ 1.32
NPHP4-210ENST00000506941 SLX4Q8IY92 1834 aa23.27■■□□□ 1.32
NPHP4-210ENST00000506941 METTL22Q9BUU2 404 aaPredicted RBP23.27■■□□□ 1.32
NPHP4-210ENST00000506941 MYH3P11055 1940 aa23.27■■□□□ 1.32
NPHP4-210ENST00000506941 PPP1R42Q7Z4L9 355 aa23.26■■□□□ 1.31
NPHP4-210ENST00000506941 C2CD5Q86YS7 1000 aa23.26■■□□□ 1.31
NPHP4-210ENST00000506941 PELP1Q8IZL8 1130 aaKnown RBP23.26■■□□□ 1.31
NPHP4-210ENST00000506941 SSH1Q8WYL5 1049 aa23.26■■□□□ 1.31
NPHP4-210ENST00000506941 MYD88Q99836 296 aa23.26■■□□□ 1.31
NPHP4-210ENST00000506941 TAF1P21675 1872 aa23.26■■□□□ 1.31
NPHP4-210ENST00000506941 PDE6BP35913 854 aa23.25■■□□□ 1.31
NPHP4-210ENST00000506941 FKBP5Q13451 457 aaPredicted RBP23.25■■□□□ 1.31
NPHP4-210ENST00000506941 MRPL50Q8N5N7 158 aaKnown RBP23.25■■□□□ 1.31
NPHP4-210ENST00000506941 UTP14AQ9BVJ6 771 aaKnown RBP23.25■■□□□ 1.31
NPHP4-210ENST00000506941 CT47B1P0C2W7 299 aaPredicted RBP23.24■■□□□ 1.31
NPHP4-210ENST00000506941 GTF2E1P29083 439 aaPredicted RBP23.24■■□□□ 1.31
NPHP4-210ENST00000506941 TRIM28Q13263 835 aaKnown RBP23.24■■□□□ 1.31
NPHP4-210ENST00000506941 GPR162Q16538 588 aa23.24■■□□□ 1.31
NPHP4-210ENST00000506941 SYNE4Q8N205 404 aa23.24■■□□□ 1.31
NPHP4-210ENST00000506941 BCL2L13Q9BXK5 485 aa23.24■■□□□ 1.31
NPHP4-210ENST00000506941 KLRG2A4D1S0 409 aaPredicted RBP23.22■■□□□ 1.31
NPHP4-210ENST00000506941 H0YIN7 160 aa23.22■■□□□ 1.31
NPHP4-210ENST00000506941 IGKV5-2P06315 115 aa23.22■■□□□ 1.31
NPHP4-210ENST00000506941 ALDH1L2Q3SY69 923 aa23.22■■□□□ 1.31
NPHP4-210ENST00000506941 PIM2Q9P1W9 311 aa23.22■■□□□ 1.31
NPHP4-210ENST00000506941 TRMT112Q9UI30 125 aaKnown RBP23.22■■□□□ 1.31
NPHP4-210ENST00000506941 RNF123Q5XPI4 1314 aa23.22■■□□□ 1.31
NPHP4-210ENST00000506941 F6X3S4 739 aa23.21■■□□□ 1.31
NPHP4-210ENST00000506941 C3orf67Q6ZVT6 689 aa23.21■■□□□ 1.31
NPHP4-210ENST00000506941 DNAAF4Q8WXU2 420 aa23.21■■□□□ 1.31
NPHP4-210ENST00000506941 CCDC88AQ3V6T2 1871 aa23.2■■□□□ 1.3
NPHP4-210ENST00000506941 SRGNP10124 158 aa23.2■■□□□ 1.3
NPHP4-210ENST00000506941 PDZRN3Q9UPQ7 1066 aa23.2■■□□□ 1.3
NPHP4-210ENST00000506941 BCS1LQ9Y276 419 aa23.2■■□□□ 1.3
NPHP4-210ENST00000506941 SBF1O95248 1867 aa23.19■■□□□ 1.3
NPHP4-210ENST00000506941 SH3TC1Q8TE82 1336 aa23.19■■□□□ 1.3
NPHP4-210ENST00000506941 DCAF8L1A6NGE4 600 aa23.19■■□□□ 1.3
NPHP4-210ENST00000506941 CWF19L2Q2TBE0 894 aaKnown RBP23.19■■□□□ 1.3
NPHP4-210ENST00000506941 SLC10A5Q5PT55 438 aa23.19■■□□□ 1.3
NPHP4-210ENST00000506941 CCDC191Q8NCU4 936 aa23.19■■□□□ 1.3
NPHP4-210ENST00000506941 FAM89AQ96GI7 184 aa23.19■■□□□ 1.3
NPHP4-210ENST00000506941 SMC4Q9NTJ3 1288 aa23.19■■□□□ 1.3
NPHP4-210ENST00000506941 FER1L6Q2WGJ9 1857 aa23.19■■□□□ 1.3
NPHP4-210ENST00000506941 RARSP54136 660 aaKnown RBP23.18■■□□□ 1.3
NPHP4-210ENST00000506941 CRY2Q49AN0 593 aa23.18■■□□□ 1.3
NPHP4-210ENST00000506941 DALRD3Q5D0E6 543 aaKnown RBP23.18■■□□□ 1.3
NPHP4-210ENST00000506941 CWC25Q9NXE8 425 aaPredicted RBP23.18■■□□□ 1.3
NPHP4-210ENST00000506941 NEURL1BA8MQ27 555 aa23.17■■□□□ 1.3
NPHP4-210ENST00000506941 HCLS1P14317 486 aaPredicted RBP23.17■■□□□ 1.3
NPHP4-210ENST00000506941 NEXNQ0ZGT2 675 aa23.17■■□□□ 1.3
NPHP4-210ENST00000506941 RTL5Q5HYW3 569 aaPredicted RBP23.17■■□□□ 1.3
NPHP4-210ENST00000506941 ZNF622Q969S3 477 aaKnown RBP eCLIP23.17■■□□□ 1.3
NPHP4-210ENST00000506941 STYK1Q6J9G0 422 aa23.16■■□□□ 1.3
NPHP4-210ENST00000506941 TTLL6Q8N841 843 aa23.16■■□□□ 1.3
NPHP4-210ENST00000506941 MASTLQ96GX5 879 aa23.16■■□□□ 1.3
NPHP4-210ENST00000506941 NPR1P16066 1061 aa23.15■■□□□ 1.3
NPHP4-210ENST00000506941 ZBTB38Q8NAP3 1195 aaPredicted RBP23.15■■□□□ 1.3
NPHP4-210ENST00000506941 JARID2Q92833 1246 aaPredicted RBP23.15■■□□□ 1.3
NPHP4-210ENST00000506941 COL4A1P02462 1669 aa23.15■■□□□ 1.3
NPHP4-210ENST00000506941 SPEF2Q9C093 1822 aa23.15■■□□□ 1.3
NPHP4-210ENST00000506941 PTPRCP08575 1304 aa23.14■■□□□ 1.3
NPHP4-210ENST00000506941 PCCAP05165 728 aaPredicted RBP23.14■■□□□ 1.29
NPHP4-210ENST00000506941 BEND3Q5T5X7 828 aa23.14■■□□□ 1.29
NPHP4-210ENST00000506941 LINS1Q8NG48 757 aa23.14■■□□□ 1.29
NPHP4-210ENST00000506941 GRIN3BO60391 1043 aa23.13■■□□□ 1.29
NPHP4-210ENST00000506941 BRPF1P55201 1214 aaPredicted RBP23.13■■□□□ 1.29
NPHP4-210ENST00000506941 NLRP3Q96P20 1036 aa23.13■■□□□ 1.29
NPHP4-210ENST00000506941 IRS4O14654 1257 aaPredicted RBP23.12■■□□□ 1.29
NPHP4-210ENST00000506941 GCKRQ14397 625 aa23.12■■□□□ 1.29
NPHP4-210ENST00000506941 PRPF40BQ6NWY9 871 aaKnown RBP23.12■■□□□ 1.29
NPHP4-210ENST00000506941 CNKSR1Q969H4 720 aa23.12■■□□□ 1.29
NPHP4-210ENST00000506941 HOXA10P31260 410 aaPredicted RBP23.11■■□□□ 1.29
NPHP4-210ENST00000506941 SLC4A10Q6U841 1118 aa23.11■■□□□ 1.29
NPHP4-210ENST00000506941 RPGRQ92834 1020 aaKnown RBP23.11■■□□□ 1.29
NPHP4-210ENST00000506941 BCAR3O75815 825 aa23.1■■□□□ 1.29
NPHP4-210ENST00000506941 NOB1Q9ULX3 412 aaKnown RBP23.1■■□□□ 1.29
NPHP4-210ENST00000506941 DICER1Q9UPY3 1922 aaKnown RBP23.1■■□□□ 1.29
NPHP4-210ENST00000506941 CDHR2Q9BYE9 1310 aa23.09■■□□□ 1.29
NPHP4-210ENST00000506941 LRRC37AA6NMS7 1700 aa23.09■■□□□ 1.29
NPHP4-210ENST00000506941 UBE3BQ7Z3V4 1068 aa23.09■■□□□ 1.29
NPHP4-210ENST00000506941 H7C1W4 665 aa23.08■■□□□ 1.29
NPHP4-210ENST00000506941 CASP7P55210 303 aa23.08■■□□□ 1.29
NPHP4-210ENST00000506941 YTHDC1Q96MU7 727 aaKnown RBP23.08■■□□□ 1.29
NPHP4-210ENST00000506941 ZNF219Q9P2Y4 722 aaPredicted RBP23.08■■□□□ 1.29
NPHP4-210ENST00000506941 C21orf2O43822 256 aa23.07■■□□□ 1.28
NPHP4-210ENST00000506941 RBM17Q96I25 401 aaKnown RBP23.07■■□□□ 1.28
NPHP4-210ENST00000506941 CRAMP1Q96RY5 1269 aa23.07■■□□□ 1.28
NPHP4-210ENST00000506941 ABCC4O15439 1325 aa23.07■■□□□ 1.28
NPHP4-210ENST00000506941 KIF16BQ96L93 1317 aa23.07■■□□□ 1.28
NPHP4-210ENST00000506941 ALDH1B1P30837 517 aa23.06■■□□□ 1.28
NPHP4-210ENST00000506941 SF3B3Q15393 1217 aaKnown RBP23.06■■□□□ 1.28
NPHP4-210ENST00000506941 ARHGAP27Q6ZUM4 889 aa23.06■■□□□ 1.28
NPHP4-210ENST00000506941 SLC51AQ86UW1 340 aa23.06■■□□□ 1.28
NPHP4-210ENST00000506941 C7orf43Q8WVR3 580 aa23.06■■□□□ 1.28
NPHP4-210ENST00000506941 SRCIN1Q9C0H9 1055 aa23.06■■□□□ 1.28
NPHP4-210ENST00000506941 TIAM2Q8IVF5 1701 aa23.05■■□□□ 1.28
NPHP4-210ENST00000506941 PDE8AO60658 829 aa23.05■■□□□ 1.28
NPHP4-210ENST00000506941 ALDH1L1O75891 902 aa23.05■■□□□ 1.28
NPHP4-210ENST00000506941 OLFM4Q6UX06 510 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms