RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CDK2AP1O14519 115 aa6.81□□□□□ -1.32
USP54-217ENST00000498213 LBRQ14739 615 aaKnown RBP6.81□□□□□ -1.32
USP54-217ENST00000498213 CCDC102BQ68D86 513 aa6.81□□□□□ -1.32
USP54-217ENST00000498213 C1orf229Q6ZS94 237 aaPredicted RBP6.81□□□□□ -1.32
USP54-217ENST00000498213 OGFOD1Q8N543 542 aa6.81□□□□□ -1.32
USP54-217ENST00000498213 ZNF594Q96JF6 807 aaPredicted RBP6.81□□□□□ -1.32
USP54-217ENST00000498213 SLC4A9Q96Q91 983 aa6.81□□□□□ -1.32
USP54-217ENST00000498213 GDF2Q9UK05 429 aaPredicted RBP6.81□□□□□ -1.32
USP54-217ENST00000498213 IQGAP2Q13576 1575 aa6.81□□□□□ -1.32
USP54-217ENST00000498213 KIAA0556O60303 1618 aa6.8□□□□□ -1.32
USP54-217ENST00000498213 PALM3A6NDB9 673 aaPredicted RBP6.8□□□□□ -1.32
USP54-217ENST00000498213 RASA1P20936 1047 aa6.8□□□□□ -1.32
USP54-217ENST00000498213 BAG6P46379 1132 aa6.8□□□□□ -1.32
USP54-217ENST00000498213 ARSJQ5FYB0 599 aaPredicted RBP6.8□□□□□ -1.32
USP54-217ENST00000498213 C1orf216Q8TAB5 229 aa6.8□□□□□ -1.32
USP54-217ENST00000498213 EDARADDQ8WWZ3 215 aa6.8□□□□□ -1.32
USP54-217ENST00000498213 CHMP3Q9Y3E7 222 aa6.8□□□□□ -1.32
USP54-217ENST00000498213 GJA3Q9Y6H8 435 aa6.8□□□□□ -1.32
USP54-217ENST00000498213 FHOD3Q2V2M9 1422 aa6.79□□□□□ -1.32
USP54-217ENST00000498213 TRAPPC8Q9Y2L5 1435 aa6.79□□□□□ -1.32
USP54-217ENST00000498213 MTFR1Q15390 333 aa6.79□□□□□ -1.32
USP54-217ENST00000498213 LARP1Q6PKG0 1096 aaKnown RBP6.79□□□□□ -1.32
USP54-217ENST00000498213 ALYREFQ86V81 257 aaKnown RBP6.79□□□□□ -1.32
USP54-217ENST00000498213 LARGE2Q8N3Y3 721 aa6.79□□□□□ -1.32
USP54-217ENST00000498213 GOLGA6L1Q8N7Z2 621 aa6.79□□□□□ -1.32
USP54-217ENST00000498213 PPP1R12CQ9BZL4 782 aa6.79□□□□□ -1.32
USP54-217ENST00000498213 ZNF777Q9ULD5 760 aaPredicted RBP6.79□□□□□ -1.32
USP54-217ENST00000498213 ZNF232Q9UNY5 417 aa6.79□□□□□ -1.32
USP54-217ENST00000498213 MAFBQ9Y5Q3 323 aaPredicted RBP6.79□□□□□ -1.32
USP54-217ENST00000498213 CARMIL1Q5VZK9 1371 aa6.79□□□□□ -1.32
USP54-217ENST00000498213 PTPRKQ15262 1439 aa6.78□□□□□ -1.32
USP54-217ENST00000498213 BMP4P12644 408 aa6.78□□□□□ -1.32
USP54-217ENST00000498213 AMPD1P23109 780 aa6.78□□□□□ -1.32
USP54-217ENST00000498213 COL8A1P27658 744 aa6.78□□□□□ -1.32
USP54-217ENST00000498213 CLDN10P78369 228 aa6.78□□□□□ -1.32
USP54-217ENST00000498213 UBAP2LQ14157 1087 aaKnown RBP6.78□□□□□ -1.32
USP54-217ENST00000498213 FIGNL1Q6PIW4 674 aa6.78□□□□□ -1.32
USP54-217ENST00000498213 BICDL1Q6ZP65 573 aa6.78□□□□□ -1.32
USP54-217ENST00000498213 SLC9A9Q8IVB4 645 aa6.78□□□□□ -1.32
USP54-217ENST00000498213 SCHIP1Q9P0W5 487 aaPredicted RBP6.78□□□□□ -1.32
USP54-217ENST00000498213 ATXN7L1Q9ULK2 861 aaPredicted RBP6.78□□□□□ -1.32
USP54-217ENST00000498213 KIAA1024Q9UPX6 916 aa6.78□□□□□ -1.32
USP54-217ENST00000498213 SETD1BQ9UPS6 1966 aaKnown RBP6.77□□□□□ -1.33
USP54-217ENST00000498213 BIVM-ERCC5R4GMW8 1640 aa6.77□□□□□ -1.33
USP54-217ENST00000498213 LMOD1P29536 600 aaPredicted RBP6.77□□□□□ -1.33
USP54-217ENST00000498213 GRIN2CQ14957 1233 aa6.77□□□□□ -1.33
USP54-217ENST00000498213 TNS4Q8IZW8 715 aa6.77□□□□□ -1.33
USP54-217ENST00000498213 ABHD17AQ96GS6 310 aa6.77□□□□□ -1.33
USP54-217ENST00000498213 PARP3Q9Y6F1 533 aa6.77□□□□□ -1.33
USP54-217ENST00000498213 EFCAB5A4FU69 1503 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 ABCA9Q8IUA7 1624 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 ALKQ9UM73 1620 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 C2CD2LO14523 706 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 FURINP09958 794 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 FGFR3P22607 806 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 TBCELQ5QJ74 424 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 CRISPLD1Q9H336 500 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 NEUROD4Q9HD90 331 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 ZDHHC3Q9NYG2 299 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 IQSEC3Q9UPP2 1182 aaPredicted RBP6.76□□□□□ -1.33
USP54-217ENST00000498213 USP3Q9Y6I4 520 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 ATP10AO60312 1499 aa6.76□□□□□ -1.33
USP54-217ENST00000498213 ATP10BO94823 1461 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 SERTM1A2A2V5 107 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 ATP4AP20648 1035 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 CTBSQ01459 385 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 LINC00114Q6XXX2 140 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 SLCO4C1Q6ZQN7 724 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 NLRP8Q86W28 1048 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 SIX5Q8N196 739 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 L3MBTL2Q969R5 705 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 KRTAP4-8Q9BYQ9 185 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 SUV39H2Q9H5I1 410 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 VRTNQ9H8Y1 702 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 GGA1Q9UJY5 639 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 RICTORQ6R327 1708 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 C9orf84Q5VXU9 1444 aa6.75□□□□□ -1.33
USP54-217ENST00000498213 ABCA8O94911 1581 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 SHANK2Q9UPX8 1470 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 A0A1W2PNR3 127 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 SFI1A8K8P3 1242 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 PIK3R2O00459 728 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 ZBTB7BO15156 539 aaPredicted RBP6.74□□□□□ -1.33
USP54-217ENST00000498213 BNIP3LO60238 219 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 SEC13P55735 322 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 PSMA6P60900 246 aaKnown RBP6.74□□□□□ -1.33
USP54-217ENST00000498213 TSEN2Q8NCE0 465 aaKnown RBP6.74□□□□□ -1.33
USP54-217ENST00000498213 GTF3C3Q9Y5Q9 886 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 HECW1Q76N89 1606 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 UGGT2Q9NYU1 1516 aa6.74□□□□□ -1.33
USP54-217ENST00000498213 MAGI2Q86UL8 1455 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 CPS1P31327 1500 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 ZMYM4Q5VZL5 1548 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 M0R2N6 131 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 GNB5O14775 395 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 ATXN7O15265 892 aaPredicted RBP6.73□□□□□ -1.33
USP54-217ENST00000498213 PPP1R12BO60237 982 aaPredicted RBP6.73□□□□□ -1.33
USP54-217ENST00000498213 HOXB4P17483 251 aaPredicted RBP6.73□□□□□ -1.33
USP54-217ENST00000498213 NOS2P35228 1153 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 EPHA4P54764 986 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms