RNA–Protein interactions for RNA: ENST00000497977.1

PTPRN-218, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 701 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-218ENST00000497977 LMNB1P20700 586 aa13.25□□□□□ -0.29
PTPRN-218ENST00000497977 HOXA10P31260 410 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-218ENST00000497977 DPY19L2Q6NUT2 758 aa13.25□□□□□ -0.29
PTPRN-218ENST00000497977 TMC4Q7Z404 712 aa13.25□□□□□ -0.29
PTPRN-218ENST00000497977 NUTM1Q86Y26 1132 aa13.25□□□□□ -0.29
PTPRN-218ENST00000497977 CRAMP1Q96RY5 1269 aa13.25□□□□□ -0.29
PTPRN-218ENST00000497977 ISCA1Q9BUE6 129 aa13.25□□□□□ -0.29
PTPRN-218ENST00000497977 METTL22Q9BUU2 404 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-218ENST00000497977 PHAXQ9H814 394 aaKnown RBP13.25□□□□□ -0.29
PTPRN-218ENST00000497977 CWC25Q9NXE8 425 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-218ENST00000497977 PI4KAP2A4QPH2 592 aa13.24□□□□□ -0.29
PTPRN-218ENST00000497977 NTSR2O95665 410 aa13.24□□□□□ -0.29
PTPRN-218ENST00000497977 FKBP5Q13451 457 aaPredicted RBP13.24□□□□□ -0.29
PTPRN-218ENST00000497977 CRY2Q49AN0 593 aa13.24□□□□□ -0.29
PTPRN-218ENST00000497977 CCDC93Q567U6 631 aa13.24□□□□□ -0.29
PTPRN-218ENST00000497977 PRPF40BQ6NWY9 871 aaKnown RBP13.24□□□□□ -0.29
PTPRN-218ENST00000497977 PI4KAP1Q8N8J0 262 aa13.24□□□□□ -0.29
PTPRN-218ENST00000497977 ZBTB38Q8NAP3 1195 aaPredicted RBP13.24□□□□□ -0.29
PTPRN-218ENST00000497977 MYD88Q99836 296 aa13.24□□□□□ -0.29
PTPRN-218ENST00000497977 GPBP1L1Q9HC44 474 aaPredicted RBP13.24□□□□□ -0.29
PTPRN-218ENST00000497977 C4AP0C0L4 1744 aa13.24□□□□□ -0.29
PTPRN-218ENST00000497977 ZC3H4Q9UPT8 1303 aaKnown RBP13.23□□□□□ -0.29
PTPRN-218ENST00000497977 ATP5J2-PTCD1G3V325 749 aa13.23□□□□□ -0.29
PTPRN-218ENST00000497977 C9orf131Q5VYM1 1079 aa13.23□□□□□ -0.29
PTPRN-218ENST00000497977 ZNF784Q8NCA9 323 aaPredicted RBP13.23□□□□□ -0.29
PTPRN-218ENST00000497977 MAP3K2Q9Y2U5 619 aa13.23□□□□□ -0.29
PTPRN-218ENST00000497977 COL24A1Q17RW2 1714 aa13.22□□□□□ -0.29
PTPRN-218ENST00000497977 UBN2Q6ZU65 1347 aa13.22□□□□□ -0.29
PTPRN-218ENST00000497977 KDM2BQ8NHM5 1336 aa13.22□□□□□ -0.29
PTPRN-218ENST00000497977 MYH14Q7Z406 1995 aaKnown RBP13.22□□□□□ -0.29
PTPRN-218ENST00000497977 SLFN5Q08AF3 891 aa13.22□□□□□ -0.29
PTPRN-218ENST00000497977 FLIIQ13045 1269 aa13.22□□□□□ -0.29
PTPRN-218ENST00000497977 SUPT20HQ8NEM7 779 aa13.22□□□□□ -0.29
PTPRN-218ENST00000497977 VPS33BQ9H267 617 aa13.22□□□□□ -0.29
PTPRN-218ENST00000497977 TAOK3Q9H2K8 898 aa13.22□□□□□ -0.29
PTPRN-218ENST00000497977 RNF181Q9P0P0 153 aa13.22□□□□□ -0.29
PTPRN-218ENST00000497977 ZNF219Q9P2Y4 722 aaPredicted RBP13.22□□□□□ -0.29
PTPRN-218ENST00000497977 IRS4O14654 1257 aaPredicted RBP13.21□□□□□ -0.29
PTPRN-218ENST00000497977 PCCAP05165 728 aaPredicted RBP13.21□□□□□ -0.29
PTPRN-218ENST00000497977 FAM89AQ96GI7 184 aa13.21□□□□□ -0.29
PTPRN-218ENST00000497977 ZNF521Q96K83 1311 aa13.2□□□□□ -0.3
PTPRN-218ENST00000497977 TCERG1O14776 1098 aaKnown RBP13.2□□□□□ -0.3
PTPRN-218ENST00000497977 SF3B3Q15393 1217 aaKnown RBP13.2□□□□□ -0.3
PTPRN-218ENST00000497977 ALDH1L2Q3SY69 923 aa13.2□□□□□ -0.3
PTPRN-218ENST00000497977 CCDC152Q4G0S7 254 aa13.2□□□□□ -0.3
PTPRN-218ENST00000497977 LINS1Q8NG48 757 aa13.2□□□□□ -0.3
PTPRN-218ENST00000497977 DNAAF4Q8WXU2 420 aa13.2□□□□□ -0.3
PTPRN-218ENST00000497977 JDP2Q8WYK2 163 aa13.2□□□□□ -0.3
PTPRN-218ENST00000497977 HDAC5Q9UQL6 1122 aa13.2□□□□□ -0.3
PTPRN-218ENST00000497977 LTBP3Q9NS15 1303 aa13.19□□□□□ -0.3
PTPRN-218ENST00000497977 TUBGCP6Q96RT7 1819 aa13.19□□□□□ -0.3
PTPRN-218ENST00000497977 PPEF1O14829 653 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-218ENST00000497977 PDE8AO60658 829 aa13.19□□□□□ -0.3
PTPRN-218ENST00000497977 HCLS1P14317 486 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-218ENST00000497977 FKBP4Q02790 459 aaKnown RBP eCLIP13.19□□□□□ -0.3
PTPRN-218ENST00000497977 SP8Q8IXZ3 490 aa13.19□□□□□ -0.3
PTPRN-218ENST00000497977 C16orf71Q8IYS4 520 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-218ENST00000497977 GRAPQ13588 217 aa13.18□□□□□ -0.3
PTPRN-218ENST00000497977 GRAPLQ8TC17 118 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-218ENST00000497977 C7orf43Q8WVR3 580 aa13.18□□□□□ -0.3
PTPRN-218ENST00000497977 PSMD1Q99460 953 aa13.18□□□□□ -0.3
PTPRN-218ENST00000497977 SPINK5Q9NQ38 1064 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-218ENST00000497977 ATP6V0A2Q9Y487 856 aa13.18□□□□□ -0.3
PTPRN-218ENST00000497977 RIC1Q4ADV7 1423 aa13.18□□□□□ -0.3
PTPRN-218ENST00000497977 PTPRCP08575 1304 aa13.17□□□□□ -0.3
PTPRN-218ENST00000497977 ZBED9Q6R2W3 1325 aa13.17□□□□□ -0.3
PTPRN-218ENST00000497977 NEURL1BA8MQ27 555 aa13.16□□□□□ -0.3
PTPRN-218ENST00000497977 IPO8O15397 1037 aaKnown RBP13.16□□□□□ -0.3
PTPRN-218ENST00000497977 RPS8P62241 208 aaKnown RBP13.16□□□□□ -0.3
PTPRN-218ENST00000497977 GCKRQ14397 625 aa13.16□□□□□ -0.3
PTPRN-218ENST00000497977 RTL5Q5HYW3 569 aaPredicted RBP13.16□□□□□ -0.3
PTPRN-218ENST00000497977 DPP8Q6V1X1 898 aaPredicted RBP13.16□□□□□ -0.3
PTPRN-218ENST00000497977 SYNE4Q8N205 404 aa13.16□□□□□ -0.3
PTPRN-218ENST00000497977 MPNDQ8N594 471 aa13.16□□□□□ -0.3
PTPRN-218ENST00000497977 CDC5LQ99459 802 aaKnown RBP13.16□□□□□ -0.3
PTPRN-218ENST00000497977 C9orf78Q9NZ63 289 aaPredicted RBP13.16□□□□□ -0.3
PTPRN-218ENST00000497977 CDHR2Q9BYE9 1310 aa13.15□□□□□ -0.3
PTPRN-218ENST00000497977 GLTPD2A6NH11 291 aa13.15□□□□□ -0.3
PTPRN-218ENST00000497977 H7C1W4 665 aa13.15□□□□□ -0.3
PTPRN-218ENST00000497977 ALDH1L1O75891 902 aa13.15□□□□□ -0.3
PTPRN-218ENST00000497977 SLC4A10Q6U841 1118 aa13.15□□□□□ -0.3
PTPRN-218ENST00000497977 G2E3Q7L622 706 aa13.15□□□□□ -0.3
PTPRN-218ENST00000497977 TRMT2AQ8IZ69 625 aaKnown RBP13.15□□□□□ -0.3
PTPRN-218ENST00000497977 ZNF526Q8TF50 670 aaPredicted RBP13.15□□□□□ -0.3
PTPRN-218ENST00000497977 SRCIN1Q9C0H9 1055 aa13.15□□□□□ -0.3
PTPRN-218ENST00000497977 UTRNP46939 3433 aa13.14□□□□□ -0.31
PTPRN-218ENST00000497977 NFKBIEO00221 500 aa13.14□□□□□ -0.31
PTPRN-218ENST00000497977 VEGFAP15692 232 aaPredicted RBP13.14□□□□□ -0.31
PTPRN-218ENST00000497977 EIF6P56537 245 aaKnown RBP13.14□□□□□ -0.31
PTPRN-218ENST00000497977 ANKRD18AQ8IVF6 992 aa13.14□□□□□ -0.31
PTPRN-218ENST00000497977 CDCA7LQ96GN5 454 aa13.14□□□□□ -0.31
PTPRN-218ENST00000497977 EYA3Q99504 573 aa13.14□□□□□ -0.31
PTPRN-218ENST00000497977 G3V3G9 751 aa13.13□□□□□ -0.31
PTPRN-218ENST00000497977 IGKV5-2P06315 115 aa13.13□□□□□ -0.31
PTPRN-218ENST00000497977 IARSP41252 1262 aaKnown RBP13.13□□□□□ -0.31
PTPRN-218ENST00000497977 DCAF8Q5TAQ9 597 aa13.13□□□□□ -0.31
PTPRN-218ENST00000497977 API5Q9BZZ5 524 aaKnown RBP13.13□□□□□ -0.31
PTPRN-218ENST00000497977 SMC4Q9NTJ3 1288 aa13.13□□□□□ -0.31
PTPRN-218ENST00000497977 NSFL1CQ9UNZ2 370 aaKnown RBP13.13□□□□□ -0.31
PTPRN-218ENST00000497977 ABCC4O15439 1325 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms