RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 CABLES1Q8TDN4 633 aa8.53□□□□□ -1.04
USP39-219ENST00000496047 MS4A4AQ96JQ5 239 aa8.53□□□□□ -1.04
USP39-219ENST00000496047 FMNL2Q96PY5 1086 aa8.53□□□□□ -1.04
USP39-219ENST00000496047 C22orf23Q9BZE7 217 aa8.53□□□□□ -1.04
USP39-219ENST00000496047 LRRCC1Q9C099 1032 aa8.53□□□□□ -1.04
USP39-219ENST00000496047 NRAPQ86VF7 1730 aa8.53□□□□□ -1.04
USP39-219ENST00000496047 ERBB4Q15303 1308 aa8.53□□□□□ -1.04
USP39-219ENST00000496047 HEG1Q9ULI3 1381 aa8.52□□□□□ -1.05
USP39-219ENST00000496047 COL16A1Q07092 1604 aaPredicted RBP8.52□□□□□ -1.05
USP39-219ENST00000496047 GIGYF1O75420 1035 aaPredicted RBP8.52□□□□□ -1.05
USP39-219ENST00000496047 SNRPA1P09661 255 aaKnown RBP8.52□□□□□ -1.05
USP39-219ENST00000496047 IL2RBP14784 551 aa8.52□□□□□ -1.05
USP39-219ENST00000496047 ATP8B2P98198 1209 aa8.52□□□□□ -1.05
USP39-219ENST00000496047 TTC22Q5TAA0 569 aa8.52□□□□□ -1.05
USP39-219ENST00000496047 KSR2Q6VAB6 950 aa8.52□□□□□ -1.05
USP39-219ENST00000496047 ZCRB1Q8TBF4 217 aaKnown RBP8.52□□□□□ -1.05
USP39-219ENST00000496047 CARD10Q9BWT7 1032 aa8.52□□□□□ -1.05
USP39-219ENST00000496047 DDX21Q9NR30 783 aaKnown RBP eCLIP8.52□□□□□ -1.05
USP39-219ENST00000496047 C9orf78Q9NZ63 289 aaPredicted RBP8.52□□□□□ -1.05
USP39-219ENST00000496047 USP35Q9P2H5 1018 aa8.52□□□□□ -1.05
USP39-219ENST00000496047 AOX1Q06278 1338 aa8.52□□□□□ -1.05
USP39-219ENST00000496047 JCADQ9P266 1359 aa8.51□□□□□ -1.05
USP39-219ENST00000496047 RIMBP2O15034 1052 aa8.51□□□□□ -1.05
USP39-219ENST00000496047 E2F4Q16254 413 aa8.51□□□□□ -1.05
USP39-219ENST00000496047 LARP1Q6PKG0 1096 aaKnown RBP8.51□□□□□ -1.05
USP39-219ENST00000496047 ERC1Q8IUD2 1116 aa8.51□□□□□ -1.05
USP39-219ENST00000496047 SIRT2Q8IXJ6 389 aa8.51□□□□□ -1.05
USP39-219ENST00000496047 GPATCH3Q96I76 525 aa8.51□□□□□ -1.05
USP39-219ENST00000496047 PHAXQ9H814 394 aaKnown RBP8.51□□□□□ -1.05
USP39-219ENST00000496047 LRRFIP2Q9Y608 721 aaKnown RBP8.51□□□□□ -1.05
USP39-219ENST00000496047 MYH7P12883 1935 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 NUP98P52948 1817 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 PI4KAP2A4QPH2 592 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 ERVV-2B6SEH9 535 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 APBB1O00213 710 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 REC8O95072 547 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 GLI3P10071 1580 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 MCCP23508 829 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 OS9Q13438 667 aaPredicted RBP8.5□□□□□ -1.05
USP39-219ENST00000496047 RIC3Q7Z5B4 369 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 PLEKHM2Q8IWE5 1019 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 PI4KAP1Q8N8J0 262 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 RNF166Q96A37 237 aaPredicted RBP8.5□□□□□ -1.05
USP39-219ENST00000496047 LARP6Q9BRS8 491 aaKnown RBP8.5□□□□□ -1.05
USP39-219ENST00000496047 STRN4Q9NRL3 753 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 MAP3K2Q9Y2U5 619 aa8.5□□□□□ -1.05
USP39-219ENST00000496047 ADCY9O60503 1353 aa8.49□□□□□ -1.05
USP39-219ENST00000496047 TJP1Q07157 1748 aa8.49□□□□□ -1.05
USP39-219ENST00000496047 VARS2Q5ST30 1063 aaKnown RBP8.49□□□□□ -1.05
USP39-219ENST00000496047 BEND3Q5T5X7 828 aa8.49□□□□□ -1.05
USP39-219ENST00000496047 LINS1Q8NG48 757 aa8.49□□□□□ -1.05
USP39-219ENST00000496047 ARHGEF1Q92888 912 aaKnown RBP8.49□□□□□ -1.05
USP39-219ENST00000496047 KIF1BPQ96EK5 621 aa8.49□□□□□ -1.05
USP39-219ENST00000496047 DDX27Q96GQ7 796 aaKnown RBP8.49□□□□□ -1.05
USP39-219ENST00000496047 SPATA31A6Q5VVP1 1343 aa8.49□□□□□ -1.05
USP39-219ENST00000496047 LRP5O75197 1615 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 SRGAP3O43295 1099 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 KCNQ3O43525 872 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 MX1P20591 662 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 RBM25P49756 843 aaKnown RBP8.48□□□□□ -1.05
USP39-219ENST00000496047 MEX3CQ5U5Q3 659 aaKnown RBP8.48□□□□□ -1.05
USP39-219ENST00000496047 CCDC125Q86Z20 511 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 NFATC2IPQ8NCF5 419 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 SSH3Q8TE77 659 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 USP44Q9H0E7 712 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 BCL11AQ9H165 835 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 OSBPL3Q9H4L5 887 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 EXOC6BQ9Y2D4 811 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 KCPQ6ZWJ8 1503 aa8.48□□□□□ -1.05
USP39-219ENST00000496047 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.47□□□□□ -1.05
USP39-219ENST00000496047 NUTM2BA6NNL0 878 aaPredicted RBP8.47□□□□□ -1.05
USP39-219ENST00000496047 NUTM2EB1AL46 878 aaPredicted RBP8.47□□□□□ -1.05
USP39-219ENST00000496047 GRM8O00222 908 aa8.47□□□□□ -1.05
USP39-219ENST00000496047 ERC2O15083 957 aa8.47□□□□□ -1.05
USP39-219ENST00000496047 CYP27B1O15528 508 aa8.47□□□□□ -1.05
USP39-219ENST00000496047 SURF6O75683 361 aaKnown RBP8.47□□□□□ -1.05
USP39-219ENST00000496047 AIMP1Q12904 312 aaKnown RBP8.47□□□□□ -1.05
USP39-219ENST00000496047 TBC1D9Q6ZT07 1266 aa8.47□□□□□ -1.05
USP39-219ENST00000496047 PPP1R42Q7Z4L9 355 aa8.47□□□□□ -1.05
USP39-219ENST00000496047 NUTM2AQ8IVF1 878 aaPredicted RBP8.47□□□□□ -1.05
USP39-219ENST00000496047 IL27Q8NEV9 243 aa8.47□□□□□ -1.05
USP39-219ENST00000496047 CDCA7Q9BWT1 371 aaPredicted RBP8.47□□□□□ -1.05
USP39-219ENST00000496047 TEX13AQ9BXU3 409 aaPredicted RBP8.47□□□□□ -1.05
USP39-219ENST00000496047 TMOD3Q9NYL9 352 aa8.47□□□□□ -1.05
USP39-219ENST00000496047 SPEF2Q9C093 1822 aa8.47□□□□□ -1.05
USP39-219ENST00000496047 CICQ96RK0 1608 aaPredicted RBP8.47□□□□□ -1.05
USP39-219ENST00000496047 TRIM6-TRIM34B2RNG4 842 aa8.46□□□□□ -1.06
USP39-219ENST00000496047 HSP90AA1P07900 732 aaKnown RBP8.46□□□□□ -1.06
USP39-219ENST00000496047 MYL6BP14649 208 aa8.46□□□□□ -1.06
USP39-219ENST00000496047 PDE1AP54750 535 aa8.46□□□□□ -1.06
USP39-219ENST00000496047 SLC39A6Q13433 755 aa8.46□□□□□ -1.06
USP39-219ENST00000496047 MTX1Q13505 466 aa8.46□□□□□ -1.06
USP39-219ENST00000496047 CNTROBQ8N137 903 aa8.46□□□□□ -1.06
USP39-219ENST00000496047 CLASRPQ8N2M8 674 aaKnown RBP8.46□□□□□ -1.06
USP39-219ENST00000496047 KCNV2Q8TDN2 545 aa8.46□□□□□ -1.06
USP39-219ENST00000496047 CRISPLD2Q9H0B8 497 aa8.46□□□□□ -1.06
USP39-219ENST00000496047 TNS2Q63HR2 1409 aa8.46□□□□□ -1.06
USP39-219ENST00000496047 LAMB2P55268 1798 aa8.45□□□□□ -1.06
USP39-219ENST00000496047 PNMA6EA0A0J9YXQ4 647 aa8.45□□□□□ -1.06
USP39-219ENST00000496047 SMARCA5O60264 1052 aaPredicted RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms