RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 AMIGO3Q86WK7 504 aa15.85■□□□□ 0.13
VPS52-220ENST00000493674 C9orf78Q9NZ63 289 aaPredicted RBP15.85■□□□□ 0.13
VPS52-220ENST00000493674 TBC1D2BQ9UPU7 963 aa15.85■□□□□ 0.13
VPS52-220ENST00000493674 ADRA2BP18089 450 aa15.84■□□□□ 0.13
VPS52-220ENST00000493674 ATP8B2P98198 1209 aa15.84■□□□□ 0.13
VPS52-220ENST00000493674 HDAC5Q9UQL6 1122 aa15.84■□□□□ 0.13
VPS52-220ENST00000493674 UBN2Q6ZU65 1347 aa15.84■□□□□ 0.13
VPS52-220ENST00000493674 POLA2Q14181 598 aa15.83■□□□□ 0.12
VPS52-220ENST00000493674 CLEC4GQ6UXB4 293 aa15.83■□□□□ 0.12
VPS52-220ENST00000493674 NPM2Q86SE8 214 aaKnown RBP15.83■□□□□ 0.12
VPS52-220ENST00000493674 NLRP10Q86W26 655 aa15.83■□□□□ 0.12
VPS52-220ENST00000493674 SSH3Q8TE77 659 aa15.83■□□□□ 0.12
VPS52-220ENST00000493674 SUCLG2Q96I99 432 aa15.83■□□□□ 0.12
VPS52-220ENST00000493674 DCTPP1Q9H773 170 aa15.83■□□□□ 0.12
VPS52-220ENST00000493674 NARFQ9UHQ1 456 aa15.83■□□□□ 0.12
VPS52-220ENST00000493674 RTCBQ9Y3I0 505 aaKnown RBP15.83■□□□□ 0.12
VPS52-220ENST00000493674 AK9Q5TCS8 1911 aa15.83■□□□□ 0.12
VPS52-220ENST00000493674 PNMA6EA0A0J9YXQ4 647 aa15.82■□□□□ 0.12
VPS52-220ENST00000493674 PCCAP05165 728 aaPredicted RBP15.82■□□□□ 0.12
VPS52-220ENST00000493674 RABL6Q3YEC7 729 aaPredicted RBP15.82■□□□□ 0.12
VPS52-220ENST00000493674 GCC1Q96CN9 775 aa15.82■□□□□ 0.12
VPS52-220ENST00000493674 AK7Q96M32 723 aa15.82■□□□□ 0.12
VPS52-220ENST00000493674 BCL2L12Q9HB09 334 aa15.82■□□□□ 0.12
VPS52-220ENST00000493674 CDHR2Q9BYE9 1310 aa15.82■□□□□ 0.12
VPS52-220ENST00000493674 TAF1P21675 1872 aa15.82■□□□□ 0.12
VPS52-220ENST00000493674 ANKRD31Q8N7Z5 1873 aa15.82■□□□□ 0.12
VPS52-220ENST00000493674 HMMRO75330 724 aa15.81■□□□□ 0.12
VPS52-220ENST00000493674 SSFA2P28290 1259 aa15.81■□□□□ 0.12
VPS52-220ENST00000493674 UBE3BQ7Z3V4 1068 aa15.81■□□□□ 0.12
VPS52-220ENST00000493674 AKT1S1Q96B36 256 aa15.81■□□□□ 0.12
VPS52-220ENST00000493674 PLA2G12BQ9BX93 195 aa15.81■□□□□ 0.12
VPS52-220ENST00000493674 USP42Q9H9J4 1324 aaKnown RBP15.81■□□□□ 0.12
VPS52-220ENST00000493674 TNRC6CQ9HCJ0 1690 aaKnown RBP15.81■□□□□ 0.12
VPS52-220ENST00000493674 EPHA10Q5JZY3 1008 aa15.8■□□□□ 0.12
VPS52-220ENST00000493674 PPP1R42Q7Z4L9 355 aa15.8■□□□□ 0.12
VPS52-220ENST00000493674 ARHGEF1Q92888 912 aaKnown RBP15.8■□□□□ 0.12
VPS52-220ENST00000493674 BICC1Q9H694 974 aaKnown RBP15.8■□□□□ 0.12
VPS52-220ENST00000493674 ZNF652Q9Y2D9 606 aa15.8■□□□□ 0.12
VPS52-220ENST00000493674 FOXO4P98177 505 aa15.79■□□□□ 0.12
VPS52-220ENST00000493674 ZNF827Q17R98 1081 aa15.79■□□□□ 0.12
VPS52-220ENST00000493674 PARP10Q53GL7 1025 aa15.79■□□□□ 0.12
VPS52-220ENST00000493674 ZBTB38Q8NAP3 1195 aaPredicted RBP15.79■□□□□ 0.12
VPS52-220ENST00000493674 ARAP2Q8WZ64 1704 aa15.78■□□□□ 0.12
VPS52-220ENST00000493674 GPTP24298 496 aa15.78■□□□□ 0.12
VPS52-220ENST00000493674 NUCB1Q02818 461 aa15.78■□□□□ 0.12
VPS52-220ENST00000493674 SMIM5Q71RC9 77 aa15.78■□□□□ 0.12
VPS52-220ENST00000493674 ARXQ96QS3 562 aa15.78■□□□□ 0.12
VPS52-220ENST00000493674 PDZRN3Q9UPQ7 1066 aa15.78■□□□□ 0.12
VPS52-220ENST00000493674 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.77■□□□□ 0.12
VPS52-220ENST00000493674 NTSR2O95665 410 aa15.77■□□□□ 0.12
VPS52-220ENST00000493674 TRAPPC3LQ5T215 181 aa15.77■□□□□ 0.12
VPS52-220ENST00000493674 STK32BQ9NY57 414 aa15.77■□□□□ 0.12
VPS52-220ENST00000493674 SRP68Q9UHB9 627 aaKnown RBP15.77■□□□□ 0.12
VPS52-220ENST00000493674 NOP58Q9Y2X3 529 aaKnown RBP15.77■□□□□ 0.12
VPS52-220ENST00000493674 SRGAP3O43295 1099 aa15.76■□□□□ 0.11
VPS52-220ENST00000493674 SUSD4Q5VX71 490 aa15.76■□□□□ 0.11
VPS52-220ENST00000493674 USPL1Q5W0Q7 1092 aa15.76■□□□□ 0.11
VPS52-220ENST00000493674 JARID2Q92833 1246 aaPredicted RBP15.76■□□□□ 0.11
VPS52-220ENST00000493674 ANO8Q9HCE9 1232 aaPredicted RBP15.76■□□□□ 0.11
VPS52-220ENST00000493674 RIC1Q4ADV7 1423 aa15.76■□□□□ 0.11
VPS52-220ENST00000493674 ZPR1O75312 459 aa15.75■□□□□ 0.11
VPS52-220ENST00000493674 RFX5P48382 616 aaPredicted RBP15.75■□□□□ 0.11
VPS52-220ENST00000493674 R3HDM1Q15032 1099 aaKnown RBP15.75■□□□□ 0.11
VPS52-220ENST00000493674 NIP7Q9Y221 180 aaKnown RBP eCLIP15.75■□□□□ 0.11
VPS52-220ENST00000493674 RFC4P35249 363 aa15.74■□□□□ 0.11
VPS52-220ENST00000493674 SLC15A2Q16348 729 aa15.74■□□□□ 0.11
VPS52-220ENST00000493674 TBC1D9BQ66K14 1250 aa15.74■□□□□ 0.11
VPS52-220ENST00000493674 SKAP1Q86WV1 359 aa15.74■□□□□ 0.11
VPS52-220ENST00000493674 FAM89AQ96GI7 184 aa15.74■□□□□ 0.11
VPS52-220ENST00000493674 COL4A1P02462 1669 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 SH3TC1Q8TE82 1336 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 PSDA5PKW4 1024 aaPredicted RBP15.73■□□□□ 0.11
VPS52-220ENST00000493674 PHF14O94880 888 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 CSF1RP07333 972 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 PDE4AP27815 886 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 CHD1LQ86WJ1 897 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 SYNE4Q8N205 404 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 UTP14AQ9BVJ6 771 aaKnown RBP15.73■□□□□ 0.11
VPS52-220ENST00000493674 COPRSQ9NQ92 184 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 TRMT112Q9UI30 125 aaKnown RBP15.73■□□□□ 0.11
VPS52-220ENST00000493674 COL11A2P13942 1736 aaPredicted RBP15.73■□□□□ 0.11
VPS52-220ENST00000493674 CARMIL3Q8ND23 1372 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 RTL9Q8NET4 1388 aa15.73■□□□□ 0.11
VPS52-220ENST00000493674 SRCAPQ6ZRS2 3230 aa15.72■□□□□ 0.11
VPS52-220ENST00000493674 CACNA1SQ13698 1873 aa15.72■□□□□ 0.11
VPS52-220ENST00000493674 GYS1P13807 737 aa15.72■□□□□ 0.11
VPS52-220ENST00000493674 LMBR1LQ6UX01 489 aa15.72■□□□□ 0.11
VPS52-220ENST00000493674 FLAD1Q8NFF5 587 aa15.72■□□□□ 0.11
VPS52-220ENST00000493674 EXOC6BQ9Y2D4 811 aa15.72■□□□□ 0.11
VPS52-220ENST00000493674 KIF13BQ9NQT8 1826 aa15.72■□□□□ 0.11
VPS52-220ENST00000493674 DLEC1Q9Y238 1755 aa15.72■□□□□ 0.11
VPS52-220ENST00000493674 PNPLA7Q6ZV29 1317 aa15.71■□□□□ 0.11
VPS52-220ENST00000493674 IRS4O14654 1257 aaPredicted RBP15.71■□□□□ 0.11
VPS52-220ENST00000493674 RAB11FIP3O75154 756 aa15.71■□□□□ 0.11
VPS52-220ENST00000493674 RTL5Q5HYW3 569 aaPredicted RBP15.71■□□□□ 0.11
VPS52-220ENST00000493674 ABCC12Q96J65 1359 aa15.71■□□□□ 0.11
VPS52-220ENST00000493674 LRRC37AA6NMS7 1700 aa15.71■□□□□ 0.1
VPS52-220ENST00000493674 PDE8AO60658 829 aa15.7■□□□□ 0.1
VPS52-220ENST00000493674 CTSWP56202 376 aa15.7■□□□□ 0.1
VPS52-220ENST00000493674 PTPN12Q05209 780 aaKnown RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms