RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 RPGRQ92834 1020 aaKnown RBP18.35■□□□□ 0.53
BRCA1-218ENST00000489037 NLRP3Q96P20 1036 aa18.35■□□□□ 0.53
BRCA1-218ENST00000489037 PHAXQ9H814 394 aaKnown RBP18.35■□□□□ 0.53
BRCA1-218ENST00000489037 ZNF219Q9P2Y4 722 aaPredicted RBP18.35■□□□□ 0.53
BRCA1-218ENST00000489037 TRMT112Q9UI30 125 aaKnown RBP18.35■□□□□ 0.53
BRCA1-218ENST00000489037 ARFGEF2Q9Y6D5 1785 aa18.35■□□□□ 0.53
BRCA1-218ENST00000489037 C21orf2O43822 256 aa18.34■□□□□ 0.53
BRCA1-218ENST00000489037 PRPF40BQ6NWY9 871 aaKnown RBP18.34■□□□□ 0.53
BRCA1-218ENST00000489037 SBF1O95248 1867 aa18.34■□□□□ 0.53
BRCA1-218ENST00000489037 CCDC88AQ3V6T2 1871 aa18.34■□□□□ 0.53
BRCA1-218ENST00000489037 SLX4Q8IY92 1834 aa18.34■□□□□ 0.53
BRCA1-218ENST00000489037 ABCC12Q96J65 1359 aa18.33■□□□□ 0.53
BRCA1-218ENST00000489037 EXOSC9Q06265 439 aaKnown RBP18.33■□□□□ 0.52
BRCA1-218ENST00000489037 RIC1Q4ADV7 1423 aa18.32■□□□□ 0.52
BRCA1-218ENST00000489037 SH3TC1Q8TE82 1336 aa18.32■□□□□ 0.52
BRCA1-218ENST00000489037 TCERG1O14776 1098 aaKnown RBP18.32■□□□□ 0.52
BRCA1-218ENST00000489037 SLC4A2P04920 1241 aa18.32■□□□□ 0.52
BRCA1-218ENST00000489037 C9orf131Q5VYM1 1079 aa18.32■□□□□ 0.52
BRCA1-218ENST00000489037 RBM17Q96I25 401 aaKnown RBP18.32■□□□□ 0.52
BRCA1-218ENST00000489037 RNF181Q9P0P0 153 aa18.32■□□□□ 0.52
BRCA1-218ENST00000489037 ATP5J2-PTCD1G3V325 749 aa18.31■□□□□ 0.52
BRCA1-218ENST00000489037 SLC10A5Q5PT55 438 aa18.31■□□□□ 0.52
BRCA1-218ENST00000489037 ISCA1Q9BUE6 129 aa18.31■□□□□ 0.52
BRCA1-218ENST00000489037 VAMP4O75379 141 aa18.3■□□□□ 0.52
BRCA1-218ENST00000489037 LMNB1P20700 586 aa18.3■□□□□ 0.52
BRCA1-218ENST00000489037 TRIM28Q13263 835 aaKnown RBP18.3■□□□□ 0.52
BRCA1-218ENST00000489037 CRY2Q49AN0 593 aa18.3■□□□□ 0.52
BRCA1-218ENST00000489037 MYD88Q99836 296 aa18.3■□□□□ 0.52
BRCA1-218ENST00000489037 TMX4Q9H1E5 349 aaPredicted RBP18.3■□□□□ 0.52
BRCA1-218ENST00000489037 GPBP1L1Q9HC44 474 aaPredicted RBP18.3■□□□□ 0.52
BRCA1-218ENST00000489037 TNRC6CQ9HCJ0 1690 aaKnown RBP18.3■□□□□ 0.52
BRCA1-218ENST00000489037 ADCY9O60503 1353 aa18.3■□□□□ 0.52
BRCA1-218ENST00000489037 FER1L6Q2WGJ9 1857 aa18.29■□□□□ 0.52
BRCA1-218ENST00000489037 HSP90B1P14625 803 aaKnown RBP18.29■□□□□ 0.52
BRCA1-218ENST00000489037 RASSF7Q02833 373 aa18.29■□□□□ 0.52
BRCA1-218ENST00000489037 NEXNQ0ZGT2 675 aa18.29■□□□□ 0.52
BRCA1-218ENST00000489037 CCDC93Q567U6 631 aa18.29■□□□□ 0.52
BRCA1-218ENST00000489037 KSR2Q6VAB6 950 aa18.29■□□□□ 0.52
BRCA1-218ENST00000489037 ZNF526Q8TF50 670 aaPredicted RBP18.29■□□□□ 0.52
BRCA1-218ENST00000489037 SPINK5Q9NQ38 1064 aaPredicted RBP18.29■□□□□ 0.52
BRCA1-218ENST00000489037 ZNF521Q96K83 1311 aa18.28■□□□□ 0.52
BRCA1-218ENST00000489037 E9PSI1 815 aa18.28■□□□□ 0.52
BRCA1-218ENST00000489037 HOXA10P31260 410 aaPredicted RBP18.28■□□□□ 0.52
BRCA1-218ENST00000489037 CRAMP1Q96RY5 1269 aa18.28■□□□□ 0.52
BRCA1-218ENST00000489037 METTL22Q9BUU2 404 aaPredicted RBP18.28■□□□□ 0.52
BRCA1-218ENST00000489037 TAOK3Q9H2K8 898 aa18.28■□□□□ 0.52
BRCA1-218ENST00000489037 MAP3K2Q9Y2U5 619 aa18.28■□□□□ 0.52
BRCA1-218ENST00000489037 PI4KAP2A4QPH2 592 aa18.27■□□□□ 0.52
BRCA1-218ENST00000489037 HCLS1P14317 486 aaPredicted RBP18.27■□□□□ 0.52
BRCA1-218ENST00000489037 MIER1Q8N108 512 aa18.27■□□□□ 0.52
BRCA1-218ENST00000489037 PI4KAP1Q8N8J0 262 aa18.27■□□□□ 0.52
BRCA1-218ENST00000489037 CCDC191Q8NCU4 936 aa18.27■□□□□ 0.52
BRCA1-218ENST00000489037 NFKBIEO00221 500 aa18.26■□□□□ 0.51
BRCA1-218ENST00000489037 FLIIQ13045 1269 aa18.26■□□□□ 0.51
BRCA1-218ENST00000489037 FKBP5Q13451 457 aaPredicted RBP18.26■□□□□ 0.51
BRCA1-218ENST00000489037 CC2D2BQ6DHV5 1058 aa18.26■□□□□ 0.51
BRCA1-218ENST00000489037 RTKN2Q8IZC4 609 aa18.26■□□□□ 0.51
BRCA1-218ENST00000489037 ZNF428Q96B54 188 aa18.26■□□□□ 0.51
BRCA1-218ENST00000489037 FAM89AQ96GI7 184 aa18.26■□□□□ 0.51
BRCA1-218ENST00000489037 CWC25Q9NXE8 425 aaPredicted RBP18.26■□□□□ 0.51
BRCA1-218ENST00000489037 LTBP3Q9NS15 1303 aa18.25■□□□□ 0.51
BRCA1-218ENST00000489037 DICER1Q9UPY3 1922 aaKnown RBP18.25■□□□□ 0.51
BRCA1-218ENST00000489037 LAMB2P55268 1798 aa18.25■□□□□ 0.51
BRCA1-218ENST00000489037 DDX46Q7L014 1031 aaKnown RBP18.25■□□□□ 0.51
BRCA1-218ENST00000489037 C7orf43Q8WVR3 580 aa18.25■□□□□ 0.51
BRCA1-218ENST00000489037 ZC3H4Q9UPT8 1303 aaKnown RBP18.24■□□□□ 0.51
BRCA1-218ENST00000489037 GRIPAP1Q4V328 841 aa18.24■□□□□ 0.51
BRCA1-218ENST00000489037 RTL5Q5HYW3 569 aaPredicted RBP18.24■□□□□ 0.51
BRCA1-218ENST00000489037 G2E3Q7L622 706 aa18.24■□□□□ 0.51
BRCA1-218ENST00000489037 SYNE4Q8N205 404 aa18.24■□□□□ 0.51
BRCA1-218ENST00000489037 ZBTB38Q8NAP3 1195 aaPredicted RBP18.24■□□□□ 0.51
BRCA1-218ENST00000489037 KDM2BQ8NHM5 1336 aa18.23■□□□□ 0.51
BRCA1-218ENST00000489037 IRS4O14654 1257 aaPredicted RBP18.23■□□□□ 0.51
BRCA1-218ENST00000489037 PPEF1O14829 653 aaPredicted RBP18.23■□□□□ 0.51
BRCA1-218ENST00000489037 FKBP4Q02790 459 aaKnown RBP eCLIP18.23■□□□□ 0.51
BRCA1-218ENST00000489037 C3orf67Q6ZVT6 689 aa18.23■□□□□ 0.51
BRCA1-218ENST00000489037 BBOX1O75936 387 aa18.22■□□□□ 0.51
BRCA1-218ENST00000489037 PCCAP05165 728 aaPredicted RBP18.22■□□□□ 0.51
BRCA1-218ENST00000489037 SLFN5Q08AF3 891 aa18.22■□□□□ 0.51
BRCA1-218ENST00000489037 DDX60Q8IY21 1712 aaKnown RBP18.22■□□□□ 0.51
BRCA1-218ENST00000489037 DNAAF4Q8WXU2 420 aa18.21■□□□□ 0.51
BRCA1-218ENST00000489037 ABCC4O15439 1325 aa18.21■□□□□ 0.51
BRCA1-218ENST00000489037 SF3B3Q15393 1217 aaKnown RBP18.2■□□□□ 0.5
BRCA1-218ENST00000489037 DPY19L2Q6NUT2 758 aa18.2■□□□□ 0.5
BRCA1-218ENST00000489037 TIAM2Q8IVF5 1701 aa18.2■□□□□ 0.5
BRCA1-218ENST00000489037 PDE8AO60658 829 aa18.19■□□□□ 0.5
BRCA1-218ENST00000489037 GRAPQ13588 217 aa18.19■□□□□ 0.5
BRCA1-218ENST00000489037 OLFM4Q6UX06 510 aa18.19■□□□□ 0.5
BRCA1-218ENST00000489037 TMC4Q7Z404 712 aa18.19■□□□□ 0.5
BRCA1-218ENST00000489037 GRAPLQ8TC17 118 aaPredicted RBP18.19■□□□□ 0.5
BRCA1-218ENST00000489037 TAF1P21675 1872 aa18.18■□□□□ 0.5
BRCA1-218ENST00000489037 NEURL1BA8MQ27 555 aa18.18■□□□□ 0.5
BRCA1-218ENST00000489037 IGKV5-2P06315 115 aa18.18■□□□□ 0.5
BRCA1-218ENST00000489037 PRELPP51888 382 aa18.18■□□□□ 0.5
BRCA1-218ENST00000489037 PSMD1Q99460 953 aa18.18■□□□□ 0.5
BRCA1-218ENST00000489037 ATP6V0A2Q9Y487 856 aa18.18■□□□□ 0.5
BRCA1-218ENST00000489037 MYH3P11055 1940 aa18.17■□□□□ 0.5
BRCA1-218ENST00000489037 GLTPD2A6NH11 291 aa18.17■□□□□ 0.5
BRCA1-218ENST00000489037 CWF19L2Q2TBE0 894 aaKnown RBP18.17■□□□□ 0.5
BRCA1-218ENST00000489037 CCDC152Q4G0S7 254 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms