RNA–Protein interactions for RNA: ENST00000488912.5

COL21A1-211, Transcript of collagen type XXI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL21A1, Length 2,327 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1-211ENST00000488912 APBB1O00213 710 aa13.58□□□□□ -0.23
COL21A1-211ENST00000488912 TRIM28Q13263 835 aaKnown RBP13.58□□□□□ -0.23
COL21A1-211ENST00000488912 HSP90AB3PQ58FF7 597 aa13.58□□□□□ -0.23
COL21A1-211ENST00000488912 EPHA10Q5JZY3 1008 aa13.58□□□□□ -0.23
COL21A1-211ENST00000488912 C4AP0C0L4 1744 aa13.58□□□□□ -0.24
COL21A1-211ENST00000488912 GNPATO15228 680 aa13.58□□□□□ -0.24
COL21A1-211ENST00000488912 SMIM5Q71RC9 77 aa13.58□□□□□ -0.24
COL21A1-211ENST00000488912 UBR3Q6ZT12 1888 aa13.57□□□□□ -0.24
COL21A1-211ENST00000488912 NLRP10Q86W26 655 aa13.57□□□□□ -0.24
COL21A1-211ENST00000488912 AMIGO3Q86WK7 504 aa13.57□□□□□ -0.24
COL21A1-211ENST00000488912 UBN2Q6ZU65 1347 aa13.56□□□□□ -0.24
COL21A1-211ENST00000488912 RPS6KA4O75676 772 aa13.56□□□□□ -0.24
COL21A1-211ENST00000488912 SMARCA5O60264 1052 aaPredicted RBP13.56□□□□□ -0.24
COL21A1-211ENST00000488912 RABL6Q3YEC7 729 aaPredicted RBP13.56□□□□□ -0.24
COL21A1-211ENST00000488912 SLC27A3Q5K4L6 730 aa13.56□□□□□ -0.24
COL21A1-211ENST00000488912 ZNF34Q8IZ26 560 aa13.56□□□□□ -0.24
COL21A1-211ENST00000488912 MYH3P11055 1940 aa13.56□□□□□ -0.24
COL21A1-211ENST00000488912 SURF6O75683 361 aaKnown RBP13.55□□□□□ -0.24
COL21A1-211ENST00000488912 FAM89AQ96GI7 184 aa13.55□□□□□ -0.24
COL21A1-211ENST00000488912 PCCAP05165 728 aaPredicted RBP13.55□□□□□ -0.24
COL21A1-211ENST00000488912 DEKP35659 375 aaKnown RBP13.55□□□□□ -0.24
COL21A1-211ENST00000488912 FOXO4P98177 505 aa13.55□□□□□ -0.24
COL21A1-211ENST00000488912 ZBTB38Q8NAP3 1195 aaPredicted RBP13.55□□□□□ -0.24
COL21A1-211ENST00000488912 RTCBQ9Y3I0 505 aaKnown RBP13.55□□□□□ -0.24
COL21A1-211ENST00000488912 PROM2Q8N271 834 aa13.54□□□□□ -0.24
COL21A1-211ENST00000488912 AK7Q96M32 723 aa13.54□□□□□ -0.24
COL21A1-211ENST00000488912 PA2G4Q9UQ80 394 aaKnown RBP13.54□□□□□ -0.24
COL21A1-211ENST00000488912 APBA3O96018 575 aa13.53□□□□□ -0.24
COL21A1-211ENST00000488912 TXNRD1Q16881 649 aa13.53□□□□□ -0.24
COL21A1-211ENST00000488912 SYNE4Q8N205 404 aa13.53□□□□□ -0.24
COL21A1-211ENST00000488912 ZBTB47Q9UFB7 747 aaPredicted RBP13.53□□□□□ -0.24
COL21A1-211ENST00000488912 LMBR1LQ6UX01 489 aa13.53□□□□□ -0.24
COL21A1-211ENST00000488912 C16orf71Q8IYS4 520 aaPredicted RBP13.53□□□□□ -0.24
COL21A1-211ENST00000488912 LRRCC1Q9C099 1032 aa13.53□□□□□ -0.24
COL21A1-211ENST00000488912 ZNF652Q9Y2D9 606 aa13.53□□□□□ -0.24
COL21A1-211ENST00000488912 NOP58Q9Y2X3 529 aaKnown RBP13.53□□□□□ -0.24
COL21A1-211ENST00000488912 RGPD3A6NKT7 1758 aaPredicted RBP13.53□□□□□ -0.24
COL21A1-211ENST00000488912 RGPD4Q7Z3J3 1758 aa13.53□□□□□ -0.24
COL21A1-211ENST00000488912 PLSCR1O15162 318 aa13.52□□□□□ -0.24
COL21A1-211ENST00000488912 PHF14O94880 888 aa13.52□□□□□ -0.24
COL21A1-211ENST00000488912 KLHDC4Q8TBB5 520 aa13.52□□□□□ -0.24
COL21A1-211ENST00000488912 SRP68Q9UHB9 627 aaKnown RBP13.52□□□□□ -0.24
COL21A1-211ENST00000488912 NARFQ9UHQ1 456 aa13.52□□□□□ -0.24
COL21A1-211ENST00000488912 TRMT112Q9UI30 125 aaKnown RBP13.52□□□□□ -0.24
COL21A1-211ENST00000488912 NIP7Q9Y221 180 aaKnown RBP eCLIP13.52□□□□□ -0.24
COL21A1-211ENST00000488912 CDHR2Q9BYE9 1310 aa13.52□□□□□ -0.25
COL21A1-211ENST00000488912 USPL1Q5W0Q7 1092 aa13.52□□□□□ -0.25
COL21A1-211ENST00000488912 CLEC4GQ6UXB4 293 aa13.52□□□□□ -0.25
COL21A1-211ENST00000488912 OTUD7AQ8TE49 926 aaPredicted RBP13.52□□□□□ -0.25
COL21A1-211ENST00000488912 ARHGEF1Q92888 912 aaKnown RBP13.52□□□□□ -0.25
COL21A1-211ENST00000488912 BCL2L12Q9HB09 334 aa13.52□□□□□ -0.25
COL21A1-211ENST00000488912 DDX60Q8IY21 1712 aaKnown RBP13.51□□□□□ -0.25
COL21A1-211ENST00000488912 RAB11FIP3O75154 756 aa13.51□□□□□ -0.25
COL21A1-211ENST00000488912 RFX5P48382 616 aaPredicted RBP13.51□□□□□ -0.25
COL21A1-211ENST00000488912 SUSD4Q5VX71 490 aa13.51□□□□□ -0.25
COL21A1-211ENST00000488912 CHMP3Q9Y3E7 222 aa13.51□□□□□ -0.25
COL21A1-211ENST00000488912 LAMB2P55268 1798 aa13.51□□□□□ -0.25
COL21A1-211ENST00000488912 RHPN1Q8TCX5 695 aa13.51□□□□□ -0.25
COL21A1-211ENST00000488912 UBE2Q2Q8WVN8 375 aa13.51□□□□□ -0.25
COL21A1-211ENST00000488912 PLA2G12BQ9BX93 195 aa13.51□□□□□ -0.25
COL21A1-211ENST00000488912 COL24A1Q17RW2 1714 aa13.51□□□□□ -0.25
COL21A1-211ENST00000488912 FAM177BA6PVY3 158 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 ZPR1O75312 459 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 OS9Q13438 667 aaPredicted RBP13.5□□□□□ -0.25
COL21A1-211ENST00000488912 PARP10Q53GL7 1025 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 HSP90AB4PQ58FF6 505 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 PLEKHM2Q8IWE5 1019 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 SIL1Q9H173 461 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 IL1RAPL2Q9NP60 686 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 TUBGCP6Q96RT7 1819 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 USP42Q9H9J4 1324 aaKnown RBP13.5□□□□□ -0.25
COL21A1-211ENST00000488912 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.5□□□□□ -0.25
COL21A1-211ENST00000488912 IRS4O14654 1257 aaPredicted RBP13.5□□□□□ -0.25
COL21A1-211ENST00000488912 RGL2O15211 777 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 TRAPPC3LQ5T215 181 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 KIF1BPQ96EK5 621 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 CASZ1Q86V15 1759 aa13.5□□□□□ -0.25
COL21A1-211ENST00000488912 RFC4P35249 363 aa13.49□□□□□ -0.25
COL21A1-211ENST00000488912 PTPN12Q05209 780 aaKnown RBP13.49□□□□□ -0.25
COL21A1-211ENST00000488912 C8orf34Q49A92 452 aa13.49□□□□□ -0.25
COL21A1-211ENST00000488912 TBC1D9BQ66K14 1250 aa13.49□□□□□ -0.25
COL21A1-211ENST00000488912 UTP14AQ9BVJ6 771 aaKnown RBP13.49□□□□□ -0.25
COL21A1-211ENST00000488912 COPRSQ9NQ92 184 aa13.49□□□□□ -0.25
COL21A1-211ENST00000488912 SH3TC1Q8TE82 1336 aa13.49□□□□□ -0.25
COL21A1-211ENST00000488912 NTSR2O95665 410 aa13.48□□□□□ -0.25
COL21A1-211ENST00000488912 ADRA2BP18089 450 aa13.48□□□□□ -0.25
COL21A1-211ENST00000488912 FAM161AQ3B820 660 aa13.48□□□□□ -0.25
COL21A1-211ENST00000488912 BACH2Q9BYV9 841 aa13.48□□□□□ -0.25
COL21A1-211ENST00000488912 BICDL1Q6ZP65 573 aa13.48□□□□□ -0.25
COL21A1-211ENST00000488912 CCDC85AQ96PX6 553 aaPredicted RBP13.48□□□□□ -0.25
COL21A1-211ENST00000488912 SALL3Q9BXA9 1300 aa13.48□□□□□ -0.25
COL21A1-211ENST00000488912 SASH1O94885 1247 aa13.47□□□□□ -0.25
COL21A1-211ENST00000488912 CSF1RP07333 972 aa13.47□□□□□ -0.25
COL21A1-211ENST00000488912 CTSWP56202 376 aa13.47□□□□□ -0.25
COL21A1-211ENST00000488912 G3BP1Q13283 466 aaKnown RBP eCLIP13.47□□□□□ -0.25
COL21A1-211ENST00000488912 ERC1Q8IUD2 1116 aa13.47□□□□□ -0.25
COL21A1-211ENST00000488912 SSFA2P28290 1259 aa13.47□□□□□ -0.25
COL21A1-211ENST00000488912 ZNF827Q17R98 1081 aa13.47□□□□□ -0.25
COL21A1-211ENST00000488912 NUTM1Q86Y26 1132 aa13.47□□□□□ -0.25
COL21A1-211ENST00000488912 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms