RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 SNRPNP63162 240 aaKnown RBP9.62□□□□□ -0.87
PTPN4-212ENST00000488896 NAA30Q147X3 362 aaPredicted RBP9.62□□□□□ -0.87
PTPN4-212ENST00000488896 CXXC1Q9P0U4 656 aaPredicted RBP9.62□□□□□ -0.87
PTPN4-212ENST00000488896 LRFN2Q9ULH4 789 aa9.62□□□□□ -0.87
PTPN4-212ENST00000488896 IDH3AP50213 366 aa9.61□□□□□ -0.87
PTPN4-212ENST00000488896 KCNMA1Q12791 1236 aa9.61□□□□□ -0.87
PTPN4-212ENST00000488896 C11orf91Q3C1V1 193 aa9.61□□□□□ -0.87
PTPN4-212ENST00000488896 COX20Q5RI15 118 aa9.61□□□□□ -0.87
PTPN4-212ENST00000488896 CLP1Q92989 425 aaKnown RBP9.61□□□□□ -0.87
PTPN4-212ENST00000488896 BHMTQ93088 406 aa9.61□□□□□ -0.87
PTPN4-212ENST00000488896 BTBD6Q96KE9 485 aa9.61□□□□□ -0.87
PTPN4-212ENST00000488896 SAP130Q9H0E3 1048 aa9.61□□□□□ -0.87
PTPN4-212ENST00000488896 AVENQ9NQS1 362 aaPredicted RBP9.61□□□□□ -0.87
PTPN4-212ENST00000488896 SLAIN2Q9P270 581 aa9.61□□□□□ -0.87
PTPN4-212ENST00000488896 ATP2B4P23634 1241 aa9.6□□□□□ -0.87
PTPN4-212ENST00000488896 RASSF7Q02833 373 aa9.6□□□□□ -0.87
PTPN4-212ENST00000488896 IER5Q5VY09 327 aa9.6□□□□□ -0.87
PTPN4-212ENST00000488896 ERICH6Q7L0X2 663 aa9.6□□□□□ -0.87
PTPN4-212ENST00000488896 BEND7Q8N7W2 519 aaPredicted RBP9.6□□□□□ -0.87
PTPN4-212ENST00000488896 IFT43Q96FT9 208 aa9.6□□□□□ -0.87
PTPN4-212ENST00000488896 IGFLR1Q9H665 355 aa9.6□□□□□ -0.87
PTPN4-212ENST00000488896 DMGDHQ9UI17 866 aaKnown RBP9.6□□□□□ -0.87
PTPN4-212ENST00000488896 MICAL2O94851 1124 aa9.59□□□□□ -0.87
PTPN4-212ENST00000488896 KCNQ4P56696 695 aa9.59□□□□□ -0.87
PTPN4-212ENST00000488896 TBC1D8BQ0IIM8 1120 aa9.59□□□□□ -0.87
PTPN4-212ENST00000488896 NEUROD1Q13562 356 aa9.59□□□□□ -0.87
PTPN4-212ENST00000488896 MYO19Q96H55 970 aa9.59□□□□□ -0.87
PTPN4-212ENST00000488896 USP20Q9Y2K6 914 aa9.59□□□□□ -0.87
PTPN4-212ENST00000488896 CARNS1A5YM72 827 aa9.58□□□□□ -0.88
PTPN4-212ENST00000488896 PHF20L1A8MW92 1017 aa9.58□□□□□ -0.88
PTPN4-212ENST00000488896 GDF11O95390 407 aa9.58□□□□□ -0.88
PTPN4-212ENST00000488896 GSK3AP49840 483 aa9.58□□□□□ -0.88
PTPN4-212ENST00000488896 CHSY3Q70JA7 882 aa9.58□□□□□ -0.88
PTPN4-212ENST00000488896 PPP1R15AO75807 674 aaPredicted RBP9.57□□□□□ -0.88
PTPN4-212ENST00000488896 C16orf46Q6P387 395 aa9.57□□□□□ -0.88
PTPN4-212ENST00000488896 TMEM151AQ8N4L1 468 aa9.57□□□□□ -0.88
PTPN4-212ENST00000488896 PNMA5Q96PV4 448 aa9.57□□□□□ -0.88
PTPN4-212ENST00000488896 SIN3BO75182 1162 aa9.56□□□□□ -0.88
PTPN4-212ENST00000488896 EPB42P16452 691 aa9.56□□□□□ -0.88
PTPN4-212ENST00000488896 ALAS2P22557 587 aa9.56□□□□□ -0.88
PTPN4-212ENST00000488896 INPP5BP32019 993 aa9.56□□□□□ -0.88
PTPN4-212ENST00000488896 ARSDP51689 593 aa9.56□□□□□ -0.88
PTPN4-212ENST00000488896 KRT25Q7Z3Z0 450 aa9.56□□□□□ -0.88
PTPN4-212ENST00000488896 TREML1Q86YW5 311 aa9.56□□□□□ -0.88
PTPN4-212ENST00000488896 MKL2Q9ULH7 1088 aa9.56□□□□□ -0.88
PTPN4-212ENST00000488896 ELOA3CA0A087WX78 387 aaPredicted RBP9.55□□□□□ -0.88
PTPN4-212ENST00000488896 ELOA3DA6NLF2 546 aaPredicted RBP9.55□□□□□ -0.88
PTPN4-212ENST00000488896 GRNP28799 593 aaKnown RBP9.55□□□□□ -0.88
PTPN4-212ENST00000488896 SCNN1AP37088 669 aa9.55□□□□□ -0.88
PTPN4-212ENST00000488896 ELOA3BQ3SY89 546 aa9.55□□□□□ -0.88
PTPN4-212ENST00000488896 ELOA3Q8NG57 546 aa9.55□□□□□ -0.88
PTPN4-212ENST00000488896 GSX2Q9BZM3 304 aa9.55□□□□□ -0.88
PTPN4-212ENST00000488896 PTCD1O75127 700 aaKnown RBP9.54□□□□□ -0.88
PTPN4-212ENST00000488896 NFKB1P19838 968 aa9.54□□□□□ -0.88
PTPN4-212ENST00000488896 CCINQ13939 588 aa9.54□□□□□ -0.88
PTPN4-212ENST00000488896 KANK3Q6NY19 840 aa9.54□□□□□ -0.88
PTPN4-212ENST00000488896 RGL4Q8IZJ4 473 aa9.54□□□□□ -0.88
PTPN4-212ENST00000488896 UBE2OQ9C0C9 1292 aaKnown RBP9.54□□□□□ -0.88
PTPN4-212ENST00000488896 SEPT3Q9UH03 358 aa9.54□□□□□ -0.88
PTPN4-212ENST00000488896 OPLAHO14841 1288 aa9.53□□□□□ -0.88
PTPN4-212ENST00000488896 HOXB4P17483 251 aaPredicted RBP9.53□□□□□ -0.88
PTPN4-212ENST00000488896 ADH7P40394 386 aa9.53□□□□□ -0.88
PTPN4-212ENST00000488896 ETFBKMTQ8IXQ9 262 aa9.53□□□□□ -0.88
PTPN4-212ENST00000488896 CMTR1Q8N1G2 835 aaKnown RBP9.53□□□□□ -0.88
PTPN4-212ENST00000488896 KCTD17Q8N5Z5 321 aa9.53□□□□□ -0.88
PTPN4-212ENST00000488896 COL26A1Q96A83 441 aa9.53□□□□□ -0.88
PTPN4-212ENST00000488896 RTCBQ9Y3I0 505 aaKnown RBP9.53□□□□□ -0.88
PTPN4-212ENST00000488896 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.53□□□□□ -0.88
PTPN4-212ENST00000488896 TMEM88BA6NKF7 163 aa9.52□□□□□ -0.89
PTPN4-212ENST00000488896 BRD2P25440 801 aaKnown RBP9.52□□□□□ -0.89
PTPN4-212ENST00000488896 FAM26DQ5JW98 314 aa9.52□□□□□ -0.89
PTPN4-212ENST00000488896 LINC00114Q6XXX2 140 aa9.52□□□□□ -0.89
PTPN4-212ENST00000488896 ADARB2-AS1A8MUL3 147 aa9.51□□□□□ -0.89
PTPN4-212ENST00000488896 TNFRSF10BO14763 440 aa9.51□□□□□ -0.89
PTPN4-212ENST00000488896 SASH3O75995 380 aa9.51□□□□□ -0.89
PTPN4-212ENST00000488896 DGKGP49619 791 aa9.51□□□□□ -0.89
PTPN4-212ENST00000488896 TNFRSF25Q93038 417 aa9.51□□□□□ -0.89
PTPN4-212ENST00000488896 SUV39H2Q9H5I1 410 aa9.51□□□□□ -0.89
PTPN4-212ENST00000488896 TARSP26639 723 aaKnown RBP9.5□□□□□ -0.89
PTPN4-212ENST00000488896 GNB5O14775 395 aa9.49□□□□□ -0.89
PTPN4-212ENST00000488896 C8orf86Q6ZUL3 223 aa9.49□□□□□ -0.89
PTPN4-212ENST00000488896 MDFIQ99750 246 aa9.49□□□□□ -0.89
PTPN4-212ENST00000488896 M0R082 166 aa9.48□□□□□ -0.89
PTPN4-212ENST00000488896 XYLBO75191 536 aa9.48□□□□□ -0.89
PTPN4-212ENST00000488896 RARAP10276 462 aa9.48□□□□□ -0.89
PTPN4-212ENST00000488896 ZNF417Q8TAU3 575 aa9.48□□□□□ -0.89
PTPN4-212ENST00000488896 DCAF5Q96JK2 942 aa9.48□□□□□ -0.89
PTPN4-212ENST00000488896 ZNF587Q96SQ5 575 aaPredicted RBP9.48□□□□□ -0.89
PTPN4-212ENST00000488896 DNAJB12Q9NXW2 375 aaKnown RBP9.48□□□□□ -0.89
PTPN4-212ENST00000488896 ZFATQ9P243 1243 aa9.48□□□□□ -0.89
PTPN4-212ENST00000488896 STARD13Q9Y3M8 1113 aa9.48□□□□□ -0.89
PTPN4-212ENST00000488896 ZBTB39O15060 712 aa9.47□□□□□ -0.89
PTPN4-212ENST00000488896 ALBP02768 609 aa9.47□□□□□ -0.89
PTPN4-212ENST00000488896 SSFA2P28290 1259 aa9.47□□□□□ -0.89
PTPN4-212ENST00000488896 STIM2Q9P246 746 aa9.47□□□□□ -0.89
PTPN4-212ENST00000488896 SLC6A14Q9UN76 642 aa9.47□□□□□ -0.89
PTPN4-212ENST00000488896 PIK3R2O00459 728 aa9.46□□□□□ -0.9
PTPN4-212ENST00000488896 COL8A1P27658 744 aa9.46□□□□□ -0.9
PTPN4-212ENST00000488896 ZAP70P43403 619 aa9.46□□□□□ -0.9
PTPN4-212ENST00000488896 MLLT1Q03111 559 aaPredicted RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms