RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 EIF5P55010 431 aaKnown RBP15.01□□□□□ -0.01
HDAC6-230ENST00000488543 SALL3Q9BXA9 1300 aa15.01□□□□□ -0.01
HDAC6-230ENST00000488543 IL6STP40189 918 aaPredicted RBP15□□□□□ -0.01
HDAC6-230ENST00000488543 TTC22Q5TAA0 569 aa15□□□□□ -0.01
HDAC6-230ENST00000488543 SUCLG2Q96I99 432 aa15□□□□□ -0.01
HDAC6-230ENST00000488543 SRGAP3O43295 1099 aa15□□□□□ -0.01
HDAC6-230ENST00000488543 DZIP3Q86Y13 1208 aaKnown RBP15□□□□□ -0.01
HDAC6-230ENST00000488543 LRRC4BQ9NT99 713 aa15□□□□□ -0.01
HDAC6-230ENST00000488543 NHSQ6T4R5 1651 aa15□□□□□ -0.01
HDAC6-230ENST00000488543 KIF6Q6ZMV9 814 aa14.99□□□□□ -0.01
HDAC6-230ENST00000488543 LRRCC1Q9C099 1032 aa14.99□□□□□ -0.01
HDAC6-230ENST00000488543 AMIGO3Q86WK7 504 aa14.99□□□□□ -0.01
HDAC6-230ENST00000488543 MAP3K15Q6ZN16 1313 aa14.99□□□□□ -0.01
HDAC6-230ENST00000488543 A0A087WZG4 1122 aa14.98□□□□□ -0.01
HDAC6-230ENST00000488543 GPTP24298 496 aa14.98□□□□□ -0.01
HDAC6-230ENST00000488543 UBE3BQ7Z3V4 1068 aa14.98□□□□□ -0.01
HDAC6-230ENST00000488543 TCIRG1Q13488 830 aa14.98□□□□□ -0.01
HDAC6-230ENST00000488543 TBC1D32Q96NH3 1257 aa14.98□□□□□ -0.01
HDAC6-230ENST00000488543 OSBPL3Q9H4L5 887 aa14.98□□□□□ -0.01
HDAC6-230ENST00000488543 EPHA10Q5JZY3 1008 aa14.97□□□□□ -0.01
HDAC6-230ENST00000488543 GIGYF2Q6Y7W6 1299 aaKnown RBP14.97□□□□□ -0.01
HDAC6-230ENST00000488543 HDAC5Q9UQL6 1122 aa14.97□□□□□ -0.01
HDAC6-230ENST00000488543 RAB11FIP3O75154 756 aa14.97□□□□□ -0.01
HDAC6-230ENST00000488543 SURF6O75683 361 aaKnown RBP14.97□□□□□ -0.01
HDAC6-230ENST00000488543 BICC1Q9H694 974 aaKnown RBP14.97□□□□□ -0.01
HDAC6-230ENST00000488543 PDE1AP54750 535 aa14.96□□□□□ -0.01
HDAC6-230ENST00000488543 PROM2Q8N271 834 aa14.96□□□□□ -0.01
HDAC6-230ENST00000488543 COL15A1P39059 1388 aa14.96□□□□□ -0.02
HDAC6-230ENST00000488543 MFAP1P55081 439 aaKnown RBP14.95□□□□□ -0.02
HDAC6-230ENST00000488543 TBC1D9Q6ZT07 1266 aa14.95□□□□□ -0.02
HDAC6-230ENST00000488543 SYNE4Q8N205 404 aa14.95□□□□□ -0.02
HDAC6-230ENST00000488543 ISCA1Q9BUE6 129 aa14.95□□□□□ -0.02
HDAC6-230ENST00000488543 CICQ96RK0 1608 aaPredicted RBP14.95□□□□□ -0.02
HDAC6-230ENST00000488543 ZBTB22O15209 634 aa14.95□□□□□ -0.02
HDAC6-230ENST00000488543 CASP7P55210 303 aa14.95□□□□□ -0.02
HDAC6-230ENST00000488543 TBC1D2Q9BYX2 928 aa14.95□□□□□ -0.02
HDAC6-230ENST00000488543 ANO8Q9HCE9 1232 aaPredicted RBP14.95□□□□□ -0.02
HDAC6-230ENST00000488543 CWC25Q9NXE8 425 aaPredicted RBP14.95□□□□□ -0.02
HDAC6-230ENST00000488543 GNPATO15228 680 aa14.94□□□□□ -0.02
HDAC6-230ENST00000488543 RHPN1Q8TCX5 695 aa14.94□□□□□ -0.02
HDAC6-230ENST00000488543 CDC45O75419 566 aa14.94□□□□□ -0.02
HDAC6-230ENST00000488543 CAMTA2O94983 1202 aa14.94□□□□□ -0.02
HDAC6-230ENST00000488543 CCDC191Q8NCU4 936 aa14.94□□□□□ -0.02
HDAC6-230ENST00000488543 FAM89AQ96GI7 184 aa14.94□□□□□ -0.02
HDAC6-230ENST00000488543 UPF2Q9HAU5 1272 aaKnown RBP14.94□□□□□ -0.02
HDAC6-230ENST00000488543 STAP2Q9UGK3 403 aa14.94□□□□□ -0.02
HDAC6-230ENST00000488543 H7C1W4 665 aa14.93□□□□□ -0.02
HDAC6-230ENST00000488543 APBA3O96018 575 aa14.93□□□□□ -0.02
HDAC6-230ENST00000488543 SDSP20132 328 aa14.93□□□□□ -0.02
HDAC6-230ENST00000488543 IL1RAPL2Q9NP60 686 aa14.93□□□□□ -0.02
HDAC6-230ENST00000488543 RREB1Q92766 1687 aa14.93□□□□□ -0.02
HDAC6-230ENST00000488543 KIF1BPQ96EK5 621 aa14.93□□□□□ -0.02
HDAC6-230ENST00000488543 PA2G4Q9UQ80 394 aaKnown RBP14.93□□□□□ -0.02
HDAC6-230ENST00000488543 CNTNAP4Q9C0A0 1308 aa14.93□□□□□ -0.02
HDAC6-230ENST00000488543 FAM177BA6PVY3 158 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 ERVV-1B6SEH8 477 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 MX1P20591 662 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 TSHZ3Q63HK5 1081 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 COL5A3P25940 1745 aaPredicted RBP14.92□□□□□ -0.02
HDAC6-230ENST00000488543 PHF14O94880 888 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 BECN1Q14457 450 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 HSP90AB4PQ58FF6 505 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 ILDR1Q86SU0 546 aaPredicted RBP14.92□□□□□ -0.02
HDAC6-230ENST00000488543 NLRP10Q86W26 655 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 KLHDC4Q8TBB5 520 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 ANKRD36CQ5JPF3 1778 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 UBN2Q6ZU65 1347 aa14.92□□□□□ -0.02
HDAC6-230ENST00000488543 RPS6KA4O75676 772 aa14.91□□□□□ -0.02
HDAC6-230ENST00000488543 TRIM28Q13263 835 aaKnown RBP14.91□□□□□ -0.02
HDAC6-230ENST00000488543 TXNRD1Q16881 649 aa14.91□□□□□ -0.02
HDAC6-230ENST00000488543 RC3H1Q5TC82 1133 aaKnown RBP14.91□□□□□ -0.02
HDAC6-230ENST00000488543 C22orf23Q9BZE7 217 aa14.91□□□□□ -0.02
HDAC6-230ENST00000488543 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.91□□□□□ -0.02
HDAC6-230ENST00000488543 SRP68Q9UHB9 627 aaKnown RBP14.91□□□□□ -0.02
HDAC6-230ENST00000488543 RABL6Q3YEC7 729 aaPredicted RBP14.91□□□□□ -0.02
HDAC6-230ENST00000488543 AOX1Q06278 1338 aa14.91□□□□□ -0.02
HDAC6-230ENST00000488543 NUTM1Q86Y26 1132 aa14.9□□□□□ -0.02
HDAC6-230ENST00000488543 ZNF34Q8IZ26 560 aa14.9□□□□□ -0.02
HDAC6-230ENST00000488543 ARHGEF1Q92888 912 aaKnown RBP14.9□□□□□ -0.02
HDAC6-230ENST00000488543 ANTXR1Q9H6X2 564 aa14.9□□□□□ -0.02
HDAC6-230ENST00000488543 LY75O60449 1722 aa14.9□□□□□ -0.02
HDAC6-230ENST00000488543 RFX5P48382 616 aaPredicted RBP14.9□□□□□ -0.02
HDAC6-230ENST00000488543 FOXO4P98177 505 aa14.9□□□□□ -0.02
HDAC6-230ENST00000488543 RTCBQ9Y3I0 505 aaKnown RBP14.9□□□□□ -0.02
HDAC6-230ENST00000488543 ZNF831Q5JPB2 1677 aa14.89□□□□□ -0.03
HDAC6-230ENST00000488543 USPL1Q5W0Q7 1092 aa14.89□□□□□ -0.03
HDAC6-230ENST00000488543 LMBR1LQ6UX01 489 aa14.89□□□□□ -0.03
HDAC6-230ENST00000488543 NUP98P52948 1817 aa14.89□□□□□ -0.03
HDAC6-230ENST00000488543 SUSD4Q5VX71 490 aa14.89□□□□□ -0.03
HDAC6-230ENST00000488543 BICDL1Q6ZP65 573 aa14.89□□□□□ -0.03
HDAC6-230ENST00000488543 AK7Q96M32 723 aa14.89□□□□□ -0.03
HDAC6-230ENST00000488543 CCDC85AQ96PX6 553 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-230ENST00000488543 BCL2L12Q9HB09 334 aa14.89□□□□□ -0.03
HDAC6-230ENST00000488543 TRMT112Q9UI30 125 aaKnown RBP14.89□□□□□ -0.03
HDAC6-230ENST00000488543 AK9Q5TCS8 1911 aa14.88□□□□□ -0.03
HDAC6-230ENST00000488543 TMEM132AQ24JP5 1023 aa14.88□□□□□ -0.03
HDAC6-230ENST00000488543 HSP90AB3PQ58FF7 597 aa14.88□□□□□ -0.03
HDAC6-230ENST00000488543 ZBTB38Q8NAP3 1195 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-230ENST00000488543 NIP7Q9Y221 180 aaKnown RBP eCLIP14.88□□□□□ -0.03
HDAC6-230ENST00000488543 USP42Q9H9J4 1324 aaKnown RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms