RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 NIM1KQ8IY84 436 aa12.5□□□□□ -0.41
COL17A1-207ENST00000488320 GAS2L2Q8NHY3 880 aa12.5□□□□□ -0.41
COL17A1-207ENST00000488320 LTBP1Q14766 1721 aa12.5□□□□□ -0.41
COL17A1-207ENST00000488320 BCORQ6W2J9 1755 aa12.5□□□□□ -0.41
COL17A1-207ENST00000488320 PDE4DIPQ5VU43 2346 aa12.5□□□□□ -0.41
COL17A1-207ENST00000488320 KCNQ3O43525 872 aa12.49□□□□□ -0.41
COL17A1-207ENST00000488320 GRIPAP1Q4V328 841 aa12.49□□□□□ -0.41
COL17A1-207ENST00000488320 RPGRQ92834 1020 aaKnown RBP12.49□□□□□ -0.41
COL17A1-207ENST00000488320 HHIPL1Q96JK4 782 aa12.49□□□□□ -0.41
COL17A1-207ENST00000488320 GLIS2Q9BZE0 524 aaPredicted RBP12.49□□□□□ -0.41
COL17A1-207ENST00000488320 TMX4Q9H1E5 349 aaPredicted RBP12.49□□□□□ -0.41
COL17A1-207ENST00000488320 U2SURPO15042 1029 aaKnown RBP12.48□□□□□ -0.41
COL17A1-207ENST00000488320 GPRC5DQ9NZD1 345 aa12.48□□□□□ -0.41
COL17A1-207ENST00000488320 PPIP5K2O43314 1243 aa12.47□□□□□ -0.41
COL17A1-207ENST00000488320 NOGQ13253 232 aa12.47□□□□□ -0.41
COL17A1-207ENST00000488320 HLFQ16534 295 aa12.47□□□□□ -0.41
COL17A1-207ENST00000488320 PRPF38BQ5VTL8 546 aaKnown RBP12.47□□□□□ -0.41
COL17A1-207ENST00000488320 NUTM1Q86Y26 1132 aa12.47□□□□□ -0.41
COL17A1-207ENST00000488320 RBM17Q96I25 401 aaKnown RBP12.47□□□□□ -0.41
COL17A1-207ENST00000488320 BCL2L13Q9BXK5 485 aa12.47□□□□□ -0.41
COL17A1-207ENST00000488320 NYXQ9GZU5 481 aa12.47□□□□□ -0.41
COL17A1-207ENST00000488320 PRAMEF22A3QJZ6 481 aa12.46□□□□□ -0.41
COL17A1-207ENST00000488320 SNRPA1P09661 255 aaKnown RBP12.46□□□□□ -0.41
COL17A1-207ENST00000488320 EIF4G2P78344 907 aaKnown RBP eCLIP12.46□□□□□ -0.41
COL17A1-207ENST00000488320 CDC37L1Q7L3B6 337 aa12.46□□□□□ -0.41
COL17A1-207ENST00000488320 ZIC5Q96T25 663 aa12.46□□□□□ -0.41
COL17A1-207ENST00000488320 PPEF1O14829 653 aaPredicted RBP12.45□□□□□ -0.42
COL17A1-207ENST00000488320 HUNKP57058 714 aa12.45□□□□□ -0.42
COL17A1-207ENST00000488320 AOC3Q16853 763 aa12.45□□□□□ -0.42
COL17A1-207ENST00000488320 NGEFQ8N5V2 710 aa12.45□□□□□ -0.42
COL17A1-207ENST00000488320 SIPA1L3O60292 1781 aaPredicted RBP12.45□□□□□ -0.42
COL17A1-207ENST00000488320 COL4A5P29400 1685 aa12.45□□□□□ -0.42
COL17A1-207ENST00000488320 GMPSP49915 693 aaPredicted RBP12.44□□□□□ -0.42
COL17A1-207ENST00000488320 CXCL9Q07325 125 aa12.44□□□□□ -0.42
COL17A1-207ENST00000488320 CRY2Q49AN0 593 aa12.44□□□□□ -0.42
COL17A1-207ENST00000488320 USP48Q86UV5 1035 aa12.44□□□□□ -0.42
COL17A1-207ENST00000488320 ZNRF3Q9ULT6 936 aa12.44□□□□□ -0.42
COL17A1-207ENST00000488320 NPC1L1Q9UHC9 1359 aa12.43□□□□□ -0.42
COL17A1-207ENST00000488320 NBPF26B4DH59 902 aa12.43□□□□□ -0.42
COL17A1-207ENST00000488320 RGL2O15211 777 aa12.43□□□□□ -0.42
COL17A1-207ENST00000488320 TRPA1O75762 1119 aa12.43□□□□□ -0.42
COL17A1-207ENST00000488320 HSPA5P11021 654 aaKnown RBP12.43□□□□□ -0.42
COL17A1-207ENST00000488320 HOXA10P31260 410 aaPredicted RBP12.43□□□□□ -0.42
COL17A1-207ENST00000488320 NBPF10Q6P3W6 841 aaKnown RBP12.43□□□□□ -0.42
COL17A1-207ENST00000488320 NBPF15Q8N660 670 aa12.43□□□□□ -0.42
COL17A1-207ENST00000488320 ZC3H15Q8WU90 426 aaKnown RBP12.43□□□□□ -0.42
COL17A1-207ENST00000488320 RTF1Q92541 710 aaKnown RBP12.43□□□□□ -0.42
COL17A1-207ENST00000488320 VPS33BQ9H267 617 aa12.43□□□□□ -0.42
COL17A1-207ENST00000488320 PGAP2Q9UHJ9 254 aa12.43□□□□□ -0.42
COL17A1-207ENST00000488320 H7C1D1 291 aa12.42□□□□□ -0.42
COL17A1-207ENST00000488320 KIF23Q02241 960 aaPredicted RBP12.42□□□□□ -0.42
COL17A1-207ENST00000488320 CNGB1Q14028 1251 aaPredicted RBP12.42□□□□□ -0.42
COL17A1-207ENST00000488320 TNIP1Q15025 636 aa12.42□□□□□ -0.42
COL17A1-207ENST00000488320 AMER1Q5JTC6 1135 aaPredicted RBP12.42□□□□□ -0.42
COL17A1-207ENST00000488320 RGMBQ6NW40 437 aa12.42□□□□□ -0.42
COL17A1-207ENST00000488320 SUPT20HQ8NEM7 779 aa12.42□□□□□ -0.42
COL17A1-207ENST00000488320 CRAMP1Q96RY5 1269 aa12.42□□□□□ -0.42
COL17A1-207ENST00000488320 SAGE1Q9NXZ1 904 aa12.42□□□□□ -0.42
COL17A1-207ENST00000488320 CNOT7Q9UIV1 285 aaKnown RBP12.42□□□□□ -0.42
COL17A1-207ENST00000488320 TIMELESSQ9UNS1 1208 aa12.42□□□□□ -0.42
COL17A1-207ENST00000488320 SNED1Q8TER0 1413 aa12.42□□□□□ -0.42
COL17A1-207ENST00000488320 RAD17O75943 681 aa12.41□□□□□ -0.42
COL17A1-207ENST00000488320 GPTP24298 496 aa12.41□□□□□ -0.42
COL17A1-207ENST00000488320 ZNF157P51786 506 aaPredicted RBP12.41□□□□□ -0.42
COL17A1-207ENST00000488320 HIRAP54198 1017 aaPredicted RBP12.41□□□□□ -0.42
COL17A1-207ENST00000488320 CC2D1BQ5T0F9 858 aaKnown RBP12.41□□□□□ -0.42
COL17A1-207ENST00000488320 C2orf69Q8N8R5 385 aa12.41□□□□□ -0.42
COL17A1-207ENST00000488320 CCDC102AQ96A19 550 aa12.41□□□□□ -0.42
COL17A1-207ENST00000488320 RNF186Q9NXI6 227 aa12.41□□□□□ -0.42
COL17A1-207ENST00000488320 ABCC12Q96J65 1359 aa12.41□□□□□ -0.42
COL17A1-207ENST00000488320 AKAP11Q9UKA4 1901 aa12.41□□□□□ -0.42
COL17A1-207ENST00000488320 KIF6Q6ZMV9 814 aa12.4□□□□□ -0.42
COL17A1-207ENST00000488320 CTU1Q7Z7A3 348 aaKnown RBP12.4□□□□□ -0.42
COL17A1-207ENST00000488320 SLC51AQ86UW1 340 aa12.4□□□□□ -0.42
COL17A1-207ENST00000488320 TRPM4Q8TD43 1214 aa12.4□□□□□ -0.42
COL17A1-207ENST00000488320 NLRP3Q96P20 1036 aa12.4□□□□□ -0.42
COL17A1-207ENST00000488320 CEMIPQ8WUJ3 1361 aa12.4□□□□□ -0.42
COL17A1-207ENST00000488320 KIF7Q2M1P5 1343 aa12.39□□□□□ -0.43
COL17A1-207ENST00000488320 ERVV-1B6SEH8 477 aa12.39□□□□□ -0.43
COL17A1-207ENST00000488320 MAPK8IP2Q13387 824 aaPredicted RBP12.39□□□□□ -0.43
COL17A1-207ENST00000488320 DLK2Q6UY11 383 aa12.39□□□□□ -0.43
COL17A1-207ENST00000488320 DPP8Q6V1X1 898 aaPredicted RBP12.39□□□□□ -0.43
COL17A1-207ENST00000488320 GCC1Q96CN9 775 aa12.39□□□□□ -0.43
COL17A1-207ENST00000488320 PHACTR3Q96KR7 559 aa12.39□□□□□ -0.43
COL17A1-207ENST00000488320 GBA2Q9HCG7 927 aaPredicted RBP12.39□□□□□ -0.43
COL17A1-207ENST00000488320 ATP6V0A2Q9Y487 856 aa12.39□□□□□ -0.43
COL17A1-207ENST00000488320 FAM155AB1AL88 458 aaPredicted RBP12.38□□□□□ -0.43
COL17A1-207ENST00000488320 SUSD4Q5VX71 490 aa12.38□□□□□ -0.43
COL17A1-207ENST00000488320 MCM10Q7L590 875 aa12.38□□□□□ -0.43
COL17A1-207ENST00000488320 PPP1R42Q7Z4L9 355 aa12.38□□□□□ -0.43
COL17A1-207ENST00000488320 HDAC9Q9UKV0 1011 aa12.38□□□□□ -0.43
COL17A1-207ENST00000488320 RRP7AQ9Y3A4 280 aaKnown RBP12.38□□□□□ -0.43
COL17A1-207ENST00000488320 NUP98P52948 1817 aa12.38□□□□□ -0.43
COL17A1-207ENST00000488320 MAP3K15Q6ZN16 1313 aa12.37□□□□□ -0.43
COL17A1-207ENST00000488320 CDHR2Q9BYE9 1310 aa12.37□□□□□ -0.43
COL17A1-207ENST00000488320 PRKAR2BP31323 418 aa12.37□□□□□ -0.43
COL17A1-207ENST00000488320 KRT26Q7Z3Y9 468 aa12.37□□□□□ -0.43
COL17A1-207ENST00000488320 MICALL2Q8IY33 904 aa12.37□□□□□ -0.43
COL17A1-207ENST00000488320 MPNDQ8N594 471 aa12.37□□□□□ -0.43
COL17A1-207ENST00000488320 DCPSQ96C86 337 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms