RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 LARP1Q6PKG0 1096 aaKnown RBP21.52■■□□□ 1.04
VIM-206ENST00000487938 COPS6Q7L5N1 327 aa21.52■■□□□ 1.04
VIM-206ENST00000487938 TMEM87AQ8NBN3 555 aa21.52■■□□□ 1.04
VIM-206ENST00000487938 RAPGEF4Q8WZA2 1011 aa21.52■■□□□ 1.04
VIM-206ENST00000487938 KCNB2Q92953 911 aa21.52■■□□□ 1.04
VIM-206ENST00000487938 ERBB3P21860 1342 aa21.52■■□□□ 1.04
VIM-206ENST00000487938 ZKSCAN1P17029 563 aaPredicted RBP21.52■■□□□ 1.03
VIM-206ENST00000487938 TM6SF1Q9BZW5 370 aa21.52■■□□□ 1.03
VIM-206ENST00000487938 C1orf167Q5SNV9 1468 aa21.51■■□□□ 1.03
VIM-206ENST00000487938 NEURL1BA8MQ27 555 aa21.51■■□□□ 1.03
VIM-206ENST00000487938 PHF14O94880 888 aa21.51■■□□□ 1.03
VIM-206ENST00000487938 MAP4K1Q92918 833 aa21.51■■□□□ 1.03
VIM-206ENST00000487938 SLC52A2Q9HAB3 445 aa21.51■■□□□ 1.03
VIM-206ENST00000487938 RGPD5Q99666 1765 aa21.51■■□□□ 1.03
VIM-206ENST00000487938 A0A0D9SFI3 127 aa21.5■■□□□ 1.03
VIM-206ENST00000487938 OFD1O75665 1012 aa21.5■■□□□ 1.03
VIM-206ENST00000487938 NEXNQ0ZGT2 675 aa21.5■■□□□ 1.03
VIM-206ENST00000487938 ST3GAL1Q11201 340 aa21.5■■□□□ 1.03
VIM-206ENST00000487938 FSD1Q9BTV5 496 aa21.5■■□□□ 1.03
VIM-206ENST00000487938 GCKRQ14397 625 aa21.5■■□□□ 1.03
VIM-206ENST00000487938 DDX17Q92841 729 aaKnown RBP21.5■■□□□ 1.03
VIM-206ENST00000487938 ZSCAN31Q96LW9 406 aaPredicted RBP21.5■■□□□ 1.03
VIM-206ENST00000487938 DNM1Q05193 864 aaKnown RBP21.49■■□□□ 1.03
VIM-206ENST00000487938 EDC3Q96F86 508 aaKnown RBP21.49■■□□□ 1.03
VIM-206ENST00000487938 TPCN1Q9ULQ1 816 aa21.49■■□□□ 1.03
VIM-206ENST00000487938 MTMR6Q9Y217 621 aa21.49■■□□□ 1.03
VIM-206ENST00000487938 SLC27A2O14975 620 aa21.49■■□□□ 1.03
VIM-206ENST00000487938 CCDC183Q5T5S1 534 aa21.49■■□□□ 1.03
VIM-206ENST00000487938 ZNF496Q96IT1 587 aaPredicted RBP21.49■■□□□ 1.03
VIM-206ENST00000487938 TCEANC2Q96MN5 208 aa21.49■■□□□ 1.03
VIM-206ENST00000487938 USP16Q9Y5T5 823 aa21.49■■□□□ 1.03
VIM-206ENST00000487938 SIPA1L3O60292 1781 aaPredicted RBP21.49■■□□□ 1.03
VIM-206ENST00000487938 VPS37CA5D8V6 355 aaPredicted RBP21.48■■□□□ 1.03
VIM-206ENST00000487938 HIP1O00291 1037 aa21.48■■□□□ 1.03
VIM-206ENST00000487938 UBE2HP62256 183 aa21.48■■□□□ 1.03
VIM-206ENST00000487938 SH2B1Q9NRF2 756 aaPredicted RBP21.48■■□□□ 1.03
VIM-206ENST00000487938 ZKSCAN5Q9Y2L8 839 aa21.48■■□□□ 1.03
VIM-206ENST00000487938 NPHP3Q7Z494 1330 aa21.48■■□□□ 1.03
VIM-206ENST00000487938 PHKG2P15735 406 aa21.48■■□□□ 1.03
VIM-206ENST00000487938 CCDC39Q9UFE4 941 aa21.48■■□□□ 1.03
VIM-206ENST00000487938 ATP6V1DQ9Y5K8 247 aa21.48■■□□□ 1.03
VIM-206ENST00000487938 TAF6LQ9Y6J9 622 aa21.48■■□□□ 1.03
VIM-206ENST00000487938 TRPM3Q9HCF6 1732 aaPredicted RBP21.47■■□□□ 1.03
VIM-206ENST00000487938 TATP17735 454 aaPredicted RBP21.47■■□□□ 1.03
VIM-206ENST00000487938 METTL22Q9BUU2 404 aaPredicted RBP21.47■■□□□ 1.03
VIM-206ENST00000487938 KIF1AQ12756 1690 aa21.47■■□□□ 1.03
VIM-206ENST00000487938 ZNF500O60304 480 aaPredicted RBP21.46■■□□□ 1.03
VIM-206ENST00000487938 ANKRD13DQ6ZTN6 518 aa21.46■■□□□ 1.03
VIM-206ENST00000487938 KDM6AO15550 1401 aaPredicted RBP21.46■■□□□ 1.03
VIM-206ENST00000487938 MPNDQ8N594 471 aa21.46■■□□□ 1.03
VIM-206ENST00000487938 PTMAP06454 111 aaKnown RBP21.45■■□□□ 1.02
VIM-206ENST00000487938 ZNF589Q86UQ0 364 aaPredicted RBP21.45■■□□□ 1.02
VIM-206ENST00000487938 NDUFB9Q9Y6M9 179 aa21.45■■□□□ 1.02
VIM-206ENST00000487938 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.45■■□□□ 1.02
VIM-206ENST00000487938 CABLES1Q8TDN4 633 aa21.45■■□□□ 1.02
VIM-206ENST00000487938 CSB-PGBD3P0DP91 1061 aa21.44■■□□□ 1.02
VIM-206ENST00000487938 ATF3P18847 181 aa21.44■■□□□ 1.02
VIM-206ENST00000487938 PSMA5P28066 241 aa21.44■■□□□ 1.02
VIM-206ENST00000487938 MST1RQ04912 1400 aa21.44■■□□□ 1.02
VIM-206ENST00000487938 LARP1BQ659C4 914 aaKnown RBP21.44■■□□□ 1.02
VIM-206ENST00000487938 R3HCC1Q9Y3T6 440 aaKnown RBP21.44■■□□□ 1.02
VIM-206ENST00000487938 CAMTA1Q9Y6Y1 1673 aa21.44■■□□□ 1.02
VIM-206ENST00000487938 ATP5J2-PTCD1G3V325 749 aa21.43■■□□□ 1.02
VIM-206ENST00000487938 PTCD1O75127 700 aaKnown RBP21.43■■□□□ 1.02
VIM-206ENST00000487938 HCLS1P14317 486 aaPredicted RBP21.43■■□□□ 1.02
VIM-206ENST00000487938 TFCP2Q12800 502 aa21.43■■□□□ 1.02
VIM-206ENST00000487938 BLOC1S2Q6QNY1 142 aa21.43■■□□□ 1.02
VIM-206ENST00000487938 C5P01031 1676 aa21.43■■□□□ 1.02
VIM-206ENST00000487938 GIMAP6Q6P9H5 292 aa21.43■■□□□ 1.02
VIM-206ENST00000487938 IFNL2Q8IZJ0 200 aa21.43■■□□□ 1.02
VIM-206ENST00000487938 SNRKQ9NRH2 765 aa21.43■■□□□ 1.02
VIM-206ENST00000487938 TPM2P07951 284 aa21.42■■□□□ 1.02
VIM-206ENST00000487938 CHRNA2Q15822 529 aa21.42■■□□□ 1.02
VIM-206ENST00000487938 RNF20Q5VTR2 975 aa21.42■■□□□ 1.02
VIM-206ENST00000487938 UBE3BQ7Z3V4 1068 aa21.42■■□□□ 1.02
VIM-206ENST00000487938 FERMT3Q86UX7 667 aa21.42■■□□□ 1.02
VIM-206ENST00000487938 TTC5Q8N0Z6 440 aa21.42■■□□□ 1.02
VIM-206ENST00000487938 USP25Q9UHP3 1055 aa21.42■■□□□ 1.02
VIM-206ENST00000487938 TMEM94Q12767 1356 aa21.42■■□□□ 1.02
VIM-206ENST00000487938 LETM1O95202 739 aaPredicted RBP21.41■■□□□ 1.02
VIM-206ENST00000487938 CHGBP05060 677 aa21.41■■□□□ 1.02
VIM-206ENST00000487938 SNRPA1P09661 255 aaKnown RBP21.41■■□□□ 1.02
VIM-206ENST00000487938 FAM173BQ6P4H8 233 aa21.41■■□□□ 1.02
VIM-206ENST00000487938 LRP10Q7Z4F1 713 aa21.41■■□□□ 1.02
VIM-206ENST00000487938 DBNLQ9UJU6 430 aaKnown RBP21.41■■□□□ 1.02
VIM-206ENST00000487938 PTPN12Q05209 780 aaKnown RBP21.41■■□□□ 1.02
VIM-206ENST00000487938 STK3Q13188 491 aa21.41■■□□□ 1.02
VIM-206ENST00000487938 ADAMTS7Q9UKP4 1686 aa21.41■■□□□ 1.02
VIM-206ENST00000487938 RPS6KB1P23443 525 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 RFX5P48382 616 aaPredicted RBP21.4■■□□□ 1.02
VIM-206ENST00000487938 FAM184AQ8NB25 1140 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 COPRSQ9NQ92 184 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 CCDC9Q9Y3X0 531 aaKnown RBP21.4■■□□□ 1.02
VIM-206ENST00000487938 MEGF6O75095 1541 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 CYP27B1O15528 508 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 MCM5P33992 734 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 TOB2Q14106 344 aaPredicted RBP21.4■■□□□ 1.02
VIM-206ENST00000487938 UVSSAQ2YD98 709 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 TNNI3KQ59H18 835 aa21.4■■□□□ 1.02
VIM-206ENST00000487938 CDC37L1Q7L3B6 337 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms