RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 KCNB2Q92953 911 aa31.42■■■□□ 2.62
HLA-C-208ENST00000487245 RBSNQ9H1K0 784 aa31.42■■■□□ 2.62
HLA-C-208ENST00000487245 TOM1L2Q6ZVM7 507 aa31.4■■■□□ 2.62
HLA-C-208ENST00000487245 RBM27Q9P2N5 1060 aaKnown RBP31.4■■■□□ 2.62
HLA-C-208ENST00000487245 PRIM1P49642 420 aaKnown RBP31.4■■■□□ 2.62
HLA-C-208ENST00000487245 NKX1-1Q15270 411 aaPredicted RBP31.39■■■□□ 2.62
HLA-C-208ENST00000487245 PDLIM2Q96JY6 352 aa31.39■■■□□ 2.62
HLA-C-208ENST00000487245 RABL6Q3YEC7 729 aaPredicted RBP31.38■■■□□ 2.61
HLA-C-208ENST00000487245 NOL8Q76FK4 1167 aaKnown RBP31.38■■■□□ 2.61
HLA-C-208ENST00000487245 SLAIN2Q9P270 581 aa31.38■■■□□ 2.61
HLA-C-208ENST00000487245 AFDNP55196 1824 aaKnown RBP31.38■■■□□ 2.61
HLA-C-208ENST00000487245 ARFGEF2Q9Y6D5 1785 aa31.38■■■□□ 2.61
HLA-C-208ENST00000487245 TMEM87AQ8NBN3 555 aa31.38■■■□□ 2.61
HLA-C-208ENST00000487245 GLI3P10071 1580 aa31.37■■■□□ 2.61
HLA-C-208ENST00000487245 RPAP1Q9BWH6 1393 aaPredicted RBP31.37■■■□□ 2.61
HLA-C-208ENST00000487245 EPHA10Q5JZY3 1008 aa31.37■■■□□ 2.61
HLA-C-208ENST00000487245 RASEFQ8IZ41 740 aa31.37■■■□□ 2.61
HLA-C-208ENST00000487245 CARD10Q9BWT7 1032 aa31.37■■■□□ 2.61
HLA-C-208ENST00000487245 TM6SF1Q9BZW5 370 aa31.37■■■□□ 2.61
HLA-C-208ENST00000487245 CCDC8Q9H0W5 538 aaPredicted RBP31.37■■■□□ 2.61
HLA-C-208ENST00000487245 LIMCH1Q9UPQ0 1083 aa31.37■■■□□ 2.61
HLA-C-208ENST00000487245 CHAMP1Q96JM3 812 aa31.36■■■□□ 2.61
HLA-C-208ENST00000487245 SNRKQ9NRH2 765 aa31.36■■■□□ 2.61
HLA-C-208ENST00000487245 NSFL1CQ9UNZ2 370 aaKnown RBP31.36■■■□□ 2.61
HLA-C-208ENST00000487245 COL5A2P05997 1499 aaPredicted RBP31.36■■■□□ 2.61
HLA-C-208ENST00000487245 FOXD4L5Q5VV16 416 aaPredicted RBP31.35■■■□□ 2.61
HLA-C-208ENST00000487245 FOXD4L4Q8WXT5 416 aaPredicted RBP31.35■■■□□ 2.61
HLA-C-208ENST00000487245 SIL1Q9H173 461 aa31.35■■■□□ 2.61
HLA-C-208ENST00000487245 ZSCAN30Q86W11 494 aa31.35■■■□□ 2.61
HLA-C-208ENST00000487245 SYAP1Q96A49 352 aaPredicted RBP31.35■■■□□ 2.61
HLA-C-208ENST00000487245 RFX5P48382 616 aaPredicted RBP31.34■■■□□ 2.61
HLA-C-208ENST00000487245 AK2P54819 239 aa31.34■■■□□ 2.61
HLA-C-208ENST00000487245 IL2RBP14784 551 aa31.33■■■□□ 2.61
HLA-C-208ENST00000487245 ZSCAN21Q9Y5A6 473 aaPredicted RBP31.33■■■□□ 2.61
HLA-C-208ENST00000487245 A0A087WZG4 1122 aa31.33■■■□□ 2.61
HLA-C-208ENST00000487245 RUFY3Q7L099 469 aa31.33■■■□□ 2.61
HLA-C-208ENST00000487245 UBE3BQ7Z3V4 1068 aa31.32■■■□□ 2.6
HLA-C-208ENST00000487245 UBR2Q8IWV8 1755 aa31.32■■■□□ 2.6
HLA-C-208ENST00000487245 CCDC171Q6TFL3 1326 aa31.32■■■□□ 2.6
HLA-C-208ENST00000487245 PTPN12Q05209 780 aaKnown RBP31.31■■■□□ 2.6
HLA-C-208ENST00000487245 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP31.31■■■□□ 2.6
HLA-C-208ENST00000487245 PIP4K2AP48426 406 aaPredicted RBP31.31■■■□□ 2.6
HLA-C-208ENST00000487245 CASP7P55210 303 aa31.31■■■□□ 2.6
HLA-C-208ENST00000487245 PTH1RQ03431 593 aa31.31■■■□□ 2.6
HLA-C-208ENST00000487245 VPS53Q5VIR6 699 aa31.31■■■□□ 2.6
HLA-C-208ENST00000487245 SYCE3A1L190 88 aa31.3■■■□□ 2.6
HLA-C-208ENST00000487245 ZSCAN31Q96LW9 406 aaPredicted RBP31.3■■■□□ 2.6
HLA-C-208ENST00000487245 STRCQ7RTU9 1775 aa31.3■■■□□ 2.6
HLA-C-208ENST00000487245 ZKSCAN1P17029 563 aaPredicted RBP31.29■■■□□ 2.6
HLA-C-208ENST00000487245 KLHDC4Q8TBB5 520 aa31.29■■■□□ 2.6
HLA-C-208ENST00000487245 ZSWIM6Q9HCJ5 1215 aa31.29■■■□□ 2.6
HLA-C-208ENST00000487245 ATP5JP18859 108 aa31.29■■■□□ 2.6
HLA-C-208ENST00000487245 NECTIN1Q15223 517 aa31.29■■■□□ 2.6
HLA-C-208ENST00000487245 BOLA2Q9H3K6 86 aa31.29■■■□□ 2.6
HLA-C-208ENST00000487245 TLR7Q9NYK1 1049 aaKnown RBP31.29■■■□□ 2.6
HLA-C-208ENST00000487245 PAPPAQ13219 1627 aa31.28■■■□□ 2.6
HLA-C-208ENST00000487245 NBPF26B4DH59 902 aa31.28■■■□□ 2.6
HLA-C-208ENST00000487245 ATP5J2-PTCD1G3V325 749 aa31.28■■■□□ 2.6
HLA-C-208ENST00000487245 H7C1W4 665 aa31.28■■■□□ 2.6
HLA-C-208ENST00000487245 PTCD1O75127 700 aaKnown RBP31.28■■■□□ 2.6
HLA-C-208ENST00000487245 ZSCAN22P10073 491 aaPredicted RBP31.28■■■□□ 2.6
HLA-C-208ENST00000487245 NMIQ13287 307 aaPredicted RBP31.28■■■□□ 2.6
HLA-C-208ENST00000487245 NBPF14Q5TI25 921 aa31.28■■■□□ 2.6
HLA-C-208ENST00000487245 NBPF10Q6P3W6 841 aaKnown RBP31.28■■■□□ 2.6
HLA-C-208ENST00000487245 KLHL34Q8N239 644 aa31.28■■■□□ 2.6
HLA-C-208ENST00000487245 NBPF15Q8N660 670 aa31.28■■■□□ 2.6
HLA-C-208ENST00000487245 MAP4K1Q92918 833 aa31.28■■■□□ 2.6
HLA-C-208ENST00000487245 FSD1Q9BTV5 496 aa31.28■■■□□ 2.6
HLA-C-208ENST00000487245 PHF14O94880 888 aa31.27■■■□□ 2.6
HLA-C-208ENST00000487245 CASTP20810 708 aaKnown RBP31.27■■■□□ 2.6
HLA-C-208ENST00000487245 PRPF40BQ6NWY9 871 aaKnown RBP31.27■■■□□ 2.6
HLA-C-208ENST00000487245 CYP46A1Q9Y6A2 500 aa31.27■■■□□ 2.6
HLA-C-208ENST00000487245 TNNI3KQ59H18 835 aa31.27■■■□□ 2.6
HLA-C-208ENST00000487245 SH2B1Q9NRF2 756 aaPredicted RBP31.27■■■□□ 2.6
HLA-C-208ENST00000487245 FPGT-TNNI3KV9GXZ4 949 aa31.27■■■□□ 2.6
HLA-C-208ENST00000487245 KCPQ6ZWJ8 1503 aa31.26■■■□□ 2.6
HLA-C-208ENST00000487245 ABCA3Q99758 1704 aa31.26■■■□□ 2.6
HLA-C-208ENST00000487245 USP48Q86UV5 1035 aa31.26■■■□□ 2.59
HLA-C-208ENST00000487245 PDRG1Q9NUG6 133 aa31.25■■■□□ 2.59
HLA-C-208ENST00000487245 CWC25Q9NXE8 425 aaPredicted RBP31.25■■■□□ 2.59
HLA-C-208ENST00000487245 RBM8AQ9Y5S9 174 aaKnown RBP31.25■■■□□ 2.59
HLA-C-208ENST00000487245 RFX7Q2KHR2 1363 aa31.25■■■□□ 2.59
HLA-C-208ENST00000487245 JAKMIP1Q96N16 626 aaKnown RBP31.25■■■□□ 2.59
HLA-C-208ENST00000487245 NAP1L5Q96NT1 182 aaPredicted RBP31.25■■■□□ 2.59
HLA-C-208ENST00000487245 TCHHQ07283 1943 aa31.24■■■□□ 2.59
HLA-C-208ENST00000487245 STX6O43752 255 aa31.24■■■□□ 2.59
HLA-C-208ENST00000487245 PSMA5P28066 241 aa31.24■■■□□ 2.59
HLA-C-208ENST00000487245 KCNJ4P48050 445 aa31.24■■■□□ 2.59
HLA-C-208ENST00000487245 EVA1CP58658 441 aa31.24■■■□□ 2.59
HLA-C-208ENST00000487245 TFCP2Q12800 502 aa31.24■■■□□ 2.59
HLA-C-208ENST00000487245 RNF20Q5VTR2 975 aa31.24■■■□□ 2.59
HLA-C-208ENST00000487245 FAM227BQ96M60 508 aa31.24■■■□□ 2.59
HLA-C-208ENST00000487245 SMC3Q9UQE7 1217 aa31.24■■■□□ 2.59
HLA-C-208ENST00000487245 JARID2Q92833 1246 aaPredicted RBP31.23■■■□□ 2.59
HLA-C-208ENST00000487245 TSPY26PQ9H489 355 aa31.23■■■□□ 2.59
HLA-C-208ENST00000487245 ATP6V1DQ9Y5K8 247 aa31.23■■■□□ 2.59
HLA-C-208ENST00000487245 TNS2Q63HR2 1409 aa31.23■■■□□ 2.59
HLA-C-208ENST00000487245 CREB3L3Q68CJ9 461 aa31.23■■■□□ 2.59
HLA-C-208ENST00000487245 SYT1P21579 422 aa31.22■■■□□ 2.59
HLA-C-208ENST00000487245 CCDC191Q8NCU4 936 aa31.22■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms