RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 METAP2P50579 478 aaKnown RBP eCLIP18.98■□□□□ 0.63
COL7A1-210ENST00000487017 KANK3Q6NY19 840 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 CWC25Q9NXE8 425 aaPredicted RBP18.97■□□□□ 0.63
COL7A1-210ENST00000487017 RAPGEF6Q8TEU7 1601 aa18.97■□□□□ 0.63
COL7A1-210ENST00000487017 PAFAH1B1P43034 410 aa18.97■□□□□ 0.63
COL7A1-210ENST00000487017 ATP8B2P98198 1209 aa18.97■□□□□ 0.63
COL7A1-210ENST00000487017 NOLC1Q14978 699 aaKnown RBP eCLIP18.97■□□□□ 0.63
COL7A1-210ENST00000487017 TMEM266Q2M3C6 531 aa18.97■□□□□ 0.63
COL7A1-210ENST00000487017 VPS36Q86VN1 386 aa18.97■□□□□ 0.63
COL7A1-210ENST00000487017 C8orf58Q8NAV2 365 aa18.97■□□□□ 0.63
COL7A1-210ENST00000487017 UBE3BQ7Z3V4 1068 aa18.97■□□□□ 0.63
COL7A1-210ENST00000487017 DZIP1Q86YF9 867 aaKnown RBP18.97■□□□□ 0.63
COL7A1-210ENST00000487017 FAM200AQ8TCP9 573 aa18.97■□□□□ 0.63
COL7A1-210ENST00000487017 DUOX2Q9NRD8 1548 aa18.97■□□□□ 0.63
COL7A1-210ENST00000487017 SSR1P43307 286 aaKnown RBP18.96■□□□□ 0.63
COL7A1-210ENST00000487017 HAND2P61296 217 aa18.96■□□□□ 0.63
COL7A1-210ENST00000487017 BRF1Q92994 677 aa18.96■□□□□ 0.63
COL7A1-210ENST00000487017 ZBTB3Q9H5J0 574 aa18.96■□□□□ 0.63
COL7A1-210ENST00000487017 MPHOSPH10O00566 681 aaKnown RBP18.96■□□□□ 0.63
COL7A1-210ENST00000487017 LUZP1Q86V48 1076 aa18.96■□□□□ 0.63
COL7A1-210ENST00000487017 PIK3C2GO75747 1445 aa18.96■□□□□ 0.63
COL7A1-210ENST00000487017 FBLN1P23142 703 aa18.96■□□□□ 0.63
COL7A1-210ENST00000487017 ANO6Q4KMQ2 910 aa18.96■□□□□ 0.63
COL7A1-210ENST00000487017 F13A1P00488 732 aa18.96■□□□□ 0.63
COL7A1-210ENST00000487017 ZNF830Q96NB3 372 aaPredicted RBP18.96■□□□□ 0.63
COL7A1-210ENST00000487017 TNNQ9UQP3 1299 aa18.96■□□□□ 0.63
COL7A1-210ENST00000487017 GBP2P32456 591 aaPredicted RBP18.96■□□□□ 0.63
COL7A1-210ENST00000487017 ZNF444Q8N0Y2 327 aaPredicted RBP18.96■□□□□ 0.63
COL7A1-210ENST00000487017 CCDC144CPQ8IYA2 1237 aa18.95■□□□□ 0.62
COL7A1-210ENST00000487017 PYM1Q9BRP8 204 aaKnown RBP18.95■□□□□ 0.62
COL7A1-210ENST00000487017 RBM8AQ9Y5S9 174 aaKnown RBP18.95■□□□□ 0.62
COL7A1-210ENST00000487017 RLBP1P12271 317 aa18.95■□□□□ 0.62
COL7A1-210ENST00000487017 MICU3Q86XE3 530 aa18.95■□□□□ 0.62
COL7A1-210ENST00000487017 SNRKQ9NRH2 765 aa18.95■□□□□ 0.62
COL7A1-210ENST00000487017 ATP5J2-PTCD1G3V325 749 aa18.95■□□□□ 0.62
COL7A1-210ENST00000487017 BMS1Q14692 1282 aaKnown RBP18.95■□□□□ 0.62
COL7A1-210ENST00000487017 C16orf71Q8IYS4 520 aaPredicted RBP18.95■□□□□ 0.62
COL7A1-210ENST00000487017 ZKSCAN5Q9Y2L8 839 aa18.95■□□□□ 0.62
COL7A1-210ENST00000487017 ISM2Q6H9L7 571 aa18.94■□□□□ 0.62
COL7A1-210ENST00000487017 FOXO3O43524 673 aa18.94■□□□□ 0.62
COL7A1-210ENST00000487017 KIF20AO95235 890 aa18.94■□□□□ 0.62
COL7A1-210ENST00000487017 IFNL2Q8IZJ0 200 aa18.94■□□□□ 0.62
COL7A1-210ENST00000487017 DCAF8L1A6NGE4 600 aa18.94■□□□□ 0.62
COL7A1-210ENST00000487017 MTIF2P46199 727 aaKnown RBP18.94■□□□□ 0.62
COL7A1-210ENST00000487017 TDRD12Q587J7 1177 aaKnown RBP18.94■□□□□ 0.62
COL7A1-210ENST00000487017 CCDC178Q5BJE1 867 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 CHPF2Q9P2E5 772 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 SPDYE4A6NLX3 237 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 SLC26A6Q9BXS9 759 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 DCTPP1Q9H773 170 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 PPFIA3O75145 1194 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 SYKP43405 635 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 LDHAL6AQ6ZMR3 332 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 ALS2CR12Q96Q35 445 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 DENND4BO75064 1496 aaPredicted RBP18.93■□□□□ 0.62
COL7A1-210ENST00000487017 ANXA1P04083 346 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 PRIM1P49642 420 aaKnown RBP18.93■□□□□ 0.62
COL7A1-210ENST00000487017 MFSD6Q6ZSS7 791 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 RAB11FIP4Q86YS3 637 aa18.93■□□□□ 0.62
COL7A1-210ENST00000487017 GNG11P61952 73 aa18.92■□□□□ 0.62
COL7A1-210ENST00000487017 DDX46Q7L014 1031 aaKnown RBP18.92■□□□□ 0.62
COL7A1-210ENST00000487017 TCOF1Q13428 1488 aaKnown RBP18.92■□□□□ 0.62
COL7A1-210ENST00000487017 POTEJP0CG39 1038 aa18.92■□□□□ 0.62
COL7A1-210ENST00000487017 KCNG4Q8TDN1 519 aa18.92■□□□□ 0.62
COL7A1-210ENST00000487017 NEBLO76041 1014 aa18.92■□□□□ 0.62
COL7A1-210ENST00000487017 CCDC186Q7Z3E2 898 aa18.92■□□□□ 0.62
COL7A1-210ENST00000487017 CETN2P41208 172 aa18.92■□□□□ 0.62
COL7A1-210ENST00000487017 ZBTB40Q9NUA8 1239 aa18.92■□□□□ 0.62
COL7A1-210ENST00000487017 KLF18A0A0U1RQI7 1052 aa18.92■□□□□ 0.62
COL7A1-210ENST00000487017 AMPD3Q01432 767 aa18.92■□□□□ 0.62
COL7A1-210ENST00000487017 SNRPA1P09661 255 aaKnown RBP18.91■□□□□ 0.62
COL7A1-210ENST00000487017 CCDC12Q8WUD4 166 aaPredicted RBP18.91■□□□□ 0.62
COL7A1-210ENST00000487017 TESK2Q96S53 571 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 EZRP15311 586 aaKnown RBP18.91■□□□□ 0.62
COL7A1-210ENST00000487017 DNM1Q05193 864 aaKnown RBP18.91■□□□□ 0.62
COL7A1-210ENST00000487017 DACT1Q9NYF0 836 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 ALDH1L1O75891 902 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 SKILP12757 684 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 GPTP24298 496 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 GTF2F1P35269 517 aaKnown RBP eCLIP18.91■□□□□ 0.62
COL7A1-210ENST00000487017 FAM114A1Q8IWE2 563 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 DYDC1Q8WWB3 177 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 TCP11L1Q9NUJ3 509 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 KIF5BP33176 963 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 UBASH3AP57075 661 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 MRPS27Q92552 414 aaKnown RBP18.91■□□□□ 0.62
COL7A1-210ENST00000487017 SMARCC1Q92922 1105 aaPredicted RBP18.91■□□□□ 0.62
COL7A1-210ENST00000487017 UBA5Q9GZZ9 404 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 HS1BP3Q53T59 392 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 ANKRD13DQ6ZTN6 518 aa18.91■□□□□ 0.62
COL7A1-210ENST00000487017 DNA2P51530 1060 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 TNIP1Q15025 636 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 CEP85Q6P2H3 762 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 TCEANC2Q96MN5 208 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 TEX13AQ9BXU3 409 aaPredicted RBP18.9■□□□□ 0.62
COL7A1-210ENST00000487017 ANKIB1Q9P2G1 1089 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 IFFO1Q0D2I5 559 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 CALML4Q96GE6 196 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 TTC21AQ8NDW8 1320 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 CRACR2BQ8N4Y2 399 aaPredicted RBP18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms