RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SLFN5Q08AF3 891 aa18.94■□□□□ 0.62
USP4-212ENST00000486549 PPP1R42Q7Z4L9 355 aa18.94■□□□□ 0.62
USP4-212ENST00000486549 ZNF622Q969S3 477 aaKnown RBP eCLIP18.94■□□□□ 0.62
USP4-212ENST00000486549 ATP5J2-PTCD1G3V325 749 aa18.93■□□□□ 0.62
USP4-212ENST00000486549 ARHGAP27Q6ZUM4 889 aa18.93■□□□□ 0.62
USP4-212ENST00000486549 G2E3Q7L622 706 aa18.93■□□□□ 0.62
USP4-212ENST00000486549 NLRP10Q86W26 655 aa18.93■□□□□ 0.62
USP4-212ENST00000486549 UTP14AQ9BVJ6 771 aaKnown RBP18.93■□□□□ 0.62
USP4-212ENST00000486549 GPBP1L1Q9HC44 474 aaPredicted RBP18.93■□□□□ 0.62
USP4-212ENST00000486549 C1QTNF8P60827 252 aa18.91■□□□□ 0.62
USP4-212ENST00000486549 MYD88Q99836 296 aa18.91■□□□□ 0.62
USP4-212ENST00000486549 MAP3K2Q9Y2U5 619 aa18.91■□□□□ 0.62
USP4-212ENST00000486549 ADCY9O60503 1353 aa18.91■□□□□ 0.62
USP4-212ENST00000486549 FLIIQ13045 1269 aa18.9■□□□□ 0.62
USP4-212ENST00000486549 TTLL6Q8N841 843 aa18.9■□□□□ 0.62
USP4-212ENST00000486549 ISCA1Q9BUE6 129 aa18.9■□□□□ 0.62
USP4-212ENST00000486549 TRMT112Q9UI30 125 aaKnown RBP18.9■□□□□ 0.62
USP4-212ENST00000486549 PI4KAP2A4QPH2 592 aa18.89■□□□□ 0.61
USP4-212ENST00000486549 SRGNP10124 158 aa18.89■□□□□ 0.61
USP4-212ENST00000486549 FKBP5Q13451 457 aaPredicted RBP18.89■□□□□ 0.61
USP4-212ENST00000486549 KSR2Q6VAB6 950 aa18.89■□□□□ 0.61
USP4-212ENST00000486549 PI4KAP1Q8N8J0 262 aa18.89■□□□□ 0.61
USP4-212ENST00000486549 SYNE4Q8N205 404 aa18.88■□□□□ 0.61
USP4-212ENST00000486549 MASTLQ96GX5 879 aa18.88■□□□□ 0.61
USP4-212ENST00000486549 METTL22Q9BUU2 404 aaPredicted RBP18.88■□□□□ 0.61
USP4-212ENST00000486549 ZNF219Q9P2Y4 722 aaPredicted RBP18.88■□□□□ 0.61
USP4-212ENST00000486549 RIC1Q4ADV7 1423 aa18.88■□□□□ 0.61
USP4-212ENST00000486549 LAMB2P55268 1798 aa18.88■□□□□ 0.61
USP4-212ENST00000486549 SLX4Q8IY92 1834 aa18.88■□□□□ 0.61
USP4-212ENST00000486549 NPR1P16066 1061 aa18.87■□□□□ 0.61
USP4-212ENST00000486549 RTL5Q5HYW3 569 aaPredicted RBP18.87■□□□□ 0.61
USP4-212ENST00000486549 RNF123Q5XPI4 1314 aa18.87■□□□□ 0.61
USP4-212ENST00000486549 STYK1Q6J9G0 422 aa18.87■□□□□ 0.61
USP4-212ENST00000486549 DDX60Q8IY21 1712 aaKnown RBP18.87■□□□□ 0.61
USP4-212ENST00000486549 SH3TC1Q8TE82 1336 aa18.87■□□□□ 0.61
USP4-212ENST00000486549 KLRG2A4D1S0 409 aaPredicted RBP18.86■□□□□ 0.61
USP4-212ENST00000486549 HCLS1P14317 486 aaPredicted RBP18.86■□□□□ 0.61
USP4-212ENST00000486549 C3orf67Q6ZVT6 689 aa18.86■□□□□ 0.61
USP4-212ENST00000486549 TRMT2AQ8IZ69 625 aaKnown RBP18.86■□□□□ 0.61
USP4-212ENST00000486549 RPGRQ92834 1020 aaKnown RBP18.86■□□□□ 0.61
USP4-212ENST00000486549 CNKSR1Q969H4 720 aa18.86■□□□□ 0.61
USP4-212ENST00000486549 NEXNQ0ZGT2 675 aa18.85■□□□□ 0.61
USP4-212ENST00000486549 PRPF40BQ6NWY9 871 aaKnown RBP18.85■□□□□ 0.61
USP4-212ENST00000486549 FAM89AQ96GI7 184 aa18.85■□□□□ 0.61
USP4-212ENST00000486549 TRIM28Q13263 835 aaKnown RBP18.84■□□□□ 0.61
USP4-212ENST00000486549 NLRP3Q96P20 1036 aa18.84■□□□□ 0.61
USP4-212ENST00000486549 CWC25Q9NXE8 425 aaPredicted RBP18.84■□□□□ 0.61
USP4-212ENST00000486549 C21orf2O43822 256 aa18.83■□□□□ 0.6
USP4-212ENST00000486549 CRY2Q49AN0 593 aa18.83■□□□□ 0.6
USP4-212ENST00000486549 SLC10A5Q5PT55 438 aa18.83■□□□□ 0.6
USP4-212ENST00000486549 CCDC191Q8NCU4 936 aa18.83■□□□□ 0.6
USP4-212ENST00000486549 DNAAF4Q8WXU2 420 aa18.83■□□□□ 0.6
USP4-212ENST00000486549 BCL2L13Q9BXK5 485 aa18.83■□□□□ 0.6
USP4-212ENST00000486549 F6X3S4 739 aa18.82■□□□□ 0.6
USP4-212ENST00000486549 IGKV5-2P06315 115 aa18.82■□□□□ 0.6
USP4-212ENST00000486549 CWF19L2Q2TBE0 894 aaKnown RBP18.82■□□□□ 0.6
USP4-212ENST00000486549 C9orf131Q5VYM1 1079 aa18.82■□□□□ 0.6
USP4-212ENST00000486549 ZNF526Q8TF50 670 aaPredicted RBP18.82■□□□□ 0.6
USP4-212ENST00000486549 SSH1Q8WYL5 1049 aa18.82■□□□□ 0.6
USP4-212ENST00000486549 JARID2Q92833 1246 aaPredicted RBP18.82■□□□□ 0.6
USP4-212ENST00000486549 ZC3H4Q9UPT8 1303 aaKnown RBP18.81■□□□□ 0.6
USP4-212ENST00000486549 ALDH1B1P30837 517 aa18.81■□□□□ 0.6
USP4-212ENST00000486549 RASSF7Q02833 373 aa18.81■□□□□ 0.6
USP4-212ENST00000486549 MRPL50Q8N5N7 158 aaKnown RBP18.81■□□□□ 0.6
USP4-212ENST00000486549 ZBTB38Q8NAP3 1195 aaPredicted RBP18.81■□□□□ 0.6
USP4-212ENST00000486549 RBM17Q96I25 401 aaKnown RBP18.81■□□□□ 0.6
USP4-212ENST00000486549 NEURL1BA8MQ27 555 aa18.8■□□□□ 0.6
USP4-212ENST00000486549 IRS4O14654 1257 aaPredicted RBP18.8■□□□□ 0.6
USP4-212ENST00000486549 SOGA3Q5TF21 947 aa18.8■□□□□ 0.6
USP4-212ENST00000486549 FER1L6Q2WGJ9 1857 aa18.8■□□□□ 0.6
USP4-212ENST00000486549 ZBED9Q6R2W3 1325 aa18.79■□□□□ 0.6
USP4-212ENST00000486549 KDM2BQ8NHM5 1336 aa18.79■□□□□ 0.6
USP4-212ENST00000486549 PCCAP05165 728 aaPredicted RBP18.79■□□□□ 0.6
USP4-212ENST00000486549 SMC4Q9NTJ3 1288 aa18.79■□□□□ 0.6
USP4-212ENST00000486549 RNF181Q9P0P0 153 aa18.79■□□□□ 0.6
USP4-212ENST00000486549 SBF1O95248 1867 aa18.79■□□□□ 0.6
USP4-212ENST00000486549 TAF1P21675 1872 aa18.79■□□□□ 0.6
USP4-212ENST00000486549 CCDC88AQ3V6T2 1871 aa18.79■□□□□ 0.6
USP4-212ENST00000486549 CT47B1P0C2W7 299 aaPredicted RBP18.78■□□□□ 0.6
USP4-212ENST00000486549 LMNB1P20700 586 aa18.78■□□□□ 0.6
USP4-212ENST00000486549 HOXA10P31260 410 aaPredicted RBP18.78■□□□□ 0.6
USP4-212ENST00000486549 OLFM4Q6UX06 510 aa18.78■□□□□ 0.6
USP4-212ENST00000486549 ABCC4O15439 1325 aa18.77■□□□□ 0.6
USP4-212ENST00000486549 ALDH1L2Q3SY69 923 aa18.77■□□□□ 0.6
USP4-212ENST00000486549 SLC4A10Q6U841 1118 aa18.77■□□□□ 0.6
USP4-212ENST00000486549 LINS1Q8NG48 757 aa18.77■□□□□ 0.6
USP4-212ENST00000486549 CRAMP1Q96RY5 1269 aa18.77■□□□□ 0.6
USP4-212ENST00000486549 MYH3P11055 1940 aa18.76■□□□□ 0.59
USP4-212ENST00000486549 NFKBIEO00221 500 aa18.76■□□□□ 0.59
USP4-212ENST00000486549 PPEF1O14829 653 aaPredicted RBP18.76■□□□□ 0.59
USP4-212ENST00000486549 GCKRQ14397 625 aa18.76■□□□□ 0.59
USP4-212ENST00000486549 CCDC93Q567U6 631 aa18.76■□□□□ 0.59
USP4-212ENST00000486549 DDX46Q7L014 1031 aaKnown RBP18.76■□□□□ 0.59
USP4-212ENST00000486549 BEND3Q5T5X7 828 aa18.75■□□□□ 0.59
USP4-212ENST00000486549 UBE3BQ7Z3V4 1068 aa18.75■□□□□ 0.59
USP4-212ENST00000486549 SLC51AQ86UW1 340 aa18.75■□□□□ 0.59
USP4-212ENST00000486549 C7orf43Q8WVR3 580 aa18.75■□□□□ 0.59
USP4-212ENST00000486549 PTPRCP08575 1304 aa18.74■□□□□ 0.59
USP4-212ENST00000486549 CDHR2Q9BYE9 1310 aa18.74■□□□□ 0.59
USP4-212ENST00000486549 HSP90B1P14625 803 aaKnown RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms