RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 ANKRD13DQ6ZTN6 518 aa23.87■■□□□ 1.41
PRPF40A-209ENST00000486100 RRAGCQ9HB90 399 aa23.87■■□□□ 1.41
PRPF40A-209ENST00000486100 SBF1O95248 1867 aa23.87■■□□□ 1.41
PRPF40A-209ENST00000486100 SLX4Q8IY92 1834 aa23.87■■□□□ 1.41
PRPF40A-209ENST00000486100 ELL2O00472 640 aaPredicted RBP23.86■■□□□ 1.41
PRPF40A-209ENST00000486100 NCBP3Q53F19 620 aaKnown RBP23.86■■□□□ 1.41
PRPF40A-209ENST00000486100 NLRP10Q86W26 655 aa23.86■■□□□ 1.41
PRPF40A-209ENST00000486100 PLBD2Q8NHP8 589 aa23.86■■□□□ 1.41
PRPF40A-209ENST00000486100 RPGRQ92834 1020 aaKnown RBP23.86■■□□□ 1.41
PRPF40A-209ENST00000486100 NLRP3Q96P20 1036 aa23.86■■□□□ 1.41
PRPF40A-209ENST00000486100 WWC1Q8IX03 1113 aa23.85■■□□□ 1.41
PRPF40A-209ENST00000486100 RTKN2Q8IZC4 609 aa23.85■■□□□ 1.41
PRPF40A-209ENST00000486100 RNF123Q5XPI4 1314 aa23.84■■□□□ 1.41
PRPF40A-209ENST00000486100 DPY19L2Q6NUT2 758 aa23.84■■□□□ 1.41
PRPF40A-209ENST00000486100 C8orf58Q8NAV2 365 aa23.84■■□□□ 1.41
PRPF40A-209ENST00000486100 RBM17Q96I25 401 aaKnown RBP23.84■■□□□ 1.41
PRPF40A-209ENST00000486100 OLFM4Q6UX06 510 aa23.83■■□□□ 1.41
PRPF40A-209ENST00000486100 C16orf71Q8IYS4 520 aaPredicted RBP23.83■■□□□ 1.41
PRPF40A-209ENST00000486100 CRAMP1Q96RY5 1269 aa23.83■■□□□ 1.41
PRPF40A-209ENST00000486100 CHMP4AQ9BY43 222 aa23.83■■□□□ 1.41
PRPF40A-209ENST00000486100 HSPA6P17066 643 aa23.82■■□□□ 1.4
PRPF40A-209ENST00000486100 FKBP4Q02790 459 aaKnown RBP eCLIP23.82■■□□□ 1.4
PRPF40A-209ENST00000486100 C3orf67Q6ZVT6 689 aa23.82■■□□□ 1.4
PRPF40A-209ENST00000486100 TRMT112Q9UI30 125 aaKnown RBP23.82■■□□□ 1.4
PRPF40A-209ENST00000486100 CC2D2BQ6DHV5 1058 aa23.81■■□□□ 1.4
PRPF40A-209ENST00000486100 RBM46Q8TBY0 533 aaKnown RBP23.81■■□□□ 1.4
PRPF40A-209ENST00000486100 VEGFAP15692 232 aaPredicted RBP23.8■■□□□ 1.4
PRPF40A-209ENST00000486100 ISCA1Q9BUE6 129 aa23.8■■□□□ 1.4
PRPF40A-209ENST00000486100 FER1L6Q2WGJ9 1857 aa23.79■■□□□ 1.4
PRPF40A-209ENST00000486100 CCDC30Q5VVM6 783 aa23.79■■□□□ 1.4
PRPF40A-209ENST00000486100 SYNE4Q8N205 404 aa23.79■■□□□ 1.4
PRPF40A-209ENST00000486100 TSR2Q969E8 191 aaKnown RBP23.79■■□□□ 1.4
PRPF40A-209ENST00000486100 PHAXQ9H814 394 aaKnown RBP23.79■■□□□ 1.4
PRPF40A-209ENST00000486100 TNRC6CQ9HCJ0 1690 aaKnown RBP23.79■■□□□ 1.4
PRPF40A-209ENST00000486100 IL16Q14005 1332 aa23.79■■□□□ 1.4
PRPF40A-209ENST00000486100 SH3TC1Q8TE82 1336 aa23.79■■□□□ 1.4
PRPF40A-209ENST00000486100 ARFGEF2Q9Y6D5 1785 aa23.78■■□□□ 1.4
PRPF40A-209ENST00000486100 HCLS1P14317 486 aaPredicted RBP23.78■■□□□ 1.4
PRPF40A-209ENST00000486100 GRIPAP1Q4V328 841 aa23.78■■□□□ 1.4
PRPF40A-209ENST00000486100 TSPYL6Q8N831 410 aa23.78■■□□□ 1.4
PRPF40A-209ENST00000486100 ZNF277Q9NRM2 450 aaPredicted RBP23.78■■□□□ 1.4
PRPF40A-209ENST00000486100 ATP5J2-PTCD1G3V325 749 aa23.77■■□□□ 1.4
PRPF40A-209ENST00000486100 TRIM28Q13263 835 aaKnown RBP23.77■■□□□ 1.4
PRPF40A-209ENST00000486100 RIC3Q7Z5B4 369 aa23.77■■□□□ 1.4
PRPF40A-209ENST00000486100 PSMD1Q99460 953 aa23.77■■□□□ 1.4
PRPF40A-209ENST00000486100 GOLGA2Q08379 1002 aa23.76■■□□□ 1.39
PRPF40A-209ENST00000486100 POTECB2RU33 542 aa23.75■■□□□ 1.39
PRPF40A-209ENST00000486100 PPEF1O14829 653 aaPredicted RBP23.75■■□□□ 1.39
PRPF40A-209ENST00000486100 FSTL1Q12841 308 aa23.75■■□□□ 1.39
PRPF40A-209ENST00000486100 IARSP41252 1262 aaKnown RBP23.74■■□□□ 1.39
PRPF40A-209ENST00000486100 WDR63Q8IWG1 891 aa23.74■■□□□ 1.39
PRPF40A-209ENST00000486100 SALL2Q9Y467 1007 aaPredicted RBP23.74■■□□□ 1.39
PRPF40A-209ENST00000486100 TCERG1O14776 1098 aaKnown RBP23.73■■□□□ 1.39
PRPF40A-209ENST00000486100 BBOX1O75936 387 aa23.73■■□□□ 1.39
PRPF40A-209ENST00000486100 DDNO94850 711 aaPredicted RBP23.73■■□□□ 1.39
PRPF40A-209ENST00000486100 FAM9BQ8IZU0 186 aa23.73■■□□□ 1.39
PRPF40A-209ENST00000486100 ZNF428Q96B54 188 aa23.73■■□□□ 1.39
PRPF40A-209ENST00000486100 FAM89AQ96GI7 184 aa23.73■■□□□ 1.39
PRPF40A-209ENST00000486100 TMX4Q9H1E5 349 aaPredicted RBP23.73■■□□□ 1.39
PRPF40A-209ENST00000486100 SNED1Q8TER0 1413 aa23.73■■□□□ 1.39
PRPF40A-209ENST00000486100 CACNA1SQ13698 1873 aa23.73■■□□□ 1.39
PRPF40A-209ENST00000486100 TWISTNBQ3B726 338 aaPredicted RBP23.72■■□□□ 1.39
PRPF40A-209ENST00000486100 ATP6V0A2Q9Y487 856 aa23.72■■□□□ 1.39
PRPF40A-209ENST00000486100 ABCC4O15439 1325 aa23.72■■□□□ 1.39
PRPF40A-209ENST00000486100 CCDC88AQ3V6T2 1871 aa23.72■■□□□ 1.39
PRPF40A-209ENST00000486100 DDX58O95786 925 aaKnown RBP23.71■■□□□ 1.39
PRPF40A-209ENST00000486100 APLP1P51693 650 aa23.71■■□□□ 1.39
PRPF40A-209ENST00000486100 DDX46Q7L014 1031 aaKnown RBP23.71■■□□□ 1.39
PRPF40A-209ENST00000486100 SMC1BQ8NDV3 1235 aa23.7■■□□□ 1.38
PRPF40A-209ENST00000486100 MYD88Q99836 296 aa23.7■■□□□ 1.38
PRPF40A-209ENST00000486100 STK31Q9BXU1 1019 aa23.7■■□□□ 1.38
PRPF40A-209ENST00000486100 TIAM2Q8IVF5 1701 aa23.7■■□□□ 1.38
PRPF40A-209ENST00000486100 FZD9O00144 591 aa23.69■■□□□ 1.38
PRPF40A-209ENST00000486100 GRAPQ13588 217 aa23.69■■□□□ 1.38
PRPF40A-209ENST00000486100 SF3B3Q15393 1217 aaKnown RBP23.69■■□□□ 1.38
PRPF40A-209ENST00000486100 SP8Q8IXZ3 490 aa23.69■■□□□ 1.38
PRPF40A-209ENST00000486100 GRAPLQ8TC17 118 aaPredicted RBP23.69■■□□□ 1.38
PRPF40A-209ENST00000486100 JDP2Q8WYK2 163 aa23.69■■□□□ 1.38
PRPF40A-209ENST00000486100 ANKRD36CQ5JPF3 1778 aa23.68■■□□□ 1.38
PRPF40A-209ENST00000486100 SLC51AQ86UW1 340 aa23.68■■□□□ 1.38
PRPF40A-209ENST00000486100 ZBTB38Q8NAP3 1195 aaPredicted RBP23.68■■□□□ 1.38
PRPF40A-209ENST00000486100 CCDC191Q8NCU4 936 aa23.68■■□□□ 1.38
PRPF40A-209ENST00000486100 METTL22Q9BUU2 404 aaPredicted RBP23.68■■□□□ 1.38
PRPF40A-209ENST00000486100 DICER1Q9UPY3 1922 aaKnown RBP23.68■■□□□ 1.38
PRPF40A-209ENST00000486100 IRS4O14654 1257 aaPredicted RBP23.67■■□□□ 1.38
PRPF40A-209ENST00000486100 RTL5Q5HYW3 569 aaPredicted RBP23.67■■□□□ 1.38
PRPF40A-209ENST00000486100 KSR2Q6VAB6 950 aa23.67■■□□□ 1.38
PRPF40A-209ENST00000486100 L3MBTL3Q96JM7 780 aaPredicted RBP23.67■■□□□ 1.38
PRPF40A-209ENST00000486100 ZNF541Q9H0D2 1346 aa23.66■■□□□ 1.38
PRPF40A-209ENST00000486100 FANCIQ9NVI1 1328 aa23.66■■□□□ 1.38
PRPF40A-209ENST00000486100 SLC4A2P04920 1241 aa23.66■■□□□ 1.38
PRPF40A-209ENST00000486100 VPS33BQ9H267 617 aa23.66■■□□□ 1.38
PRPF40A-209ENST00000486100 MAP3K2Q9Y2U5 619 aa23.66■■□□□ 1.38
PRPF40A-209ENST00000486100 WDR90Q96KV7 1748 aa23.66■■□□□ 1.38
PRPF40A-209ENST00000486100 PI4KAP2A4QPH2 592 aa23.65■■□□□ 1.38
PRPF40A-209ENST00000486100 IQCA1LA6NCM1 817 aa23.65■■□□□ 1.38
PRPF40A-209ENST00000486100 HSP90B1P14625 803 aaKnown RBP23.65■■□□□ 1.38
PRPF40A-209ENST00000486100 TMC4Q7Z404 712 aa23.65■■□□□ 1.38
PRPF40A-209ENST00000486100 LARGE2Q8N3Y3 721 aa23.65■■□□□ 1.38
PRPF40A-209ENST00000486100 PI4KAP1Q8N8J0 262 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms