RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 SPATA31C1P0DKV0 1188 aa7.6□□□□□ -1.19
VPS13A-211ENST00000484581 PRRT3Q5FWE3 981 aa7.6□□□□□ -1.19
VPS13A-211ENST00000484581 SH3PXD2AQ5TCZ1 1133 aa7.6□□□□□ -1.19
VPS13A-211ENST00000484581 B4GALNT3Q6L9W6 998 aa7.6□□□□□ -1.19
VPS13A-211ENST00000484581 SND1Q7KZF4 910 aaKnown RBP eCLIP7.6□□□□□ -1.19
VPS13A-211ENST00000484581 LARGE2Q8N3Y3 721 aa7.6□□□□□ -1.19
VPS13A-211ENST00000484581 OGFOD1Q8N543 542 aa7.6□□□□□ -1.19
VPS13A-211ENST00000484581 C7orf43Q8WVR3 580 aa7.6□□□□□ -1.19
VPS13A-211ENST00000484581 FOXD4L4Q8WXT5 416 aaPredicted RBP7.6□□□□□ -1.19
VPS13A-211ENST00000484581 TSPAN10Q9H1Z9 355 aaPredicted RBP7.6□□□□□ -1.19
VPS13A-211ENST00000484581 SEMA6BQ9H3T3 888 aa7.6□□□□□ -1.19
VPS13A-211ENST00000484581 MKRN1Q9UHC7 482 aaKnown RBP7.6□□□□□ -1.19
VPS13A-211ENST00000484581 SFI1A8K8P3 1242 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 ADARB2-AS1A8MUL3 147 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 GATA4P43694 442 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 CLDN10P78369 228 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 SPEM2Q0P670 501 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 ELOAQ14241 798 aaKnown RBP7.59□□□□□ -1.19
VPS13A-211ENST00000484581 CCDC27Q2M243 656 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 ZMYM1Q5SVZ6 1142 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 SLC30A3Q99726 388 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 PHACTR1Q9C0D0 580 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 KIAA1024Q9UPX6 916 aa7.59□□□□□ -1.19
VPS13A-211ENST00000484581 DOC2BQ14184 412 aa7.58□□□□□ -1.2
VPS13A-211ENST00000484581 LCE3BQ5TA77 95 aa7.58□□□□□ -1.2
VPS13A-211ENST00000484581 BRD7Q9NPI1 651 aa7.58□□□□□ -1.2
VPS13A-211ENST00000484581 GNEQ9Y223 722 aaKnown RBP7.58□□□□□ -1.2
VPS13A-211ENST00000484581 M0R082 166 aa7.57□□□□□ -1.2
VPS13A-211ENST00000484581 M0R2N6 131 aa7.57□□□□□ -1.2
VPS13A-211ENST00000484581 PPP1R12BO60237 982 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-211ENST00000484581 APBA3O96018 575 aa7.57□□□□□ -1.2
VPS13A-211ENST00000484581 RBM25P49756 843 aaKnown RBP7.57□□□□□ -1.2
VPS13A-211ENST00000484581 CDCA8Q53HL2 280 aa7.57□□□□□ -1.2
VPS13A-211ENST00000484581 ZNF417Q8TAU3 575 aa7.57□□□□□ -1.2
VPS13A-211ENST00000484581 ZNF587Q96SQ5 575 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-211ENST00000484581 KRTAP4-12Q9BQ66 201 aa7.57□□□□□ -1.2
VPS13A-211ENST00000484581 KCNH4Q9UQ05 1017 aa7.57□□□□□ -1.2
VPS13A-211ENST00000484581 HIRAP54198 1017 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-211ENST00000484581 TRIM28Q13263 835 aaKnown RBP7.56□□□□□ -1.2
VPS13A-211ENST00000484581 TSEN2Q8NCE0 465 aaKnown RBP7.56□□□□□ -1.2
VPS13A-211ENST00000484581 TNFRSF25Q93038 417 aa7.56□□□□□ -1.2
VPS13A-211ENST00000484581 ZNF594Q96JF6 807 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-211ENST00000484581 HSH2DQ96JZ2 352 aa7.56□□□□□ -1.2
VPS13A-211ENST00000484581 SUSD3Q96L08 255 aa7.56□□□□□ -1.2
VPS13A-211ENST00000484581 AMOTL2Q9Y2J4 779 aa7.56□□□□□ -1.2
VPS13A-211ENST00000484581 RASA1P20936 1047 aa7.55□□□□□ -1.2
VPS13A-211ENST00000484581 ADH7P40394 386 aa7.55□□□□□ -1.2
VPS13A-211ENST00000484581 KANK4Q5T7N3 995 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-211ENST00000484581 RAB44Q7Z6P3 723 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-211ENST00000484581 SIX5Q8N196 739 aa7.55□□□□□ -1.2
VPS13A-211ENST00000484581 KCNQ4P56696 695 aa7.54□□□□□ -1.2
VPS13A-211ENST00000484581 HIF1AQ16665 826 aa7.54□□□□□ -1.2
VPS13A-211ENST00000484581 MICALL1Q8N3F8 863 aa7.54□□□□□ -1.2
VPS13A-211ENST00000484581 ZNF280CQ8ND82 737 aa7.54□□□□□ -1.2
VPS13A-211ENST00000484581 MDFIQ99750 246 aa7.54□□□□□ -1.2
VPS13A-211ENST00000484581 PRDM6Q9NQX0 595 aa7.54□□□□□ -1.2
VPS13A-211ENST00000484581 ZMIZ1Q9ULJ6 1067 aa7.54□□□□□ -1.2
VPS13A-211ENST00000484581 TBC1D8BQ0IIM8 1120 aa7.53□□□□□ -1.2
VPS13A-211ENST00000484581 ALDH16A1Q8IZ83 802 aa7.53□□□□□ -1.2
VPS13A-211ENST00000484581 GAS2L2Q8NHY3 880 aa7.53□□□□□ -1.2
VPS13A-211ENST00000484581 CHMP7Q8WUX9 453 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-211ENST00000484581 SCG3Q8WXD2 468 aaKnown RBP7.53□□□□□ -1.2
VPS13A-211ENST00000484581 BHMTQ93088 406 aa7.53□□□□□ -1.2
VPS13A-211ENST00000484581 NACC1Q96RE7 527 aa7.53□□□□□ -1.2
VPS13A-211ENST00000484581 IGFLR1Q9H665 355 aa7.53□□□□□ -1.2
VPS13A-211ENST00000484581 STARD13Q9Y3M8 1113 aa7.53□□□□□ -1.2
VPS13A-211ENST00000484581 ATAD2Q6PL18 1390 aa7.53□□□□□ -1.2
VPS13A-211ENST00000484581 FAM196BA6NMK8 535 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 ALBP02768 609 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 SEC13P55735 322 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 TYRO3Q06418 890 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 TRAPPC3LQ5T215 181 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 TMEM164Q5U3C3 297 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 LARP1Q6PKG0 1096 aaKnown RBP7.52□□□□□ -1.21
VPS13A-211ENST00000484581 POTEAQ6S8J7 498 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 STAG2Q8N3U4 1231 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 ZNF428Q96B54 188 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 NGLY1Q96IV0 654 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 HINFPQ9BQA5 517 aa7.52□□□□□ -1.21
VPS13A-211ENST00000484581 NOVA2Q9UNW9 492 aaKnown RBP7.52□□□□□ -1.21
VPS13A-211ENST00000484581 SCO2A0A1W2PP80 73 aa7.51□□□□□ -1.21
VPS13A-211ENST00000484581 FAM229AH3BQW9 127 aa7.51□□□□□ -1.21
VPS13A-211ENST00000484581 LILRB5O75023 590 aa7.51□□□□□ -1.21
VPS13A-211ENST00000484581 FOXD4L6Q3SYB3 417 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-211ENST00000484581 FOXD4L3Q6VB84 417 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-211ENST00000484581 C8orf86Q6ZUL3 223 aa7.51□□□□□ -1.21
VPS13A-211ENST00000484581 BTLAQ7Z6A9 289 aa7.51□□□□□ -1.21
VPS13A-211ENST00000484581 STK32AQ8WU08 396 aa7.51□□□□□ -1.21
VPS13A-211ENST00000484581 C2orf49Q9BVC5 232 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-211ENST00000484581 UBE2OQ9C0C9 1292 aaKnown RBP7.51□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L15C9J2P7 530 aa7.5□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L10C9JJH3 530 aa7.5□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L13C9JLJ4 530 aa7.5□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L12C9JPN9 530 aa7.5□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L11C9JVI0 530 aa7.5□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L21D6R901 530 aa7.5□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L18D6R9N7 530 aa7.5□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L22D6RA61 530 aa7.5□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L17D6RBQ6 530 aa7.5□□□□□ -1.21
VPS13A-211ENST00000484581 USP17L19D6RCP7 530 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms