RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 PHAXQ9H814 394 aaKnown RBP20.22■□□□□ 0.83
CCDC28B-205ENST00000483009 RNF181Q9P0P0 153 aa20.22■□□□□ 0.83
CCDC28B-205ENST00000483009 SOGA3Q5TF21 947 aa20.21■□□□□ 0.83
CCDC28B-205ENST00000483009 ISCA1Q9BUE6 129 aa20.21■□□□□ 0.83
CCDC28B-205ENST00000483009 STK31Q9BXU1 1019 aa20.21■□□□□ 0.83
CCDC28B-205ENST00000483009 GPBP1L1Q9HC44 474 aaPredicted RBP20.21■□□□□ 0.83
CCDC28B-205ENST00000483009 ALDH1B1P30837 517 aa20.2■□□□□ 0.82
CCDC28B-205ENST00000483009 SLC10A5Q5PT55 438 aa20.2■□□□□ 0.82
CCDC28B-205ENST00000483009 RIC3Q7Z5B4 369 aa20.2■□□□□ 0.82
CCDC28B-205ENST00000483009 ZNF526Q8TF50 670 aaPredicted RBP20.2■□□□□ 0.82
CCDC28B-205ENST00000483009 TRMT112Q9UI30 125 aaKnown RBP20.2■□□□□ 0.82
CCDC28B-205ENST00000483009 LMNB1P20700 586 aa20.19■□□□□ 0.82
CCDC28B-205ENST00000483009 C7orf43Q8WVR3 580 aa20.19■□□□□ 0.82
CCDC28B-205ENST00000483009 RPGRQ92834 1020 aaKnown RBP20.19■□□□□ 0.82
CCDC28B-205ENST00000483009 NLRP3Q96P20 1036 aa20.19■□□□□ 0.82
CCDC28B-205ENST00000483009 MYH16Q9H6N6 1097 aa20.19■□□□□ 0.82
CCDC28B-205ENST00000483009 SPINK5Q9NQ38 1064 aaPredicted RBP20.19■□□□□ 0.82
CCDC28B-205ENST00000483009 SH3TC1Q8TE82 1336 aa20.19■□□□□ 0.82
CCDC28B-205ENST00000483009 TNRC6CQ9HCJ0 1690 aaKnown RBP20.19■□□□□ 0.82
CCDC28B-205ENST00000483009 ATP5J2-PTCD1G3V325 749 aa20.18■□□□□ 0.82
CCDC28B-205ENST00000483009 DDX58O95786 925 aaKnown RBP20.18■□□□□ 0.82
CCDC28B-205ENST00000483009 HOXA10P31260 410 aaPredicted RBP20.18■□□□□ 0.82
CCDC28B-205ENST00000483009 TRIM28Q13263 835 aaKnown RBP20.18■□□□□ 0.82
CCDC28B-205ENST00000483009 C3orf67Q6ZVT6 689 aa20.18■□□□□ 0.82
CCDC28B-205ENST00000483009 ZNF521Q96K83 1311 aa20.18■□□□□ 0.82
CCDC28B-205ENST00000483009 TCERG1O14776 1098 aaKnown RBP20.17■□□□□ 0.82
CCDC28B-205ENST00000483009 PRELPP51888 382 aa20.17■□□□□ 0.82
CCDC28B-205ENST00000483009 EXOSC9Q06265 439 aaKnown RBP20.17■□□□□ 0.82
CCDC28B-205ENST00000483009 CCDC93Q567U6 631 aa20.17■□□□□ 0.82
CCDC28B-205ENST00000483009 TAOK3Q9H2K8 898 aa20.17■□□□□ 0.82
CCDC28B-205ENST00000483009 LTBP3Q9NS15 1303 aa20.17■□□□□ 0.82
CCDC28B-205ENST00000483009 SLX4Q8IY92 1834 aa20.16■□□□□ 0.82
CCDC28B-205ENST00000483009 HCLS1P14317 486 aaPredicted RBP20.16■□□□□ 0.82
CCDC28B-205ENST00000483009 SYNE4Q8N205 404 aa20.16■□□□□ 0.82
CCDC28B-205ENST00000483009 RBM17Q96I25 401 aaKnown RBP20.16■□□□□ 0.82
CCDC28B-205ENST00000483009 CRAMP1Q96RY5 1269 aa20.16■□□□□ 0.82
CCDC28B-205ENST00000483009 ZC3H4Q9UPT8 1303 aaKnown RBP20.16■□□□□ 0.82
CCDC28B-205ENST00000483009 VAMP4O75379 141 aa20.15■□□□□ 0.82
CCDC28B-205ENST00000483009 MYD88Q99836 296 aa20.15■□□□□ 0.82
CCDC28B-205ENST00000483009 ANKRD36CQ5JPF3 1778 aa20.14■□□□□ 0.81
CCDC28B-205ENST00000483009 SLC4A2P04920 1241 aa20.14■□□□□ 0.81
CCDC28B-205ENST00000483009 ZNF428Q96B54 188 aa20.14■□□□□ 0.81
CCDC28B-205ENST00000483009 METTL22Q9BUU2 404 aaPredicted RBP20.14■□□□□ 0.81
CCDC28B-205ENST00000483009 OLFM4Q6UX06 510 aa20.13■□□□□ 0.81
CCDC28B-205ENST00000483009 KSR2Q6VAB6 950 aa20.13■□□□□ 0.81
CCDC28B-205ENST00000483009 FAM89AQ96GI7 184 aa20.13■□□□□ 0.81
CCDC28B-205ENST00000483009 ARFGEF2Q9Y6D5 1785 aa20.13■□□□□ 0.81
CCDC28B-205ENST00000483009 PI4KAP2A4QPH2 592 aa20.12■□□□□ 0.81
CCDC28B-205ENST00000483009 DIEXFQ68CQ4 756 aaKnown RBP20.12■□□□□ 0.81
CCDC28B-205ENST00000483009 CC2D2BQ6DHV5 1058 aa20.12■□□□□ 0.81
CCDC28B-205ENST00000483009 G2E3Q7L622 706 aa20.12■□□□□ 0.81
CCDC28B-205ENST00000483009 RTKN2Q8IZC4 609 aa20.12■□□□□ 0.81
CCDC28B-205ENST00000483009 PI4KAP1Q8N8J0 262 aa20.12■□□□□ 0.81
CCDC28B-205ENST00000483009 CCDC191Q8NCU4 936 aa20.12■□□□□ 0.81
CCDC28B-205ENST00000483009 MAP3K2Q9Y2U5 619 aa20.12■□□□□ 0.81
CCDC28B-205ENST00000483009 FKBP4Q02790 459 aaKnown RBP eCLIP20.11■□□□□ 0.81
CCDC28B-205ENST00000483009 FLIIQ13045 1269 aa20.11■□□□□ 0.81
CCDC28B-205ENST00000483009 ABCC4O15439 1325 aa20.1■□□□□ 0.81
CCDC28B-205ENST00000483009 PPEF1O14829 653 aaPredicted RBP20.1■□□□□ 0.81
CCDC28B-205ENST00000483009 C1QTNF8P60827 252 aa20.1■□□□□ 0.81
CCDC28B-205ENST00000483009 ZBTB38Q8NAP3 1195 aaPredicted RBP20.1■□□□□ 0.81
CCDC28B-205ENST00000483009 CWC25Q9NXE8 425 aaPredicted RBP20.1■□□□□ 0.81
CCDC28B-205ENST00000483009 SBF1O95248 1867 aa20.09■□□□□ 0.81
CCDC28B-205ENST00000483009 KDM2BQ8NHM5 1336 aa20.09■□□□□ 0.81
CCDC28B-205ENST00000483009 IRS4O14654 1257 aaPredicted RBP20.09■□□□□ 0.81
CCDC28B-205ENST00000483009 KIF3CO14782 793 aa20.09■□□□□ 0.81
CCDC28B-205ENST00000483009 RTL5Q5HYW3 569 aaPredicted RBP20.09■□□□□ 0.81
CCDC28B-205ENST00000483009 DDX46Q7L014 1031 aaKnown RBP20.09■□□□□ 0.81
CCDC28B-205ENST00000483009 NMRK2Q9NPI5 230 aa20.09■□□□□ 0.81
CCDC28B-205ENST00000483009 FER1L6Q2WGJ9 1857 aa20.09■□□□□ 0.81
CCDC28B-205ENST00000483009 E9PSI1 815 aa20.08■□□□□ 0.81
CCDC28B-205ENST00000483009 PCCAP05165 728 aaPredicted RBP20.08■□□□□ 0.81
CCDC28B-205ENST00000483009 NEXNQ0ZGT2 675 aa20.08■□□□□ 0.81
CCDC28B-205ENST00000483009 SF3B3Q15393 1217 aaKnown RBP20.08■□□□□ 0.81
CCDC28B-205ENST00000483009 GRIPAP1Q4V328 841 aa20.08■□□□□ 0.81
CCDC28B-205ENST00000483009 SNED1Q8TER0 1413 aa20.08■□□□□ 0.8
CCDC28B-205ENST00000483009 IGKV5-2P06315 115 aa20.07■□□□□ 0.8
CCDC28B-205ENST00000483009 HSP90B1P14625 803 aaKnown RBP20.07■□□□□ 0.8
CCDC28B-205ENST00000483009 FKBP5Q13451 457 aaPredicted RBP20.07■□□□□ 0.8
CCDC28B-205ENST00000483009 GRAPQ13588 217 aa20.07■□□□□ 0.8
CCDC28B-205ENST00000483009 GRAPLQ8TC17 118 aaPredicted RBP20.07■□□□□ 0.8
CCDC28B-205ENST00000483009 PSMD1Q99460 953 aa20.07■□□□□ 0.8
CCDC28B-205ENST00000483009 ZNF277Q9NRM2 450 aaPredicted RBP20.07■□□□□ 0.8
CCDC28B-205ENST00000483009 CACNA1SQ13698 1873 aa20.07■□□□□ 0.8
CCDC28B-205ENST00000483009 GLTPD2A6NH11 291 aa20.06■□□□□ 0.8
CCDC28B-205ENST00000483009 BBOX1O75936 387 aa20.06■□□□□ 0.8
CCDC28B-205ENST00000483009 TMX4Q9H1E5 349 aaPredicted RBP20.06■□□□□ 0.8
CCDC28B-205ENST00000483009 ATP6V0A2Q9Y487 856 aa20.06■□□□□ 0.8
CCDC28B-205ENST00000483009 SLC51AQ86UW1 340 aa20.05■□□□□ 0.8
CCDC28B-205ENST00000483009 MIER1Q8N108 512 aa20.05■□□□□ 0.8
CCDC28B-205ENST00000483009 DNAAF4Q8WXU2 420 aa20.05■□□□□ 0.8
CCDC28B-205ENST00000483009 NEURL1BA8MQ27 555 aa20.04■□□□□ 0.8
CCDC28B-205ENST00000483009 IARSP41252 1262 aaKnown RBP20.04■□□□□ 0.8
CCDC28B-205ENST00000483009 SLFN5Q08AF3 891 aa20.04■□□□□ 0.8
CCDC28B-205ENST00000483009 CWF19L2Q2TBE0 894 aaKnown RBP20.03■□□□□ 0.8
CCDC28B-205ENST00000483009 DPY19L2Q6NUT2 758 aa20.03■□□□□ 0.8
CCDC28B-205ENST00000483009 TMC4Q7Z404 712 aa20.03■□□□□ 0.8
CCDC28B-205ENST00000483009 JARID2Q92833 1246 aaPredicted RBP20.03■□□□□ 0.8
CCDC28B-205ENST00000483009 CDHR2Q9BYE9 1310 aa20.02■□□□□ 0.8
CCDC28B-205ENST00000483009 PDE8AO60658 829 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms