RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 NOGQ13253 232 aa10.37□□□□□ -0.75
USP54-213ENST00000481991 AOC3Q16853 763 aa10.37□□□□□ -0.75
USP54-213ENST00000481991 USP48Q86UV5 1035 aa10.37□□□□□ -0.75
USP54-213ENST00000481991 NUTM1Q86Y26 1132 aa10.37□□□□□ -0.75
USP54-213ENST00000481991 IL17REQ8NFR9 667 aa10.37□□□□□ -0.75
USP54-213ENST00000481991 GPRC5DQ9NZD1 345 aa10.37□□□□□ -0.75
USP54-213ENST00000481991 PRAMEF22A3QJZ6 481 aa10.36□□□□□ -0.75
USP54-213ENST00000481991 DIAPH1O60610 1272 aaKnown RBP10.36□□□□□ -0.75
USP54-213ENST00000481991 GMPSP49915 693 aaPredicted RBP10.36□□□□□ -0.75
USP54-213ENST00000481991 CC2D2BQ6DHV5 1058 aa10.36□□□□□ -0.75
USP54-213ENST00000481991 CDC37L1Q7L3B6 337 aa10.36□□□□□ -0.75
USP54-213ENST00000481991 NBPF15Q8N660 670 aa10.36□□□□□ -0.75
USP54-213ENST00000481991 RBM17Q96I25 401 aaKnown RBP10.36□□□□□ -0.75
USP54-213ENST00000481991 SCN11AQ9UI33 1791 aa10.36□□□□□ -0.75
USP54-213ENST00000481991 COL11A2P13942 1736 aaPredicted RBP10.36□□□□□ -0.75
USP54-213ENST00000481991 KLRG2A4D1S0 409 aaPredicted RBP10.35□□□□□ -0.75
USP54-213ENST00000481991 RAD17O75943 681 aa10.35□□□□□ -0.75
USP54-213ENST00000481991 ZNF157P51786 506 aaPredicted RBP10.35□□□□□ -0.75
USP54-213ENST00000481991 KIF23Q02241 960 aaPredicted RBP10.35□□□□□ -0.75
USP54-213ENST00000481991 HLFQ16534 295 aa10.35□□□□□ -0.75
USP54-213ENST00000481991 RBM26Q5T8P6 1007 aaKnown RBP10.35□□□□□ -0.75
USP54-213ENST00000481991 DLK2Q6UY11 383 aa10.35□□□□□ -0.75
USP54-213ENST00000481991 HDAC9Q9UKV0 1011 aa10.35□□□□□ -0.75
USP54-213ENST00000481991 H7C1D1 291 aa10.34□□□□□ -0.75
USP54-213ENST00000481991 PPEF1O14829 653 aaPredicted RBP10.34□□□□□ -0.75
USP54-213ENST00000481991 SNRPA1P09661 255 aaKnown RBP10.34□□□□□ -0.75
USP54-213ENST00000481991 RGMBQ6NW40 437 aa10.34□□□□□ -0.75
USP54-213ENST00000481991 C2orf69Q8N8R5 385 aa10.34□□□□□ -0.75
USP54-213ENST00000481991 GAS2L2Q8NHY3 880 aa10.34□□□□□ -0.75
USP54-213ENST00000481991 HHIPL1Q96JK4 782 aa10.34□□□□□ -0.75
USP54-213ENST00000481991 NYXQ9GZU5 481 aa10.34□□□□□ -0.75
USP54-213ENST00000481991 RNF186Q9NXI6 227 aa10.34□□□□□ -0.75
USP54-213ENST00000481991 CNOT7Q9UIV1 285 aaKnown RBP10.34□□□□□ -0.75
USP54-213ENST00000481991 GPTP24298 496 aa10.33□□□□□ -0.76
USP54-213ENST00000481991 CXCL9Q07325 125 aa10.33□□□□□ -0.76
USP54-213ENST00000481991 TNIP1Q15025 636 aa10.33□□□□□ -0.76
USP54-213ENST00000481991 GRIPAP1Q4V328 841 aa10.33□□□□□ -0.76
USP54-213ENST00000481991 SLC51AQ86UW1 340 aa10.33□□□□□ -0.76
USP54-213ENST00000481991 CCDC102AQ96A19 550 aa10.33□□□□□ -0.76
USP54-213ENST00000481991 ZNRF3Q9ULT6 936 aa10.33□□□□□ -0.76
USP54-213ENST00000481991 HIRAP54198 1017 aaPredicted RBP10.32□□□□□ -0.76
USP54-213ENST00000481991 CTU1Q7Z7A3 348 aaKnown RBP10.32□□□□□ -0.76
USP54-213ENST00000481991 RTF1Q92541 710 aaKnown RBP10.32□□□□□ -0.76
USP54-213ENST00000481991 GCC1Q96CN9 775 aa10.32□□□□□ -0.76
USP54-213ENST00000481991 RRP7AQ9Y3A4 280 aaKnown RBP10.32□□□□□ -0.76
USP54-213ENST00000481991 PDE4DIPQ5VU43 2346 aa10.32□□□□□ -0.76
USP54-213ENST00000481991 ADAMTSL1Q8N6G6 1762 aa10.31□□□□□ -0.76
USP54-213ENST00000481991 NPC1L1Q9UHC9 1359 aa10.31□□□□□ -0.76
USP54-213ENST00000481991 CC2D1BQ5T0F9 858 aaKnown RBP10.31□□□□□ -0.76
USP54-213ENST00000481991 DPP8Q6V1X1 898 aaPredicted RBP10.31□□□□□ -0.76
USP54-213ENST00000481991 KRT26Q7Z3Y9 468 aa10.31□□□□□ -0.76
USP54-213ENST00000481991 SUPT20HQ8NEM7 779 aa10.31□□□□□ -0.76
USP54-213ENST00000481991 TRPM4Q8TD43 1214 aa10.31□□□□□ -0.76
USP54-213ENST00000481991 ZC3H15Q8WU90 426 aaKnown RBP10.31□□□□□ -0.76
USP54-213ENST00000481991 DCPSQ96C86 337 aaKnown RBP10.31□□□□□ -0.76
USP54-213ENST00000481991 GBA2Q9HCG7 927 aaPredicted RBP10.31□□□□□ -0.76
USP54-213ENST00000481991 HPS5Q9UPZ3 1129 aa10.31□□□□□ -0.76
USP54-213ENST00000481991 MRC1P22897 1456 aa10.3□□□□□ -0.76
USP54-213ENST00000481991 TRPM7Q96QT4 1865 aa10.3□□□□□ -0.76
USP54-213ENST00000481991 SHTN1A0MZ66 631 aa10.3□□□□□ -0.76
USP54-213ENST00000481991 NBPF26B4DH59 902 aa10.3□□□□□ -0.76
USP54-213ENST00000481991 MYL6BP14649 208 aa10.3□□□□□ -0.76
USP54-213ENST00000481991 TBC1D10BQ4KMP7 808 aaPredicted RBP10.3□□□□□ -0.76
USP54-213ENST00000481991 NBPF10Q6P3W6 841 aaKnown RBP10.3□□□□□ -0.76
USP54-213ENST00000481991 SAMD7Q7Z3H4 446 aa10.3□□□□□ -0.76
USP54-213ENST00000481991 NLRP3Q96P20 1036 aa10.3□□□□□ -0.76
USP54-213ENST00000481991 CRAMP1Q96RY5 1269 aa10.3□□□□□ -0.76
USP54-213ENST00000481991 SAGE1Q9NXZ1 904 aa10.3□□□□□ -0.76
USP54-213ENST00000481991 TBC1D8O95759 1140 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 HSPA5P11021 654 aaKnown RBP10.29□□□□□ -0.76
USP54-213ENST00000481991 EIF4G2P78344 907 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP54-213ENST00000481991 CRY2Q49AN0 593 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 SUSD4Q5VX71 490 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 KIF6Q6ZMV9 814 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 MCM10Q7L590 875 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 MICALL2Q8IY33 904 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 MPNDQ8N594 471 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 CSRNP1Q96S65 589 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 ZBTB3Q9H5J0 574 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 MIS18AQ9NYP9 233 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 PGAP2Q9UHJ9 254 aa10.29□□□□□ -0.76
USP54-213ENST00000481991 ZBTB12Q9Y330 459 aaPredicted RBP10.29□□□□□ -0.76
USP54-213ENST00000481991 LTBP1Q14766 1721 aa10.28□□□□□ -0.76
USP54-213ENST00000481991 FAM155AB1AL88 458 aaPredicted RBP10.28□□□□□ -0.76
USP54-213ENST00000481991 ADM5C9JUS6 153 aa10.28□□□□□ -0.76
USP54-213ENST00000481991 HOXA10P31260 410 aaPredicted RBP10.28□□□□□ -0.76
USP54-213ENST00000481991 HABP4Q5JVS0 413 aaKnown RBP10.28□□□□□ -0.76
USP54-213ENST00000481991 VPS33BQ9H267 617 aa10.28□□□□□ -0.76
USP54-213ENST00000481991 RIMBP2O15034 1052 aa10.27□□□□□ -0.77
USP54-213ENST00000481991 DCTN1Q14203 1278 aa10.27□□□□□ -0.77
USP54-213ENST00000481991 PKN2Q16513 984 aaKnown RBP10.27□□□□□ -0.77
USP54-213ENST00000481991 PPP1R42Q7Z4L9 355 aa10.27□□□□□ -0.77
USP54-213ENST00000481991 PHACTR3Q96KR7 559 aa10.27□□□□□ -0.77
USP54-213ENST00000481991 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.27□□□□□ -0.77
USP54-213ENST00000481991 ATP6V0A2Q9Y487 856 aa10.27□□□□□ -0.77
USP54-213ENST00000481991 COL4A5P29400 1685 aa10.27□□□□□ -0.77
USP54-213ENST00000481991 ABCC12Q96J65 1359 aa10.26□□□□□ -0.77
USP54-213ENST00000481991 SCN7AQ01118 1682 aa10.26□□□□□ -0.77
USP54-213ENST00000481991 G3V3G9 751 aa10.26□□□□□ -0.77
USP54-213ENST00000481991 PRKAR2BP31323 418 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms