RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 TTC21AQ8NDW8 1320 aa22.11■■□□□ 1.13
CCDC88B-207ENST00000479965 HECW2Q9P2P5 1572 aa22.11■■□□□ 1.13
CCDC88B-207ENST00000479965 ERCC4Q92889 916 aaPredicted RBP22.11■■□□□ 1.13
CCDC88B-207ENST00000479965 GLRX3O76003 335 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-207ENST00000479965 CREB3L3Q68CJ9 461 aa22.1■■□□□ 1.13
CCDC88B-207ENST00000479965 NYAP1Q6ZVC0 841 aa22.1■■□□□ 1.13
CCDC88B-207ENST00000479965 NBPF7P0C2Y1 421 aaPredicted RBP22.1■■□□□ 1.13
CCDC88B-207ENST00000479965 PIK3C2BO00750 1634 aa22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 POLR3GO15318 223 aaPredicted RBP22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 EIF2S2P20042 333 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 CCAR2Q8N163 923 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 MAP3K19Q56UN5 1328 aa22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 H3BQV1 296 aa22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 BMS1Q14692 1282 aaKnown RBP22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 IFFO2Q5TF58 517 aa22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 BLOC1S2Q6QNY1 142 aa22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 FAM227BQ96M60 508 aa22.09■■□□□ 1.13
CCDC88B-207ENST00000479965 CPS1P31327 1500 aa22.08■■□□□ 1.13
CCDC88B-207ENST00000479965 LRRN4CLQ8ND94 238 aa22.08■■□□□ 1.13
CCDC88B-207ENST00000479965 SYT10Q6XYQ8 523 aa22.08■■□□□ 1.12
CCDC88B-207ENST00000479965 NEMFO60524 1076 aa22.07■■□□□ 1.12
CCDC88B-207ENST00000479965 JAK2O60674 1132 aa22.07■■□□□ 1.12
CCDC88B-207ENST00000479965 SNW1Q13573 536 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-207ENST00000479965 CLASRPQ8N2M8 674 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-207ENST00000479965 TM6SF1Q9BZW5 370 aa22.07■■□□□ 1.12
CCDC88B-207ENST00000479965 CLTCQ00610 1675 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-207ENST00000479965 HTATSF1O43719 755 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-207ENST00000479965 HNRNPH2P55795 449 aaKnown RBP22.07■■□□□ 1.12
CCDC88B-207ENST00000479965 IQCB1Q15051 598 aa22.07■■□□□ 1.12
CCDC88B-207ENST00000479965 CCZ1BP86790 482 aa22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 CCZ1P86791 482 aaPredicted RBP22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 NECTIN1Q15223 517 aa22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 DNAJC2Q99543 621 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 CHMP4AQ9BY43 222 aa22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 TRIM34Q9BYJ4 488 aa22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 CAPN2P17655 700 aa22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 HDGFL1Q5TGJ6 251 aa22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 IFIT2P09913 472 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 CDC25BP30305 580 aa22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 RBM43Q6ZSC3 357 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 IPO4Q8TEX9 1081 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 MRFAP1L1Q96HT8 127 aa22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 TAF6LQ9Y6J9 622 aa22.06■■□□□ 1.12
CCDC88B-207ENST00000479965 PSMA5P28066 241 aa22.05■■□□□ 1.12
CCDC88B-207ENST00000479965 ARHGAP29Q52LW3 1261 aa22.05■■□□□ 1.12
CCDC88B-207ENST00000479965 HOMER1Q86YM7 354 aa22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 CLCN6P51797 869 aa22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 AOPEPQ8N6M6 819 aa22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 BRF1Q92994 677 aa22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 FTOQ9C0B1 505 aaKnown RBP eCLIP22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 ERBB3P21860 1342 aa22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 SLC27A2O14975 620 aa22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 PPFIA3O75145 1194 aa22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 HSP90B1P14625 803 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 STX1AQ16623 288 aa22.04■■□□□ 1.12
CCDC88B-207ENST00000479965 NEK11Q8NG66 645 aa22.03■■□□□ 1.12
CCDC88B-207ENST00000479965 ALKQ9UM73 1620 aa22.03■■□□□ 1.12
CCDC88B-207ENST00000479965 POLA2Q14181 598 aa22.03■■□□□ 1.12
CCDC88B-207ENST00000479965 TAF7Q15545 349 aaPredicted RBP22.03■■□□□ 1.12
CCDC88B-207ENST00000479965 ECHDC1Q9NTX5 307 aa22.03■■□□□ 1.12
CCDC88B-207ENST00000479965 PA2G4Q9UQ80 394 aaKnown RBP22.03■■□□□ 1.12
CCDC88B-207ENST00000479965 NMIQ13287 307 aaPredicted RBP22.02■■□□□ 1.12
CCDC88B-207ENST00000479965 CCAR1Q8IX12 1150 aaKnown RBP22.02■■□□□ 1.12
CCDC88B-207ENST00000479965 FMNL2Q96PY5 1086 aa22.02■■□□□ 1.12
CCDC88B-207ENST00000479965 NPM1P06748 294 aaKnown RBP eCLIP22.02■■□□□ 1.12
CCDC88B-207ENST00000479965 CYP2C19P33261 490 aa22.02■■□□□ 1.12
CCDC88B-207ENST00000479965 FAM53CQ9NYF3 392 aa22.02■■□□□ 1.12
CCDC88B-207ENST00000479965 SMC2O95347 1197 aa22.02■■□□□ 1.11
CCDC88B-207ENST00000479965 SARM1Q6SZW1 724 aa22.02■■□□□ 1.11
CCDC88B-207ENST00000479965 SLFNL1Q499Z3 407 aa22.01■■□□□ 1.11
CCDC88B-207ENST00000479965 GPATCH3Q96I76 525 aa22.01■■□□□ 1.11
CCDC88B-207ENST00000479965 TUBGCP6Q96RT7 1819 aa22.01■■□□□ 1.11
CCDC88B-207ENST00000479965 CAVIN2O95810 425 aa22.01■■□□□ 1.11
CCDC88B-207ENST00000479965 ANXA1P04083 346 aa22.01■■□□□ 1.11
CCDC88B-207ENST00000479965 AACSQ86V21 672 aa22.01■■□□□ 1.11
CCDC88B-207ENST00000479965 FHOD1Q9Y613 1164 aa22.01■■□□□ 1.11
CCDC88B-207ENST00000479965 KINO60870 393 aaKnown RBP22■■□□□ 1.11
CCDC88B-207ENST00000479965 PNMA6AP0CW24 399 aaPredicted RBP22■■□□□ 1.11
CCDC88B-207ENST00000479965 ANKRD1Q15327 319 aa22■■□□□ 1.11
CCDC88B-207ENST00000479965 CCDC73Q6ZRK6 1079 aa22■■□□□ 1.11
CCDC88B-207ENST00000479965 ARHGEF10O15013 1369 aa22■■□□□ 1.11
CCDC88B-207ENST00000479965 HSP90AB4PQ58FF6 505 aa22■■□□□ 1.11
CCDC88B-207ENST00000479965 MYO5BQ9ULV0 1848 aa22■■□□□ 1.11
CCDC88B-207ENST00000479965 RNF20Q5VTR2 975 aa22■■□□□ 1.11
CCDC88B-207ENST00000479965 TTC41PQ6P2S7 1318 aa21.99■■□□□ 1.11
CCDC88B-207ENST00000479965 CFAP45Q9UL16 551 aa21.99■■□□□ 1.11
CCDC88B-207ENST00000479965 RPS6KB1P23443 525 aa21.99■■□□□ 1.11
CCDC88B-207ENST00000479965 TOB2Q14106 344 aaPredicted RBP21.99■■□□□ 1.11
CCDC88B-207ENST00000479965 TMCO3Q6UWJ1 677 aa21.99■■□□□ 1.11
CCDC88B-207ENST00000479965 TMC6Q7Z403 805 aa21.99■■□□□ 1.11
CCDC88B-207ENST00000479965 UBXN4Q92575 508 aa21.99■■□□□ 1.11
CCDC88B-207ENST00000479965 PI4KAP2A4QPH2 592 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 PDIA4P13667 645 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 H2AFXP16104 143 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 E4F1Q66K89 784 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 PI4KAP1Q8N8J0 262 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 MAP4K1Q92918 833 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 EVI5LQ96CN4 794 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 FSD1Q9BTV5 496 aa21.98■■□□□ 1.11
CCDC88B-207ENST00000479965 CCDC8Q9H0W5 538 aaPredicted RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms