RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 C7orf43Q8WVR3 580 aa13.19□□□□□ -0.3
GPNMB-211ENST00000479625 ABT1Q9ULW3 272 aaKnown RBP13.19□□□□□ -0.3
GPNMB-211ENST00000479625 PCDHB13Q9Y5F0 798 aa13.19□□□□□ -0.3
GPNMB-211ENST00000479625 COL3A1P02461 1466 aaPredicted RBP13.18□□□□□ -0.3
GPNMB-211ENST00000479625 CCDC85CA6NKD9 419 aa13.18□□□□□ -0.3
GPNMB-211ENST00000479625 CNTROBQ8N137 903 aa13.18□□□□□ -0.3
GPNMB-211ENST00000479625 SNED1Q8TER0 1413 aa13.18□□□□□ -0.3
GPNMB-211ENST00000479625 CASP8AP2Q9UKL3 1982 aa13.18□□□□□ -0.3
GPNMB-211ENST00000479625 MLLT1Q03111 559 aaPredicted RBP13.17□□□□□ -0.3
GPNMB-211ENST00000479625 GRM1Q13255 1194 aa13.17□□□□□ -0.3
GPNMB-211ENST00000479625 ZNF790Q6PG37 636 aa13.17□□□□□ -0.3
GPNMB-211ENST00000479625 DZIP3Q86Y13 1208 aaKnown RBP13.17□□□□□ -0.3
GPNMB-211ENST00000479625 TSKSQ9UJT2 592 aa13.17□□□□□ -0.3
GPNMB-211ENST00000479625 NUP98P52948 1817 aa13.17□□□□□ -0.3
GPNMB-211ENST00000479625 HSPA5P11021 654 aaKnown RBP13.16□□□□□ -0.3
GPNMB-211ENST00000479625 MAP2K1Q02750 393 aaPredicted RBP13.16□□□□□ -0.3
GPNMB-211ENST00000479625 PAXIP1Q6ZW49 1069 aaPredicted RBP13.16□□□□□ -0.3
GPNMB-211ENST00000479625 KCNQ3O43525 872 aa13.15□□□□□ -0.3
GPNMB-211ENST00000479625 NPR1P16066 1061 aa13.15□□□□□ -0.3
GPNMB-211ENST00000479625 IARSP41252 1262 aaKnown RBP13.15□□□□□ -0.3
GPNMB-211ENST00000479625 TEFQ10587 303 aa13.15□□□□□ -0.3
GPNMB-211ENST00000479625 CYP4F22Q6NT55 531 aa13.15□□□□□ -0.3
GPNMB-211ENST00000479625 PNMA8AQ86V59 439 aaPredicted RBP13.15□□□□□ -0.3
GPNMB-211ENST00000479625 NBPF5PQ86XG9 351 aaPredicted RBP13.15□□□□□ -0.3
GPNMB-211ENST00000479625 IL17REQ8NFR9 667 aa13.15□□□□□ -0.3
GPNMB-211ENST00000479625 CAPNS2Q96L46 248 aa13.15□□□□□ -0.3
GPNMB-211ENST00000479625 DDX21Q9NR30 783 aaKnown RBP eCLIP13.15□□□□□ -0.3
GPNMB-211ENST00000479625 PRAMEF22A3QJZ6 481 aa13.14□□□□□ -0.31
GPNMB-211ENST00000479625 FAM177BA6PVY3 158 aa13.14□□□□□ -0.31
GPNMB-211ENST00000479625 FZD9O00144 591 aa13.14□□□□□ -0.31
GPNMB-211ENST00000479625 PYGBP11216 843 aa13.14□□□□□ -0.31
GPNMB-211ENST00000479625 ATN1P54259 1190 aaPredicted RBP13.14□□□□□ -0.31
GPNMB-211ENST00000479625 AMER1Q5JTC6 1135 aaPredicted RBP13.14□□□□□ -0.31
GPNMB-211ENST00000479625 SLC51AQ86UW1 340 aa13.14□□□□□ -0.31
GPNMB-211ENST00000479625 FMNL2Q96PY5 1086 aa13.14□□□□□ -0.31
GPNMB-211ENST00000479625 TEX13AQ9BXU3 409 aaPredicted RBP13.14□□□□□ -0.31
GPNMB-211ENST00000479625 BMP2KQ9NSY1 1161 aaPredicted RBP13.14□□□□□ -0.31
GPNMB-211ENST00000479625 KNSTRNQ9Y448 316 aa13.14□□□□□ -0.31
GPNMB-211ENST00000479625 DIAPH1O60610 1272 aaKnown RBP13.13□□□□□ -0.31
GPNMB-211ENST00000479625 NPM2Q86SE8 214 aaKnown RBP13.13□□□□□ -0.31
GPNMB-211ENST00000479625 GPC2Q8N158 579 aa13.13□□□□□ -0.31
GPNMB-211ENST00000479625 SYNE4Q8N205 404 aa13.13□□□□□ -0.31
GPNMB-211ENST00000479625 METRNQ9UJH8 293 aa13.13□□□□□ -0.31
GPNMB-211ENST00000479625 GJA3Q9Y6H8 435 aa13.13□□□□□ -0.31
GPNMB-211ENST00000479625 ABCC12Q96J65 1359 aa13.12□□□□□ -0.31
GPNMB-211ENST00000479625 GNAT3A8MTJ3 354 aa13.12□□□□□ -0.31
GPNMB-211ENST00000479625 TRAF5O00463 557 aa13.12□□□□□ -0.31
GPNMB-211ENST00000479625 AOC2O75106 756 aa13.12□□□□□ -0.31
GPNMB-211ENST00000479625 RGS19P49795 217 aa13.12□□□□□ -0.31
GPNMB-211ENST00000479625 CFAP44Q96MT7 982 aa13.12□□□□□ -0.31
GPNMB-211ENST00000479625 LAMB2P55268 1798 aa13.12□□□□□ -0.31
GPNMB-211ENST00000479625 CEMIPQ8WUJ3 1361 aa13.11□□□□□ -0.31
GPNMB-211ENST00000479625 KLRG2A4D1S0 409 aaPredicted RBP13.11□□□□□ -0.31
GPNMB-211ENST00000479625 SCNN1DP51172 638 aa13.11□□□□□ -0.31
GPNMB-211ENST00000479625 EIF4G2P78344 907 aaKnown RBP eCLIP13.11□□□□□ -0.31
GPNMB-211ENST00000479625 IFNLR1Q8IU57 520 aaPredicted RBP13.11□□□□□ -0.31
GPNMB-211ENST00000479625 RTKN2Q8IZC4 609 aa13.11□□□□□ -0.31
GPNMB-211ENST00000479625 GPR101Q96P66 508 aaPredicted RBP13.11□□□□□ -0.31
GPNMB-211ENST00000479625 USP16Q9Y5T5 823 aa13.11□□□□□ -0.31
GPNMB-211ENST00000479625 KDM3BQ7LBC6 1761 aa13.1□□□□□ -0.31
GPNMB-211ENST00000479625 TIE1P35590 1138 aa13.1□□□□□ -0.31
GPNMB-211ENST00000479625 EPS15P42566 896 aa13.1□□□□□ -0.31
GPNMB-211ENST00000479625 CST9Q5W186 159 aa13.1□□□□□ -0.31
GPNMB-211ENST00000479625 IFNL1Q8IU54 200 aa13.1□□□□□ -0.31
GPNMB-211ENST00000479625 BEGAINQ9BUH8 593 aa13.1□□□□□ -0.31
GPNMB-211ENST00000479625 NIP7Q9Y221 180 aaKnown RBP eCLIP13.1□□□□□ -0.31
GPNMB-211ENST00000479625 BTBD11A6QL63 1104 aa13.09□□□□□ -0.31
GPNMB-211ENST00000479625 LMOD1P29536 600 aaPredicted RBP13.09□□□□□ -0.31
GPNMB-211ENST00000479625 ECE1P42892 770 aa13.09□□□□□ -0.31
GPNMB-211ENST00000479625 GAS2L2Q8NHY3 880 aa13.09□□□□□ -0.31
GPNMB-211ENST00000479625 SLC39A7Q92504 469 aa13.09□□□□□ -0.31
GPNMB-211ENST00000479625 MCOLN1Q9GZU1 580 aa13.09□□□□□ -0.31
GPNMB-211ENST00000479625 ZNF652Q9Y2D9 606 aa13.09□□□□□ -0.31
GPNMB-211ENST00000479625 TLL2Q9Y6L7 1015 aa13.09□□□□□ -0.31
GPNMB-211ENST00000479625 DLG5Q8TDM6 1919 aa13.09□□□□□ -0.31
GPNMB-211ENST00000479625 U2SURPO15042 1029 aaKnown RBP13.08□□□□□ -0.32
GPNMB-211ENST00000479625 EIF6P56537 245 aaKnown RBP13.08□□□□□ -0.32
GPNMB-211ENST00000479625 CLEC4GQ6UXB4 293 aa13.08□□□□□ -0.32
GPNMB-211ENST00000479625 JDP2Q8WYK2 163 aa13.08□□□□□ -0.32
GPNMB-211ENST00000479625 PSMD1Q99460 953 aa13.08□□□□□ -0.32
GPNMB-211ENST00000479625 PCDH10Q9P2E7 1040 aa13.08□□□□□ -0.32
GPNMB-211ENST00000479625 RIC1Q4ADV7 1423 aa13.07□□□□□ -0.32
GPNMB-211ENST00000479625 NBPF26B4DH59 902 aa13.07□□□□□ -0.32
GPNMB-211ENST00000479625 HLFQ16534 295 aa13.07□□□□□ -0.32
GPNMB-211ENST00000479625 CC2D1BQ5T0F9 858 aaKnown RBP13.07□□□□□ -0.32
GPNMB-211ENST00000479625 NBPF10Q6P3W6 841 aaKnown RBP13.07□□□□□ -0.32
GPNMB-211ENST00000479625 TPTE2Q6XPS3 522 aa13.07□□□□□ -0.32
GPNMB-211ENST00000479625 NBPF15Q8N660 670 aa13.07□□□□□ -0.32
GPNMB-211ENST00000479625 PDE4DIPQ5VU43 2346 aa13.07□□□□□ -0.32
GPNMB-211ENST00000479625 TTLL13PA6NNM8 815 aa13.06□□□□□ -0.32
GPNMB-211ENST00000479625 ALDH1B1P30837 517 aa13.06□□□□□ -0.32
GPNMB-211ENST00000479625 GSE1Q14687 1217 aa13.06□□□□□ -0.32
GPNMB-211ENST00000479625 NUTM1Q86Y26 1132 aa13.06□□□□□ -0.32
GPNMB-211ENST00000479625 TIMELESSQ9UNS1 1208 aa13.06□□□□□ -0.32
GPNMB-211ENST00000479625 ANKRD36CQ5JPF3 1778 aa13.06□□□□□ -0.32
GPNMB-211ENST00000479625 TAF1P21675 1872 aa13.06□□□□□ -0.32
GPNMB-211ENST00000479625 CNGB1Q14028 1251 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-211ENST00000479625 USP50Q70EL3 339 aaPredicted RBP13.05□□□□□ -0.32
GPNMB-211ENST00000479625 LARGE2Q8N3Y3 721 aa13.05□□□□□ -0.32
GPNMB-211ENST00000479625 SPOCK2Q92563 424 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms