RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 BRD4O60885 1362 aaPredicted RBP8.46□□□□□ -1.06
SF3B1-209ENST00000479532 NUTM2BA6NNL0 878 aaPredicted RBP8.45□□□□□ -1.06
SF3B1-209ENST00000479532 NUTM2EB1AL46 878 aaPredicted RBP8.45□□□□□ -1.06
SF3B1-209ENST00000479532 FDX1P10109 184 aa8.45□□□□□ -1.06
SF3B1-209ENST00000479532 RTL5Q5HYW3 569 aaPredicted RBP8.45□□□□□ -1.06
SF3B1-209ENST00000479532 KANK3Q6NY19 840 aa8.45□□□□□ -1.06
SF3B1-209ENST00000479532 KRT28Q7Z3Y7 464 aa8.45□□□□□ -1.06
SF3B1-209ENST00000479532 NUTM2AQ8IVF1 878 aaPredicted RBP8.45□□□□□ -1.06
SF3B1-209ENST00000479532 LRRC59Q96AG4 307 aaKnown RBP8.45□□□□□ -1.06
SF3B1-209ENST00000479532 ARID3AQ99856 593 aa8.45□□□□□ -1.06
SF3B1-209ENST00000479532 MON2Q7Z3U7 1717 aa8.45□□□□□ -1.06
SF3B1-209ENST00000479532 KTN1Q86UP2 1357 aaKnown RBP8.45□□□□□ -1.06
SF3B1-209ENST00000479532 ANKRD36BQ8N2N9 1353 aa8.45□□□□□ -1.06
SF3B1-209ENST00000479532 COL16A1Q07092 1604 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-209ENST00000479532 GUCA2AQ02747 115 aa8.44□□□□□ -1.06
SF3B1-209ENST00000479532 PTCRAQ6ISU1 281 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-209ENST00000479532 HLA-CQ95604 372 aa8.44□□□□□ -1.06
SF3B1-209ENST00000479532 NUDT12Q9BQG2 462 aa8.44□□□□□ -1.06
SF3B1-209ENST00000479532 SOS2Q07890 1332 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-209ENST00000479532 KIF7Q2M1P5 1343 aa8.44□□□□□ -1.06
SF3B1-209ENST00000479532 SBNO1A3KN83 1393 aa8.44□□□□□ -1.06
SF3B1-209ENST00000479532 CCDC7Q96M83 1385 aa8.44□□□□□ -1.06
SF3B1-209ENST00000479532 PXDNQ92626 1479 aa8.44□□□□□ -1.06
SF3B1-209ENST00000479532 AP1G2O75843 785 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 JUNDP17535 347 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 HSPA1LP34931 641 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 SH3BP2P78314 561 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 XPCQ01831 940 aaPredicted RBP8.43□□□□□ -1.06
SF3B1-209ENST00000479532 C6orf118Q5T5N4 469 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 PRPF38BQ5VTL8 546 aaKnown RBP8.43□□□□□ -1.06
SF3B1-209ENST00000479532 MTMR14Q8NCE2 650 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 DDX17Q92841 729 aaKnown RBP8.43□□□□□ -1.06
SF3B1-209ENST00000479532 BCL11AQ9H165 835 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 SLC12A5Q9H2X9 1139 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 ZBTB3Q9H5J0 574 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 COG6Q9Y2V7 657 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 ARHGEF10O15013 1369 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 USP6P35125 1406 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 CPSF1Q10570 1443 aaKnown RBP8.43□□□□□ -1.06
SF3B1-209ENST00000479532 TNS3Q68CZ2 1445 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 EDC4Q6P2E9 1401 aaKnown RBP8.43□□□□□ -1.06
SF3B1-209ENST00000479532 SHPRHQ149N8 1683 aa8.43□□□□□ -1.06
SF3B1-209ENST00000479532 TRPM3Q9HCF6 1732 aaPredicted RBP8.43□□□□□ -1.06
SF3B1-209ENST00000479532 ADH1CP00326 375 aa8.42□□□□□ -1.06
SF3B1-209ENST00000479532 KRTAP4-8Q9BYQ9 185 aa8.42□□□□□ -1.06
SF3B1-209ENST00000479532 PCDHGC3Q9UN70 934 aa8.42□□□□□ -1.06
SF3B1-209ENST00000479532 TLL2Q9Y6L7 1015 aa8.42□□□□□ -1.06
SF3B1-209ENST00000479532 TTC21AQ8NDW8 1320 aa8.42□□□□□ -1.06
SF3B1-209ENST00000479532 A0A1W2PP64 1363 aa8.42□□□□□ -1.06
SF3B1-209ENST00000479532 JCADQ9P266 1359 aa8.42□□□□□ -1.06
SF3B1-209ENST00000479532 KIF20BQ96Q89 1820 aa8.41□□□□□ -1.06
SF3B1-209ENST00000479532 ALS2Q96Q42 1657 aa8.41□□□□□ -1.06
SF3B1-209ENST00000479532 NRKQ7Z2Y5 1582 aa8.41□□□□□ -1.06
SF3B1-209ENST00000479532 SPATA31A3Q5VYP0 1347 aa8.41□□□□□ -1.06
SF3B1-209ENST00000479532 WASHC2AQ641Q2 1341 aa8.41□□□□□ -1.06
SF3B1-209ENST00000479532 ABTB2Q8N961 1025 aa8.41□□□□□ -1.06
SF3B1-209ENST00000479532 CD163L1Q9NR16 1453 aa8.4□□□□□ -1.06
SF3B1-209ENST00000479532 TTC21BQ7Z4L5 1316 aa8.4□□□□□ -1.06
SF3B1-209ENST00000479532 ADAM23O75077 832 aa8.4□□□□□ -1.06
SF3B1-209ENST00000479532 UPP2O95045 317 aa8.4□□□□□ -1.06
SF3B1-209ENST00000479532 USP17L8P0C7I0 530 aa8.4□□□□□ -1.06
SF3B1-209ENST00000479532 TIMP2P16035 220 aa8.4□□□□□ -1.06
SF3B1-209ENST00000479532 KRT76Q01546 638 aa8.4□□□□□ -1.06
SF3B1-209ENST00000479532 ZNF385CQ66K41 422 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-209ENST00000479532 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.4□□□□□ -1.06
SF3B1-209ENST00000479532 FNBP4Q8N3X1 1017 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-209ENST00000479532 SCARF2Q96GP6 870 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-209ENST00000479532 PANK3Q9H999 370 aa8.4□□□□□ -1.06
SF3B1-209ENST00000479532 COL22A1Q8NFW1 1626 aaPredicted RBP8.4□□□□□ -1.07
SF3B1-209ENST00000479532 NSD3Q9BZ95 1437 aa8.39□□□□□ -1.07
SF3B1-209ENST00000479532 CGNL1Q0VF96 1302 aa8.39□□□□□ -1.07
SF3B1-209ENST00000479532 SPATA31A6Q5VVP1 1343 aa8.39□□□□□ -1.07
SF3B1-209ENST00000479532 NLRP13Q86W25 1043 aa8.39□□□□□ -1.07
SF3B1-209ENST00000479532 GPR161Q8N6U8 529 aaKnown RBP8.39□□□□□ -1.07
SF3B1-209ENST00000479532 COL25A1Q9BXS0 654 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-209ENST00000479532 KNSTRNQ9Y448 316 aa8.39□□□□□ -1.07
SF3B1-209ENST00000479532 PNPLA6Q8IY17 1366 aa8.38□□□□□ -1.07
SF3B1-209ENST00000479532 PIK3C2AO00443 1686 aa8.38□□□□□ -1.07
SF3B1-209ENST00000479532 MSTNO14793 375 aa8.38□□□□□ -1.07
SF3B1-209ENST00000479532 BMP2P12643 396 aa8.38□□□□□ -1.07
SF3B1-209ENST00000479532 MTMR2Q13614 643 aa8.38□□□□□ -1.07
SF3B1-209ENST00000479532 GDPD2Q9HCC8 539 aa8.38□□□□□ -1.07
SF3B1-209ENST00000479532 MED1Q15648 1581 aaPredicted RBP8.38□□□□□ -1.07
SF3B1-209ENST00000479532 SSH2Q76I76 1423 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 NSD2O96028 1365 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 PHRF1Q9P1Y6 1649 aaKnown RBP8.37□□□□□ -1.07
SF3B1-209ENST00000479532 SOCS7O14512 581 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 VARSP26640 1264 aaKnown RBP8.37□□□□□ -1.07
SF3B1-209ENST00000479532 MEX3CQ5U5Q3 659 aaKnown RBP8.37□□□□□ -1.07
SF3B1-209ENST00000479532 CCDC82Q8N4S0 544 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 KCNH5Q8NCM2 988 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 COG3Q96JB2 828 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 PSMG3-AS1Q96PY0 264 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 ABCA3Q99758 1704 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 ANKRD26Q9UPS8 1709 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 USP54Q70EL1 1684 aa8.37□□□□□ -1.07
SF3B1-209ENST00000479532 C6orf229H3BNL8 230 aa8.36□□□□□ -1.07
SF3B1-209ENST00000479532 LINC01559Q495D7 138 aa8.36□□□□□ -1.07
SF3B1-209ENST00000479532 NUTM2GQ5VZR2 741 aa8.36□□□□□ -1.07
SF3B1-209ENST00000479532 BAP1Q92560 729 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms