RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 HPS5Q9UPZ3 1129 aa13.22□□□□□ -0.29
SMARCB1-206ENST00000477836 IL13P35225 146 aa13.21□□□□□ -0.29
SMARCB1-206ENST00000477836 NIM1KQ8IY84 436 aa13.21□□□□□ -0.29
SMARCB1-206ENST00000477836 RNF186Q9NXI6 227 aa13.21□□□□□ -0.29
SMARCB1-206ENST00000477836 FAM155AB1AL88 458 aaPredicted RBP13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 PIP4K2AP48426 406 aaPredicted RBP13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 KIF23Q02241 960 aaPredicted RBP13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 MTHFSDQ2M296 383 aaKnown RBP13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 CC2D2BQ6DHV5 1058 aa13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 ZNF790Q6PG37 636 aa13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 CLEC4GQ6UXB4 293 aa13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 CDC37L1Q7L3B6 337 aa13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 POLR3GLQ9BT43 218 aa13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 PGAP2Q9UHJ9 254 aa13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 NIP7Q9Y221 180 aaKnown RBP eCLIP13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 ZNF652Q9Y2D9 606 aa13.2□□□□□ -0.3
SMARCB1-206ENST00000477836 HMOX1P09601 288 aa13.19□□□□□ -0.3
SMARCB1-206ENST00000477836 GTF2E1P29083 439 aaPredicted RBP13.19□□□□□ -0.3
SMARCB1-206ENST00000477836 RGMBQ6NW40 437 aa13.19□□□□□ -0.3
SMARCB1-206ENST00000477836 AKAP11Q9UKA4 1901 aa13.18□□□□□ -0.3
SMARCB1-206ENST00000477836 TCERG1O14776 1098 aaKnown RBP13.18□□□□□ -0.3
SMARCB1-206ENST00000477836 GMPSP49915 693 aaPredicted RBP13.18□□□□□ -0.3
SMARCB1-206ENST00000477836 DLK2Q6UY11 383 aa13.18□□□□□ -0.3
SMARCB1-206ENST00000477836 ZC3H15Q8WU90 426 aaKnown RBP13.18□□□□□ -0.3
SMARCB1-206ENST00000477836 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
SMARCB1-206ENST00000477836 CENPFP49454 3210 aa13.18□□□□□ -0.3
SMARCB1-206ENST00000477836 PPIP5K2O43314 1243 aa13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 ZNF157P51786 506 aaPredicted RBP13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 HIRAP54198 1017 aaPredicted RBP13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 CXCL9Q07325 125 aa13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 TEFQ10587 303 aa13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 AOC3Q16853 763 aa13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 USP48Q86UV5 1035 aa13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 SLC51AQ86UW1 340 aa13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 CCDC102AQ96A19 550 aa13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 NPC1L1Q9UHC9 1359 aa13.17□□□□□ -0.3
SMARCB1-206ENST00000477836 CRY2Q49AN0 593 aa13.16□□□□□ -0.3
SMARCB1-206ENST00000477836 GRIPAP1Q4V328 841 aa13.16□□□□□ -0.3
SMARCB1-206ENST00000477836 MORC1Q86VD1 984 aa13.16□□□□□ -0.3
SMARCB1-206ENST00000477836 TRPM4Q8TD43 1214 aa13.16□□□□□ -0.3
SMARCB1-206ENST00000477836 RPGRQ92834 1020 aaKnown RBP13.16□□□□□ -0.3
SMARCB1-206ENST00000477836 BCL2L13Q9BXK5 485 aa13.16□□□□□ -0.3
SMARCB1-206ENST00000477836 SZT2Q5T011 3432 aa13.16□□□□□ -0.3
SMARCB1-206ENST00000477836 FXR1P51114 621 aaKnown RBP eCLIP13.15□□□□□ -0.3
SMARCB1-206ENST00000477836 PKN2Q16513 984 aaKnown RBP13.15□□□□□ -0.3
SMARCB1-206ENST00000477836 CSRNP1Q96S65 589 aa13.15□□□□□ -0.3
SMARCB1-206ENST00000477836 PPEF1O14829 653 aaPredicted RBP13.14□□□□□ -0.31
SMARCB1-206ENST00000477836 C2orf69Q8N8R5 385 aa13.14□□□□□ -0.31
SMARCB1-206ENST00000477836 GBA2Q9HCG7 927 aaPredicted RBP13.14□□□□□ -0.31
SMARCB1-206ENST00000477836 HDAC9Q9UKV0 1011 aa13.14□□□□□ -0.31
SMARCB1-206ENST00000477836 ZNRF3Q9ULT6 936 aa13.14□□□□□ -0.31
SMARCB1-206ENST00000477836 USP16Q9Y5T5 823 aa13.14□□□□□ -0.31
SMARCB1-206ENST00000477836 A0A0C4DFX4 3053 aa13.14□□□□□ -0.31
SMARCB1-206ENST00000477836 ABCC12Q96J65 1359 aa13.14□□□□□ -0.31
SMARCB1-206ENST00000477836 HTTP42858 3142 aa13.13□□□□□ -0.31
SMARCB1-206ENST00000477836 BRCA2P51587 3418 aa13.13□□□□□ -0.31
SMARCB1-206ENST00000477836 KCNQ3O43525 872 aa13.13□□□□□ -0.31
SMARCB1-206ENST00000477836 NUTM1Q86Y26 1132 aa13.13□□□□□ -0.31
SMARCB1-206ENST00000477836 IL17REQ8NFR9 667 aa13.13□□□□□ -0.31
SMARCB1-206ENST00000477836 TIMELESSQ9UNS1 1208 aa13.13□□□□□ -0.31
SMARCB1-206ENST00000477836 CDHR2Q9BYE9 1310 aa13.13□□□□□ -0.31
SMARCB1-206ENST00000477836 SHTN1A0MZ66 631 aa13.12□□□□□ -0.31
SMARCB1-206ENST00000477836 PRAMEF22A3QJZ6 481 aa13.12□□□□□ -0.31
SMARCB1-206ENST00000477836 RAD17O75943 681 aa13.12□□□□□ -0.31
SMARCB1-206ENST00000477836 SLC10A3P09131 477 aa13.12□□□□□ -0.31
SMARCB1-206ENST00000477836 HOXA10P31260 410 aaPredicted RBP13.12□□□□□ -0.31
SMARCB1-206ENST00000477836 HLFQ16534 295 aa13.12□□□□□ -0.31
SMARCB1-206ENST00000477836 PANK3Q9H999 370 aa13.12□□□□□ -0.31
SMARCB1-206ENST00000477836 CNOT7Q9UIV1 285 aaKnown RBP13.12□□□□□ -0.31
SMARCB1-206ENST00000477836 SIPA1L3O60292 1781 aaPredicted RBP13.12□□□□□ -0.31
SMARCB1-206ENST00000477836 H7C1D1 291 aa13.11□□□□□ -0.31
SMARCB1-206ENST00000477836 KRT26Q7Z3Y9 468 aa13.11□□□□□ -0.31
SMARCB1-206ENST00000477836 RBM17Q96I25 401 aaKnown RBP13.11□□□□□ -0.31
SMARCB1-206ENST00000477836 NYXQ9GZU5 481 aa13.11□□□□□ -0.31
SMARCB1-206ENST00000477836 TMX4Q9H1E5 349 aaPredicted RBP13.11□□□□□ -0.31
SMARCB1-206ENST00000477836 VPS33BQ9H267 617 aa13.11□□□□□ -0.31
SMARCB1-206ENST00000477836 BTBD11A6QL63 1104 aa13.1□□□□□ -0.31
SMARCB1-206ENST00000477836 GNAT3A8MTJ3 354 aa13.1□□□□□ -0.31
SMARCB1-206ENST00000477836 TNIP1Q15025 636 aa13.1□□□□□ -0.31
SMARCB1-206ENST00000477836 ZNF296Q8WUU4 475 aaPredicted RBP13.1□□□□□ -0.31
SMARCB1-206ENST00000477836 KIF7Q2M1P5 1343 aa13.1□□□□□ -0.31
SMARCB1-206ENST00000477836 ADM5C9JUS6 153 aa13.09□□□□□ -0.31
SMARCB1-206ENST00000477836 DLL1O00548 723 aa13.09□□□□□ -0.31
SMARCB1-206ENST00000477836 RGL2O15211 777 aa13.09□□□□□ -0.31
SMARCB1-206ENST00000477836 FBXO46Q6PJ61 603 aaPredicted RBP13.09□□□□□ -0.31
SMARCB1-206ENST00000477836 MICALL2Q8IY33 904 aa13.09□□□□□ -0.31
SMARCB1-206ENST00000477836 REM2Q8IYK8 340 aaPredicted RBP13.09□□□□□ -0.31
SMARCB1-206ENST00000477836 SUPT20HQ8NEM7 779 aa13.09□□□□□ -0.31
SMARCB1-206ENST00000477836 CRAMP1Q96RY5 1269 aa13.09□□□□□ -0.31
SMARCB1-206ENST00000477836 RIC1Q4ADV7 1423 aa13.08□□□□□ -0.32
SMARCB1-206ENST00000477836 NBPF26B4DH59 902 aa13.08□□□□□ -0.32
SMARCB1-206ENST00000477836 TBC1D8O95759 1140 aa13.08□□□□□ -0.32
SMARCB1-206ENST00000477836 NBPF10Q6P3W6 841 aaKnown RBP13.08□□□□□ -0.32
SMARCB1-206ENST00000477836 SAMD7Q7Z3H4 446 aa13.08□□□□□ -0.32
SMARCB1-206ENST00000477836 POLR2AP24928 1970 aaKnown RBP13.07□□□□□ -0.32
SMARCB1-206ENST00000477836 TBC1D10BQ4KMP7 808 aaPredicted RBP13.07□□□□□ -0.32
SMARCB1-206ENST00000477836 DCPSQ96C86 337 aaKnown RBP13.07□□□□□ -0.32
SMARCB1-206ENST00000477836 ZBTB12Q9Y330 459 aaPredicted RBP13.07□□□□□ -0.32
SMARCB1-206ENST00000477836 ATP6V0A2Q9Y487 856 aa13.07□□□□□ -0.32
SMARCB1-206ENST00000477836 COL6A3P12111 3177 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms