RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 CAMTA1Q9Y6Y1 1673 aa21.65■■□□□ 1.06
CCM2-209ENST00000477605 MAP4K1Q92918 833 aa21.65■■□□□ 1.06
CCM2-209ENST00000477605 ALDH8A1Q9H2A2 487 aaPredicted RBP21.65■■□□□ 1.06
CCM2-209ENST00000477605 PXDNQ92626 1479 aa21.64■■□□□ 1.06
CCM2-209ENST00000477605 PROSER3Q2NL68 480 aa21.64■■□□□ 1.05
CCM2-209ENST00000477605 PRPF40BQ6NWY9 871 aaKnown RBP21.64■■□□□ 1.05
CCM2-209ENST00000477605 C1orf167Q5SNV9 1468 aa21.64■■□□□ 1.05
CCM2-209ENST00000477605 ZBTB7CA1YPR0 619 aa21.64■■□□□ 1.05
CCM2-209ENST00000477605 GJB2P29033 226 aa21.63■■□□□ 1.05
CCM2-209ENST00000477605 SUCLG2Q96I99 432 aa21.63■■□□□ 1.05
CCM2-209ENST00000477605 MTMR6Q9Y217 621 aa21.63■■□□□ 1.05
CCM2-209ENST00000477605 ANKRD1Q15327 319 aa21.62■■□□□ 1.05
CCM2-209ENST00000477605 CWF19L2Q2TBE0 894 aaKnown RBP21.62■■□□□ 1.05
CCM2-209ENST00000477605 LARP1Q6PKG0 1096 aaKnown RBP21.62■■□□□ 1.05
CCM2-209ENST00000477605 ADAMTS7Q9UKP4 1686 aa21.62■■□□□ 1.05
CCM2-209ENST00000477605 PA2G4Q9UQ80 394 aaKnown RBP21.62■■□□□ 1.05
CCM2-209ENST00000477605 JCADQ9P266 1359 aa21.62■■□□□ 1.05
CCM2-209ENST00000477605 SASH1O94885 1247 aa21.62■■□□□ 1.05
CCM2-209ENST00000477605 FOXD4L6Q3SYB3 417 aaPredicted RBP21.62■■□□□ 1.05
CCM2-209ENST00000477605 RNF20Q5VTR2 975 aa21.62■■□□□ 1.05
CCM2-209ENST00000477605 CREB3L3Q68CJ9 461 aa21.62■■□□□ 1.05
CCM2-209ENST00000477605 FOXD4L3Q6VB84 417 aaPredicted RBP21.62■■□□□ 1.05
CCM2-209ENST00000477605 KAZALD1Q96I82 304 aa21.62■■□□□ 1.05
CCM2-209ENST00000477605 RBM8AQ9Y5S9 174 aaKnown RBP21.62■■□□□ 1.05
CCM2-209ENST00000477605 ADCK5Q3MIX3 580 aa21.61■■□□□ 1.05
CCM2-209ENST00000477605 GLIPR1L2Q4G1C9 344 aa21.61■■□□□ 1.05
CCM2-209ENST00000477605 CCDC83Q8IWF9 413 aa21.61■■□□□ 1.05
CCM2-209ENST00000477605 PTMAP06454 111 aaKnown RBP21.6■■□□□ 1.05
CCM2-209ENST00000477605 EAF2Q96CJ1 260 aaPredicted RBP21.6■■□□□ 1.05
CCM2-209ENST00000477605 BICC1Q9H694 974 aaKnown RBP21.6■■□□□ 1.05
CCM2-209ENST00000477605 LARGE1O95461 756 aa21.6■■□□□ 1.05
CCM2-209ENST00000477605 PDCP20941 246 aa21.6■■□□□ 1.05
CCM2-209ENST00000477605 PDIA6Q15084 440 aa21.6■■□□□ 1.05
CCM2-209ENST00000477605 NHSL1Q5SYE7 1610 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 NEXNQ0ZGT2 675 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 TSGA10IPQ3SY00 556 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 RGPD2P0DJD1 1756 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 PLEKHG2Q9H7P9 1386 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 CPA1P15085 419 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 KCNJ4P48050 445 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 NMIQ13287 307 aaPredicted RBP21.59■■□□□ 1.05
CCM2-209ENST00000477605 DDX17Q92841 729 aaKnown RBP21.59■■□□□ 1.05
CCM2-209ENST00000477605 ORAI2Q96SN7 254 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 HMG20BQ9P0W2 317 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 MRC1P22897 1456 aa21.59■■□□□ 1.05
CCM2-209ENST00000477605 SIPA1L3O60292 1781 aaPredicted RBP21.58■■□□□ 1.04
CCM2-209ENST00000477605 SLC27A2O14975 620 aa21.57■■□□□ 1.04
CCM2-209ENST00000477605 XPCQ01831 940 aaPredicted RBP21.57■■□□□ 1.04
CCM2-209ENST00000477605 ME3Q16798 604 aa21.57■■□□□ 1.04
CCM2-209ENST00000477605 RIC3Q7Z5B4 369 aa21.57■■□□□ 1.04
CCM2-209ENST00000477605 KIAA2012Q0VF49 1180 aa21.57■■□□□ 1.04
CCM2-209ENST00000477605 FIBPO43427 364 aa21.56■■□□□ 1.04
CCM2-209ENST00000477605 IGKV5-2P06315 115 aa21.56■■□□□ 1.04
CCM2-209ENST00000477605 ZNF790Q6PG37 636 aa21.56■■□□□ 1.04
CCM2-209ENST00000477605 LARP6Q9BRS8 491 aaKnown RBP21.56■■□□□ 1.04
CCM2-209ENST00000477605 FUCA2Q9BTY2 467 aa21.56■■□□□ 1.04
CCM2-209ENST00000477605 R3HCC1Q9Y3T6 440 aaKnown RBP21.56■■□□□ 1.04
CCM2-209ENST00000477605 MED23Q9ULK4 1368 aa21.56■■□□□ 1.04
CCM2-209ENST00000477605 PRAMEF22A3QJZ6 481 aa21.56■■□□□ 1.04
CCM2-209ENST00000477605 FAM227BQ96M60 508 aa21.56■■□□□ 1.04
CCM2-209ENST00000477605 PDCL3Q9H2J4 239 aa21.56■■□□□ 1.04
CCM2-209ENST00000477605 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.56■■□□□ 1.04
CCM2-209ENST00000477605 COL15A1P39059 1388 aa21.55■■□□□ 1.04
CCM2-209ENST00000477605 ELP1O95163 1332 aa21.55■■□□□ 1.04
CCM2-209ENST00000477605 NEURL1BA8MQ27 555 aa21.55■■□□□ 1.04
CCM2-209ENST00000477605 ST3GAL1Q11201 340 aa21.55■■□□□ 1.04
CCM2-209ENST00000477605 BLOC1S2Q6QNY1 142 aa21.55■■□□□ 1.04
CCM2-209ENST00000477605 FSD1Q9BTV5 496 aa21.55■■□□□ 1.04
CCM2-209ENST00000477605 METTL22Q9BUU2 404 aaPredicted RBP21.55■■□□□ 1.04
CCM2-209ENST00000477605 RFX7Q2KHR2 1363 aa21.55■■□□□ 1.04
CCM2-209ENST00000477605 DNM1Q05193 864 aaKnown RBP21.54■■□□□ 1.04
CCM2-209ENST00000477605 GCKRQ14397 625 aa21.54■■□□□ 1.04
CCM2-209ENST00000477605 CCDC8Q9H0W5 538 aaPredicted RBP21.54■■□□□ 1.04
CCM2-209ENST00000477605 SLC52A2Q9HAB3 445 aa21.54■■□□□ 1.04
CCM2-209ENST00000477605 COPRSQ9NQ92 184 aa21.54■■□□□ 1.04
CCM2-209ENST00000477605 TPCN1Q9ULQ1 816 aa21.54■■□□□ 1.04
CCM2-209ENST00000477605 KDM4AO75164 1064 aa21.54■■□□□ 1.04
CCM2-209ENST00000477605 KRT32Q14532 448 aa21.54■■□□□ 1.04
CCM2-209ENST00000477605 LARP1BQ659C4 914 aaKnown RBP21.54■■□□□ 1.04
CCM2-209ENST00000477605 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.54■■□□□ 1.04
CCM2-209ENST00000477605 RPS6KB1P23443 525 aa21.53■■□□□ 1.04
CCM2-209ENST00000477605 KRT85P78386 507 aa21.53■■□□□ 1.04
CCM2-209ENST00000477605 AIMP1Q12904 312 aaKnown RBP21.53■■□□□ 1.04
CCM2-209ENST00000477605 MAP7D2Q96T17 732 aa21.53■■□□□ 1.04
CCM2-209ENST00000477605 AXIN2Q9Y2T1 843 aa21.53■■□□□ 1.04
CCM2-209ENST00000477605 ERBB3P21860 1342 aa21.53■■□□□ 1.04
CCM2-209ENST00000477605 ABCC6O95255 1503 aa21.53■■□□□ 1.04
CCM2-209ENST00000477605 ATP5JP18859 108 aa21.52■■□□□ 1.04
CCM2-209ENST00000477605 USPL1Q5W0Q7 1092 aa21.52■■□□□ 1.04
CCM2-209ENST00000477605 SASS6Q6UVJ0 657 aa21.52■■□□□ 1.04
CCM2-209ENST00000477605 KRT28Q7Z3Y7 464 aa21.52■■□□□ 1.04
CCM2-209ENST00000477605 RAPGEF4Q8WZA2 1011 aa21.52■■□□□ 1.04
CCM2-209ENST00000477605 ADCY5O95622 1261 aa21.52■■□□□ 1.04
CCM2-209ENST00000477605 BOLA2Q9H3K6 86 aa21.52■■□□□ 1.04
CCM2-209ENST00000477605 RGS17Q9UGC6 210 aaPredicted RBP21.52■■□□□ 1.04
CCM2-209ENST00000477605 SPATA31A6Q5VVP1 1343 aa21.52■■□□□ 1.03
CCM2-209ENST00000477605 A0A0D9SFI3 127 aa21.51■■□□□ 1.03
CCM2-209ENST00000477605 VPS37CA5D8V6 355 aaPredicted RBP21.51■■□□□ 1.03
CCM2-209ENST00000477605 TPM3P06753 285 aa21.51■■□□□ 1.03
CCM2-209ENST00000477605 HCLS1P14317 486 aaPredicted RBP21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms