RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 GRM8O00222 908 aa25.76■■□□□ 1.71
SMIM11A-204ENST00000474455 GNAI3P08754 354 aa25.76■■□□□ 1.71
SMIM11A-204ENST00000474455 ZNF827Q17R98 1081 aa25.76■■□□□ 1.71
SMIM11A-204ENST00000474455 CHMP4BQ9H444 224 aaKnown RBP25.76■■□□□ 1.71
SMIM11A-204ENST00000474455 UPF2Q9HAU5 1272 aaKnown RBP25.76■■□□□ 1.71
SMIM11A-204ENST00000474455 BRPF3Q9ULD4 1205 aa25.76■■□□□ 1.71
SMIM11A-204ENST00000474455 GNAI2P04899 355 aa25.74■■□□□ 1.71
SMIM11A-204ENST00000474455 A0A087WZG4 1122 aa25.74■■□□□ 1.71
SMIM11A-204ENST00000474455 CEP85Q6P2H3 762 aa25.74■■□□□ 1.71
SMIM11A-204ENST00000474455 BCL2L12Q9HB09 334 aa25.74■■□□□ 1.71
SMIM11A-204ENST00000474455 USPL1Q5W0Q7 1092 aa25.73■■□□□ 1.71
SMIM11A-204ENST00000474455 KAZALD1Q96I82 304 aa25.73■■□□□ 1.71
SMIM11A-204ENST00000474455 RWDD1Q9H446 243 aaPredicted RBP25.73■■□□□ 1.71
SMIM11A-204ENST00000474455 CWC25Q9NXE8 425 aaPredicted RBP25.73■■□□□ 1.71
SMIM11A-204ENST00000474455 UBN2Q6ZU65 1347 aa25.73■■□□□ 1.71
SMIM11A-204ENST00000474455 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.72■■□□□ 1.71
SMIM11A-204ENST00000474455 TRAPPC3LQ5T215 181 aa25.72■■□□□ 1.71
SMIM11A-204ENST00000474455 SUCLG2Q96I99 432 aa25.72■■□□□ 1.71
SMIM11A-204ENST00000474455 UTYO14607 1347 aa25.72■■□□□ 1.71
SMIM11A-204ENST00000474455 SCN7AQ01118 1682 aa25.72■■□□□ 1.71
SMIM11A-204ENST00000474455 UBE3BQ7Z3V4 1068 aa25.72■■□□□ 1.71
SMIM11A-204ENST00000474455 SYNE4Q8N205 404 aa25.72■■□□□ 1.71
SMIM11A-204ENST00000474455 CCDC191Q8NCU4 936 aa25.72■■□□□ 1.71
SMIM11A-204ENST00000474455 AKT1S1Q96B36 256 aa25.72■■□□□ 1.71
SMIM11A-204ENST00000474455 ZNF34Q8IZ26 560 aa25.71■■□□□ 1.71
SMIM11A-204ENST00000474455 RTN4Q9NQC3 1192 aaKnown RBP25.71■■□□□ 1.71
SMIM11A-204ENST00000474455 NARFQ9UHQ1 456 aa25.71■■□□□ 1.71
SMIM11A-204ENST00000474455 CASP7P55210 303 aa25.7■■□□□ 1.71
SMIM11A-204ENST00000474455 NLRP10Q86W26 655 aa25.7■■□□□ 1.71
SMIM11A-204ENST00000474455 PNMA6EA0A0J9YXQ4 647 aa25.7■■□□□ 1.7
SMIM11A-204ENST00000474455 SF3B2Q13435 895 aaKnown RBP25.7■■□□□ 1.7
SMIM11A-204ENST00000474455 EPHA10Q5JZY3 1008 aa25.7■■□□□ 1.7
SMIM11A-204ENST00000474455 ANKRD44Q8N8A2 993 aa25.7■■□□□ 1.7
SMIM11A-204ENST00000474455 FAM177BA6PVY3 158 aa25.69■■□□□ 1.7
SMIM11A-204ENST00000474455 TRIM28Q13263 835 aaKnown RBP25.69■■□□□ 1.7
SMIM11A-204ENST00000474455 H7C1W4 665 aa25.68■■□□□ 1.7
SMIM11A-204ENST00000474455 RFC4P35249 363 aa25.68■■□□□ 1.7
SMIM11A-204ENST00000474455 HSP90AB3PQ58FF7 597 aa25.68■■□□□ 1.7
SMIM11A-204ENST00000474455 FAM89AQ96GI7 184 aa25.68■■□□□ 1.7
SMIM11A-204ENST00000474455 ZPR1O75312 459 aa25.68■■□□□ 1.7
SMIM11A-204ENST00000474455 HDAC1Q13547 482 aaPredicted RBP25.68■■□□□ 1.7
SMIM11A-204ENST00000474455 TBC1D32Q96NH3 1257 aa25.68■■□□□ 1.7
SMIM11A-204ENST00000474455 ANO8Q9HCE9 1232 aaPredicted RBP25.68■■□□□ 1.7
SMIM11A-204ENST00000474455 TFCP2L1Q9NZI6 479 aa25.68■■□□□ 1.7
SMIM11A-204ENST00000474455 SEC24BO95487 1268 aa25.67■■□□□ 1.7
SMIM11A-204ENST00000474455 BAG6P46379 1132 aa25.67■■□□□ 1.7
SMIM11A-204ENST00000474455 TBC1D9BQ66K14 1250 aa25.67■■□□□ 1.7
SMIM11A-204ENST00000474455 BICDL1Q6ZP65 573 aa25.67■■□□□ 1.7
SMIM11A-204ENST00000474455 BICC1Q9H694 974 aaKnown RBP25.67■■□□□ 1.7
SMIM11A-204ENST00000474455 NIP7Q9Y221 180 aaKnown RBP eCLIP25.67■■□□□ 1.7
SMIM11A-204ENST00000474455 SUSD4Q5VX71 490 aa25.66■■□□□ 1.7
SMIM11A-204ENST00000474455 USP42Q9H9J4 1324 aaKnown RBP25.66■■□□□ 1.7
SMIM11A-204ENST00000474455 ATP8B2P98198 1209 aa25.66■■□□□ 1.7
SMIM11A-204ENST00000474455 RPAP2Q8IXW5 612 aaPredicted RBP25.66■■□□□ 1.7
SMIM11A-204ENST00000474455 IBTKQ9P2D0 1353 aaPredicted RBP25.65■■□□□ 1.7
SMIM11A-204ENST00000474455 SSFA2P28290 1259 aa25.65■■□□□ 1.7
SMIM11A-204ENST00000474455 CLEC4GQ6UXB4 293 aa25.65■■□□□ 1.7
SMIM11A-204ENST00000474455 PDZRN3Q9UPQ7 1066 aa25.65■■□□□ 1.7
SMIM11A-204ENST00000474455 PPP1R42Q7Z4L9 355 aa25.64■■□□□ 1.7
SMIM11A-204ENST00000474455 FAM43AQ8N2R8 423 aa25.64■■□□□ 1.69
SMIM11A-204ENST00000474455 ZNF652Q9Y2D9 606 aa25.64■■□□□ 1.69
SMIM11A-204ENST00000474455 ADRA2BP18089 450 aa25.63■■□□□ 1.69
SMIM11A-204ENST00000474455 COL23A1Q86Y22 540 aaPredicted RBP25.63■■□□□ 1.69
SMIM11A-204ENST00000474455 ANTXR1Q9H6X2 564 aa25.63■■□□□ 1.69
SMIM11A-204ENST00000474455 TRMT112Q9UI30 125 aaKnown RBP25.63■■□□□ 1.69
SMIM11A-204ENST00000474455 ZBTB38Q8NAP3 1195 aaPredicted RBP25.62■■□□□ 1.69
SMIM11A-204ENST00000474455 PCCAP05165 728 aaPredicted RBP25.62■■□□□ 1.69
SMIM11A-204ENST00000474455 L1TD1Q5T7N2 865 aaKnown RBP25.62■■□□□ 1.69
SMIM11A-204ENST00000474455 MYH3P11055 1940 aa25.61■■□□□ 1.69
SMIM11A-204ENST00000474455 GYS1P13807 737 aa25.61■■□□□ 1.69
SMIM11A-204ENST00000474455 FOXO4P98177 505 aa25.61■■□□□ 1.69
SMIM11A-204ENST00000474455 SRGAP3O43295 1099 aa25.6■■□□□ 1.69
SMIM11A-204ENST00000474455 NUTM1Q86Y26 1132 aa25.6■■□□□ 1.69
SMIM11A-204ENST00000474455 PNPLA7Q6ZV29 1317 aa25.6■■□□□ 1.69
SMIM11A-204ENST00000474455 DDX60Q8IY21 1712 aaKnown RBP25.58■■□□□ 1.69
SMIM11A-204ENST00000474455 NTSR2O95665 410 aa25.58■■□□□ 1.69
SMIM11A-204ENST00000474455 SLC15A2Q16348 729 aa25.58■■□□□ 1.69
SMIM11A-204ENST00000474455 SSH3Q8TE77 659 aa25.58■■□□□ 1.69
SMIM11A-204ENST00000474455 CASZ1Q86V15 1759 aa25.58■■□□□ 1.69
SMIM11A-204ENST00000474455 SMC5Q8IY18 1101 aa25.57■■□□□ 1.68
SMIM11A-204ENST00000474455 UTP14AQ9BVJ6 771 aaKnown RBP25.57■■□□□ 1.68
SMIM11A-204ENST00000474455 POLA2Q14181 598 aa25.57■■□□□ 1.68
SMIM11A-204ENST00000474455 PARP10Q53GL7 1025 aa25.57■■□□□ 1.68
SMIM11A-204ENST00000474455 LMBR1LQ6UX01 489 aa25.57■■□□□ 1.68
SMIM11A-204ENST00000474455 CCDC125Q86Z20 511 aa25.57■■□□□ 1.68
SMIM11A-204ENST00000474455 UPF1Q92900 1129 aaKnown RBP eCLIP25.57■■□□□ 1.68
SMIM11A-204ENST00000474455 COL24A1Q17RW2 1714 aa25.57■■□□□ 1.68
SMIM11A-204ENST00000474455 MTX1Q13505 466 aa25.56■■□□□ 1.68
SMIM11A-204ENST00000474455 NFIXQ14938 502 aa25.56■■□□□ 1.68
SMIM11A-204ENST00000474455 CCDC24Q8N4L8 307 aa25.56■■□□□ 1.68
SMIM11A-204ENST00000474455 KLHDC4Q8TBB5 520 aa25.56■■□□□ 1.68
SMIM11A-204ENST00000474455 CCDC85AQ96PX6 553 aaPredicted RBP25.56■■□□□ 1.68
SMIM11A-204ENST00000474455 SETDB2Q96T68 719 aa25.56■■□□□ 1.68
SMIM11A-204ENST00000474455 DCTPP1Q9H773 170 aa25.56■■□□□ 1.68
SMIM11A-204ENST00000474455 PA2G4Q9UQ80 394 aaKnown RBP25.56■■□□□ 1.68
SMIM11A-204ENST00000474455 EXOC6BQ9Y2D4 811 aa25.56■■□□□ 1.68
SMIM11A-204ENST00000474455 APBB1O00213 710 aa25.55■■□□□ 1.68
SMIM11A-204ENST00000474455 IRS4O14654 1257 aaPredicted RBP25.55■■□□□ 1.68
SMIM11A-204ENST00000474455 HCLS1P14317 486 aaPredicted RBP25.55■■□□□ 1.68
SMIM11A-204ENST00000474455 RABL6Q3YEC7 729 aaPredicted RBP25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms