RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-206ENST00000474215 KIF3CO14782 793 aa14.46□□□□□ -0.09
CKS1B-206ENST00000474215 HOXA10P31260 410 aaPredicted RBP14.46□□□□□ -0.09
CKS1B-206ENST00000474215 FAM9BQ8IZU0 186 aa14.46□□□□□ -0.09
CKS1B-206ENST00000474215 RPGRQ92834 1020 aaKnown RBP14.46□□□□□ -0.09
CKS1B-206ENST00000474215 TSR2Q969E8 191 aaKnown RBP14.46□□□□□ -0.09
CKS1B-206ENST00000474215 RIC1Q4ADV7 1423 aa14.46□□□□□ -0.09
CKS1B-206ENST00000474215 RNF123Q5XPI4 1314 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 KDM2BQ8NHM5 1336 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 LTBP3Q9NS15 1303 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 ZC3H4Q9UPT8 1303 aaKnown RBP14.45□□□□□ -0.1
CKS1B-206ENST00000474215 CCDC93Q567U6 631 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 CCDC30Q5VVM6 783 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 TSPYL6Q8N831 410 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 NLRP3Q96P20 1036 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 TAOK3Q9H2K8 898 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 NMRK2Q9NPI5 230 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 TRMT112Q9UI30 125 aaKnown RBP14.45□□□□□ -0.1
CKS1B-206ENST00000474215 SALL2Q9Y467 1007 aaPredicted RBP14.45□□□□□ -0.1
CKS1B-206ENST00000474215 SLX4Q8IY92 1834 aa14.45□□□□□ -0.1
CKS1B-206ENST00000474215 C3orf67Q6ZVT6 689 aa14.44□□□□□ -0.1
CKS1B-206ENST00000474215 WDR63Q8IWG1 891 aa14.44□□□□□ -0.1
CKS1B-206ENST00000474215 RTKN2Q8IZC4 609 aa14.44□□□□□ -0.1
CKS1B-206ENST00000474215 RBM17Q96I25 401 aaKnown RBP14.44□□□□□ -0.1
CKS1B-206ENST00000474215 CRAMP1Q96RY5 1269 aa14.44□□□□□ -0.1
CKS1B-206ENST00000474215 PHAXQ9H814 394 aaKnown RBP14.44□□□□□ -0.1
CKS1B-206ENST00000474215 GOLGA2Q08379 1002 aa14.43□□□□□ -0.1
CKS1B-206ENST00000474215 OLFM4Q6UX06 510 aa14.43□□□□□ -0.1
CKS1B-206ENST00000474215 SYNE4Q8N205 404 aa14.43□□□□□ -0.1
CKS1B-206ENST00000474215 ISCA1Q9BUE6 129 aa14.43□□□□□ -0.1
CKS1B-206ENST00000474215 SBF1O95248 1867 aa14.43□□□□□ -0.1
CKS1B-206ENST00000474215 SH3TC1Q8TE82 1336 aa14.42□□□□□ -0.1
CKS1B-206ENST00000474215 GLTPD2A6NH11 291 aa14.42□□□□□ -0.1
CKS1B-206ENST00000474215 ATP5J2-PTCD1G3V325 749 aa14.42□□□□□ -0.1
CKS1B-206ENST00000474215 TRIM28Q13263 835 aaKnown RBP14.42□□□□□ -0.1
CKS1B-206ENST00000474215 RIC3Q7Z5B4 369 aa14.42□□□□□ -0.1
CKS1B-206ENST00000474215 TOMM70O94826 608 aa14.41□□□□□ -0.1
CKS1B-206ENST00000474215 HCLS1P14317 486 aaPredicted RBP14.41□□□□□ -0.1
CKS1B-206ENST00000474215 FKBP4Q02790 459 aaKnown RBP eCLIP14.41□□□□□ -0.1
CKS1B-206ENST00000474215 TWISTNBQ3B726 338 aaPredicted RBP14.41□□□□□ -0.1
CKS1B-206ENST00000474215 CC2D2BQ6DHV5 1058 aa14.41□□□□□ -0.1
CKS1B-206ENST00000474215 DPY19L2Q6NUT2 758 aa14.41□□□□□ -0.1
CKS1B-206ENST00000474215 RRAGCQ9HB90 399 aa14.41□□□□□ -0.1
CKS1B-206ENST00000474215 TNRC6CQ9HCJ0 1690 aaKnown RBP14.41□□□□□ -0.1
CKS1B-206ENST00000474215 DDX58O95786 925 aaKnown RBP14.4□□□□□ -0.1
CKS1B-206ENST00000474215 ZNF428Q96B54 188 aa14.4□□□□□ -0.1
CKS1B-206ENST00000474215 FAM89AQ96GI7 184 aa14.4□□□□□ -0.1
CKS1B-206ENST00000474215 STK31Q9BXU1 1019 aa14.4□□□□□ -0.1
CKS1B-206ENST00000474215 FER1L6Q2WGJ9 1857 aa14.4□□□□□ -0.1
CKS1B-206ENST00000474215 ARFGEF2Q9Y6D5 1785 aa14.39□□□□□ -0.11
CKS1B-206ENST00000474215 GRIPAP1Q4V328 841 aa14.39□□□□□ -0.11
CKS1B-206ENST00000474215 C16orf71Q8IYS4 520 aaPredicted RBP14.39□□□□□ -0.11
CKS1B-206ENST00000474215 ZNF277Q9NRM2 450 aaPredicted RBP14.39□□□□□ -0.11
CKS1B-206ENST00000474215 FANCIQ9NVI1 1328 aa14.39□□□□□ -0.11
CKS1B-206ENST00000474215 TCERG1O14776 1098 aaKnown RBP14.38□□□□□ -0.11
CKS1B-206ENST00000474215 PPEF1O14829 653 aaPredicted RBP14.38□□□□□ -0.11
CKS1B-206ENST00000474215 BBOX1O75936 387 aa14.38□□□□□ -0.11
CKS1B-206ENST00000474215 SLC4A2P04920 1241 aa14.38□□□□□ -0.11
CKS1B-206ENST00000474215 VEGFAP15692 232 aaPredicted RBP14.38□□□□□ -0.11
CKS1B-206ENST00000474215 PSMD1Q99460 953 aa14.38□□□□□ -0.11
CKS1B-206ENST00000474215 MYD88Q99836 296 aa14.38□□□□□ -0.11
CKS1B-206ENST00000474215 ANKRD36CQ5JPF3 1778 aa14.37□□□□□ -0.11
CKS1B-206ENST00000474215 EXOSC9Q06265 439 aaKnown RBP14.37□□□□□ -0.11
CKS1B-206ENST00000474215 KSR2Q6VAB6 950 aa14.37□□□□□ -0.11
CKS1B-206ENST00000474215 DDX46Q7L014 1031 aaKnown RBP14.37□□□□□ -0.11
CKS1B-206ENST00000474215 CCDC191Q8NCU4 936 aa14.37□□□□□ -0.11
CKS1B-206ENST00000474215 RBM46Q8TBY0 533 aaKnown RBP14.37□□□□□ -0.11
CKS1B-206ENST00000474215 METTL22Q9BUU2 404 aaPredicted RBP14.37□□□□□ -0.11
CKS1B-206ENST00000474215 TMX4Q9H1E5 349 aaPredicted RBP14.37□□□□□ -0.11
CKS1B-206ENST00000474215 SPINK5Q9NQ38 1064 aaPredicted RBP14.37□□□□□ -0.11
CKS1B-206ENST00000474215 MAP3K2Q9Y2U5 619 aa14.37□□□□□ -0.11
CKS1B-206ENST00000474215 ATP6V0A2Q9Y487 856 aa14.37□□□□□ -0.11
CKS1B-206ENST00000474215 CACNA1SQ13698 1873 aa14.37□□□□□ -0.11
CKS1B-206ENST00000474215 ABCC4O15439 1325 aa14.37□□□□□ -0.11
CKS1B-206ENST00000474215 PI4KAP2A4QPH2 592 aa14.36□□□□□ -0.11
CKS1B-206ENST00000474215 IRS4O14654 1257 aaPredicted RBP14.36□□□□□ -0.11
CKS1B-206ENST00000474215 VAMP4O75379 141 aa14.36□□□□□ -0.11
CKS1B-206ENST00000474215 IARSP41252 1262 aaKnown RBP14.36□□□□□ -0.11
CKS1B-206ENST00000474215 SF3B3Q15393 1217 aaKnown RBP14.36□□□□□ -0.11
CKS1B-206ENST00000474215 RTL5Q5HYW3 569 aaPredicted RBP14.36□□□□□ -0.11
CKS1B-206ENST00000474215 PI4KAP1Q8N8J0 262 aa14.36□□□□□ -0.11
CKS1B-206ENST00000474215 ZBTB38Q8NAP3 1195 aaPredicted RBP14.36□□□□□ -0.11
CKS1B-206ENST00000474215 MYH16Q9H6N6 1097 aa14.36□□□□□ -0.11
CKS1B-206ENST00000474215 SNED1Q8TER0 1413 aa14.35□□□□□ -0.11
CKS1B-206ENST00000474215 DDNO94850 711 aaPredicted RBP14.35□□□□□ -0.11
CKS1B-206ENST00000474215 HSP90B1P14625 803 aaKnown RBP14.35□□□□□ -0.11
CKS1B-206ENST00000474215 HSPA6P17066 643 aa14.35□□□□□ -0.11
CKS1B-206ENST00000474215 G2E3Q7L622 706 aa14.35□□□□□ -0.11
CKS1B-206ENST00000474215 SP8Q8IXZ3 490 aa14.35□□□□□ -0.11
CKS1B-206ENST00000474215 CWC25Q9NXE8 425 aaPredicted RBP14.35□□□□□ -0.11
CKS1B-206ENST00000474215 CCDC88AQ3V6T2 1871 aa14.35□□□□□ -0.11
CKS1B-206ENST00000474215 POTECB2RU33 542 aa14.34□□□□□ -0.11
CKS1B-206ENST00000474215 PCCAP05165 728 aaPredicted RBP14.34□□□□□ -0.11
CKS1B-206ENST00000474215 GRAPQ13588 217 aa14.34□□□□□ -0.11
CKS1B-206ENST00000474215 SLC51AQ86UW1 340 aa14.34□□□□□ -0.11
CKS1B-206ENST00000474215 GRAPLQ8TC17 118 aaPredicted RBP14.34□□□□□ -0.11
CKS1B-206ENST00000474215 JDP2Q8WYK2 163 aa14.34□□□□□ -0.11
CKS1B-206ENST00000474215 TIAM2Q8IVF5 1701 aa14.34□□□□□ -0.11
CKS1B-206ENST00000474215 NEXNQ0ZGT2 675 aa14.33□□□□□ -0.12
CKS1B-206ENST00000474215 FSTL1Q12841 308 aa14.33□□□□□ -0.12
CKS1B-206ENST00000474215 TMC4Q7Z404 712 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms