RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CWC25Q9NXE8 425 aaPredicted RBP16.48■□□□□ 0.23
CCDC88A-211ENST00000471947 PI16Q6UXB8 463 aa16.48■□□□□ 0.23
CCDC88A-211ENST00000471947 HCLS1P14317 486 aaPredicted RBP16.48■□□□□ 0.23
CCDC88A-211ENST00000471947 SNX21Q969T3 373 aa16.48■□□□□ 0.23
CCDC88A-211ENST00000471947 MTMR7Q9Y216 660 aa16.48■□□□□ 0.23
CCDC88A-211ENST00000471947 C1orf167Q5SNV9 1468 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 DNAJC5Q9H3Z4 198 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 GRPEL1Q9HAV7 217 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 JAG2Q9Y219 1238 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 SSH2Q76I76 1423 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 ALDH1L1O75891 902 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 RAB3GAP1Q15042 981 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 METTL24Q5JXM2 366 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 GAS2L3Q86XJ1 694 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 USP32Q8NFA0 1604 aa16.47■□□□□ 0.23
CCDC88A-211ENST00000471947 IFIT1P09914 478 aaKnown RBP16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 TTC39AQ5SRH9 613 aa16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 RRP12Q5JTH9 1297 aaKnown RBP16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 BLOC1S2Q6QNY1 142 aa16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 SNX14Q9Y5W7 946 aa16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 ITSN1Q15811 1721 aa16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 NBPF26B4DH59 902 aa16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 NBPF14Q5TI25 921 aa16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 NBPF10Q6P3W6 841 aaKnown RBP16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 CCDC82Q8N4S0 544 aa16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 NBPF15Q8N660 670 aa16.46■□□□□ 0.23
CCDC88A-211ENST00000471947 H3BQV1 296 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 IFFO2Q5TF58 517 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 LDHAL6AQ6ZMR3 332 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 C8orf37Q96NL8 207 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 TAF6LQ9Y6J9 622 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 FER1L4A9Z1Z3 1794 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 SGSM2O43147 1006 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 FAM184AQ8NB25 1140 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 PI4K2BQ8TCG2 481 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 ANKARQ7Z5J8 1434 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 SPATA31A3Q5VYP0 1347 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 C3P01024 1663 aa16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 COL9A3Q14050 684 aaPredicted RBP16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 ZNF589Q86UQ0 364 aaPredicted RBP16.45■□□□□ 0.22
CCDC88A-211ENST00000471947 LARGE1O95461 756 aa16.44■□□□□ 0.22
CCDC88A-211ENST00000471947 CAMK4Q16566 473 aa16.44■□□□□ 0.22
CCDC88A-211ENST00000471947 DBNLQ9UJU6 430 aaKnown RBP16.44■□□□□ 0.22
CCDC88A-211ENST00000471947 CNPY2Q9Y2B0 182 aa16.44■□□□□ 0.22
CCDC88A-211ENST00000471947 NASPP49321 788 aaPredicted RBP16.44■□□□□ 0.22
CCDC88A-211ENST00000471947 LARP1BQ659C4 914 aaKnown RBP16.44■□□□□ 0.22
CCDC88A-211ENST00000471947 CCDC144CPQ8IYA2 1237 aa16.44■□□□□ 0.22
CCDC88A-211ENST00000471947 NSFL1CQ9UNZ2 370 aaKnown RBP16.44■□□□□ 0.22
CCDC88A-211ENST00000471947 STARD3NLO95772 234 aa16.43■□□□□ 0.22
CCDC88A-211ENST00000471947 PDIA6Q15084 440 aa16.43■□□□□ 0.22
CCDC88A-211ENST00000471947 EVI5LQ96CN4 794 aa16.43■□□□□ 0.22
CCDC88A-211ENST00000471947 KAZALD1Q96I82 304 aa16.43■□□□□ 0.22
CCDC88A-211ENST00000471947 NGLY1Q96IV0 654 aa16.43■□□□□ 0.22
CCDC88A-211ENST00000471947 PEAK1Q9H792 1746 aa16.43■□□□□ 0.22
CCDC88A-211ENST00000471947 TAF5LO75529 589 aa16.43■□□□□ 0.22
CCDC88A-211ENST00000471947 GJB2P29033 226 aa16.43■□□□□ 0.22
CCDC88A-211ENST00000471947 NRKQ7Z2Y5 1582 aa16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 GADD45BO75293 160 aaPredicted RBP16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 IFIT5Q13325 482 aaKnown RBP16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 RNF20Q5VTR2 975 aa16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 ABCF2Q9UG63 623 aa16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 ATP2B1P20020 1258 aa16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 TNNI3KQ59H18 835 aa16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 PIGBQ92521 554 aa16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 ANO8Q9HCE9 1232 aaPredicted RBP16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 FPGT-TNNI3KV9GXZ4 949 aa16.42■□□□□ 0.22
CCDC88A-211ENST00000471947 PHF14O94880 888 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 RXRAP19793 462 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 ADORA1P30542 326 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 TTLL5Q6EMB2 1281 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 CREB3L3Q68CJ9 461 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 BRF1Q92994 677 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 ZBTB1Q9Y2K1 713 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 ARHGAP23Q9P227 1491 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 ATP6V1AP38606 617 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 HLFQ16534 295 aa16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 DNTTIP2Q5QJE6 756 aaKnown RBP16.41■□□□□ 0.22
CCDC88A-211ENST00000471947 A0A1B0GUL7 405 aa16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 FAM98CQ17RN3 349 aaKnown RBP16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 CIZ1Q9ULV3 898 aaPredicted RBP16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 LIMCH1Q9UPQ0 1083 aa16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 PCDH11XQ9BZA7 1347 aa16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 PCDH11YQ9BZA8 1340 aa16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 DLG5Q8TDM6 1919 aa16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 CCDC158Q5M9N0 1113 aa16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 VPS53Q5VIR6 699 aa16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 PIBF1Q8WXW3 757 aa16.4■□□□□ 0.22
CCDC88A-211ENST00000471947 AK9Q5TCS8 1911 aa16.39■□□□□ 0.21
CCDC88A-211ENST00000471947 HOXB7P09629 217 aa16.39■□□□□ 0.21
CCDC88A-211ENST00000471947 DNM1Q05193 864 aaKnown RBP16.39■□□□□ 0.21
CCDC88A-211ENST00000471947 POLA2Q14181 598 aa16.39■□□□□ 0.21
CCDC88A-211ENST00000471947 PLBD2Q8NHP8 589 aa16.39■□□□□ 0.21
CCDC88A-211ENST00000471947 PTPN12Q05209 780 aaKnown RBP16.39■□□□□ 0.21
CCDC88A-211ENST00000471947 BICD2Q8TD16 824 aa16.39■□□□□ 0.21
CCDC88A-211ENST00000471947 MPHOSPH8Q99549 860 aa16.39■□□□□ 0.21
CCDC88A-211ENST00000471947 NCOA5Q9HCD5 579 aaKnown RBP16.39■□□□□ 0.21
CCDC88A-211ENST00000471947 SKOR2Q2VWA4 1001 aaPredicted RBP16.38■□□□□ 0.21
CCDC88A-211ENST00000471947 CEMIPQ8WUJ3 1361 aa16.38■□□□□ 0.21
CCDC88A-211ENST00000471947 A0A0G2JLW4 131 aa16.38■□□□□ 0.21
CCDC88A-211ENST00000471947 MRE11P49959 708 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms