RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 EIF5P55010 431 aaKnown RBP22.34■■□□□ 1.17
SMC4-211ENST00000469858 MFAP1P55081 439 aaKnown RBP22.34■■□□□ 1.17
SMC4-211ENST00000469858 TRIM28Q13263 835 aaKnown RBP22.34■■□□□ 1.17
SMC4-211ENST00000469858 NUTM1Q86Y26 1132 aa22.34■■□□□ 1.17
SMC4-211ENST00000469858 ERC1Q8IUD2 1116 aa22.34■■□□□ 1.17
SMC4-211ENST00000469858 KLHDC4Q8TBB5 520 aa22.34■■□□□ 1.17
SMC4-211ENST00000469858 G3BP1Q13283 466 aaKnown RBP eCLIP22.33■■□□□ 1.171e-39■■■■■ 140
SMC4-211ENST00000469858 HSP90AB3PQ58FF7 597 aa22.33■■□□□ 1.17
SMC4-211ENST00000469858 IPO9Q96P70 1041 aaKnown RBP22.33■■□□□ 1.17
SMC4-211ENST00000469858 SIL1Q9H173 461 aa22.33■■□□□ 1.17
SMC4-211ENST00000469858 CDC45O75419 566 aa22.32■■□□□ 1.16
SMC4-211ENST00000469858 GPTP24298 496 aa22.32■■□□□ 1.16
SMC4-211ENST00000469858 FOXO4P98177 505 aa22.32■■□□□ 1.16
SMC4-211ENST00000469858 LMBR1LQ6UX01 489 aa22.32■■□□□ 1.16
SMC4-211ENST00000469858 SDSP20132 328 aa22.32■■□□□ 1.16
SMC4-211ENST00000469858 TBC1D9Q6ZT07 1266 aa22.32■■□□□ 1.16
SMC4-211ENST00000469858 CHMP3Q9Y3E7 222 aa22.32■■□□□ 1.16
SMC4-211ENST00000469858 ERVV-1B6SEH8 477 aa22.31■■□□□ 1.16
SMC4-211ENST00000469858 KCNQ4P56696 695 aa22.31■■□□□ 1.16
SMC4-211ENST00000469858 RFX5P48382 616 aaPredicted RBP22.3■■□□□ 1.16
SMC4-211ENST00000469858 STAP2Q9UGK3 403 aa22.3■■□□□ 1.16
SMC4-211ENST00000469858 CLASRPQ8N2M8 674 aaKnown RBP22.3■■□□□ 1.16
SMC4-211ENST00000469858 LINC00116Q8NCU8 138 aa22.3■■□□□ 1.16
SMC4-211ENST00000469858 BRWD3Q6RI45 1802 aa22.29■■□□□ 1.16
SMC4-211ENST00000469858 SASH1O94885 1247 aa22.29■■□□□ 1.16
SMC4-211ENST00000469858 NLRP10Q86W26 655 aa22.29■■□□□ 1.16
SMC4-211ENST00000469858 FAM89AQ96GI7 184 aa22.29■■□□□ 1.16
SMC4-211ENST00000469858 COPRSQ9NQ92 184 aa22.29■■□□□ 1.16
SMC4-211ENST00000469858 MSH5O43196 834 aa22.29■■□□□ 1.16
SMC4-211ENST00000469858 PCCAP05165 728 aaPredicted RBP22.29■■□□□ 1.16
SMC4-211ENST00000469858 PTPN12Q05209 780 aaKnown RBP22.29■■□□□ 1.16
SMC4-211ENST00000469858 AOX1Q06278 1338 aa22.28■■□□□ 1.16
SMC4-211ENST00000469858 ZBTB38Q8NAP3 1195 aaPredicted RBP22.28■■□□□ 1.16
SMC4-211ENST00000469858 TBC1D32Q96NH3 1257 aa22.28■■□□□ 1.16
SMC4-211ENST00000469858 LY75O60449 1722 aa22.27■■□□□ 1.16
SMC4-211ENST00000469858 AK9Q5TCS8 1911 aa22.26■■□□□ 1.15
SMC4-211ENST00000469858 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.26■■□□□ 1.15
SMC4-211ENST00000469858 AACSQ86V21 672 aa22.25■■□□□ 1.15
SMC4-211ENST00000469858 DDRGK1Q96HY6 314 aa22.25■■□□□ 1.15
SMC4-211ENST00000469858 UBN2Q6ZU65 1347 aa22.25■■□□□ 1.15
SMC4-211ENST00000469858 MYH3P11055 1940 aa22.25■■□□□ 1.15
SMC4-211ENST00000469858 BCORQ6W2J9 1755 aa22.25■■□□□ 1.15
SMC4-211ENST00000469858 CAMTA2O94983 1202 aa22.25■■□□□ 1.15
SMC4-211ENST00000469858 IFIT2P09913 472 aaKnown RBP22.25■■□□□ 1.15
SMC4-211ENST00000469858 CNTNAP4Q9C0A0 1308 aa22.25■■□□□ 1.15
SMC4-211ENST00000469858 TRIM6-TRIM34B2RNG4 842 aa22.24■■□□□ 1.15
SMC4-211ENST00000469858 ZNF34Q8IZ26 560 aa22.24■■□□□ 1.15
SMC4-211ENST00000469858 SYNE4Q8N205 404 aa22.24■■□□□ 1.15
SMC4-211ENST00000469858 C22orf23Q9BZE7 217 aa22.24■■□□□ 1.15
SMC4-211ENST00000469858 CCNL1Q9UK58 526 aaPredicted RBP22.24■■□□□ 1.15
SMC4-211ENST00000469858 TAF1LQ8IZX4 1826 aa22.24■■□□□ 1.15
SMC4-211ENST00000469858 PI4K2BQ8TCG2 481 aa22.23■■□□□ 1.15
SMC4-211ENST00000469858 TRMT112Q9UI30 125 aaKnown RBP22.23■■□□□ 1.15
SMC4-211ENST00000469858 CDHR2Q9BYE9 1310 aa22.23■■□□□ 1.15
SMC4-211ENST00000469858 CASC1Q6TDU7 716 aa22.23■■□□□ 1.15
SMC4-211ENST00000469858 RILPL2Q969X0 211 aa22.23■■□□□ 1.15
SMC4-211ENST00000469858 PLA2G12BQ9BX93 195 aa22.23■■□□□ 1.15
SMC4-211ENST00000469858 TTC41PQ6P2S7 1318 aa22.22■■□□□ 1.15
SMC4-211ENST00000469858 USP42Q9H9J4 1324 aaKnown RBP22.22■■□□□ 1.15
SMC4-211ENST00000469858 EAF2Q96CJ1 260 aaPredicted RBP22.22■■□□□ 1.15
SMC4-211ENST00000469858 KRT27Q7Z3Y8 459 aa22.21■■□□□ 1.15
SMC4-211ENST00000469858 GPATCH3Q96I76 525 aa22.21■■□□□ 1.15
SMC4-211ENST00000469858 CCDC85AQ96PX6 553 aaPredicted RBP22.21■■□□□ 1.15
SMC4-211ENST00000469858 CCDC8Q9H0W5 538 aaPredicted RBP22.21■■□□□ 1.15
SMC4-211ENST00000469858 TFCP2Q12800 502 aa22.2■■□□□ 1.14
SMC4-211ENST00000469858 BCL11BQ9C0K0 894 aaPredicted RBP22.2■■□□□ 1.14
SMC4-211ENST00000469858 IRS4O14654 1257 aaPredicted RBP22.19■■□□□ 1.14
SMC4-211ENST00000469858 CCDC57Q2TAC2 916 aa22.19■■□□□ 1.14
SMC4-211ENST00000469858 ZNF772Q68DY9 489 aaPredicted RBP22.19■■□□□ 1.14
SMC4-211ENST00000469858 ZNF594Q96JF6 807 aaPredicted RBP22.19■■□□□ 1.14
SMC4-211ENST00000469858 ECHDC1Q9NTX5 307 aa22.19■■□□□ 1.14
SMC4-211ENST00000469858 ERC2O15083 957 aa22.19■■□□□ 1.14
SMC4-211ENST00000469858 GLRX3O76003 335 aaKnown RBP22.19■■□□□ 1.14
SMC4-211ENST00000469858 MAP4K4O95819 1239 aaPredicted RBP22.19■■□□□ 1.14
SMC4-211ENST00000469858 TLR7Q9NYK1 1049 aaKnown RBP22.19■■□□□ 1.14
SMC4-211ENST00000469858 FAM177BA6PVY3 158 aa22.18■■□□□ 1.14
SMC4-211ENST00000469858 RC3H1Q5TC82 1133 aaKnown RBP22.18■■□□□ 1.14
SMC4-211ENST00000469858 SUSD4Q5VX71 490 aa22.18■■□□□ 1.14
SMC4-211ENST00000469858 FAM196AQ6ZSG2 479 aa22.18■■□□□ 1.14
SMC4-211ENST00000469858 ZNF652Q9Y2D9 606 aa22.18■■□□□ 1.14
SMC4-211ENST00000469858 SCN7AQ01118 1682 aa22.18■■□□□ 1.14
SMC4-211ENST00000469858 CSF1RP07333 972 aa22.18■■□□□ 1.14
SMC4-211ENST00000469858 SMIM5Q71RC9 77 aa22.18■■□□□ 1.14
SMC4-211ENST00000469858 NIP7Q9Y221 180 aaKnown RBP eCLIP22.18■■□□□ 1.141e-7■■■■■ 83.2
SMC4-211ENST00000469858 GNPATO15228 680 aa22.17■■□□□ 1.14
SMC4-211ENST00000469858 EIF5BO60841 1220 aaKnown RBP22.17■■□□□ 1.14
SMC4-211ENST00000469858 CTSWP56202 376 aa22.17■■□□□ 1.14
SMC4-211ENST00000469858 RBM6P78332 1123 aaKnown RBP22.17■■□□□ 1.14
SMC4-211ENST00000469858 PARP10Q53GL7 1025 aa22.17■■□□□ 1.14
SMC4-211ENST00000469858 TNNI3KQ59H18 835 aa22.17■■□□□ 1.14
SMC4-211ENST00000469858 ATG9AQ7Z3C6 839 aa22.17■■□□□ 1.14
SMC4-211ENST00000469858 FPGT-TNNI3KV9GXZ4 949 aa22.17■■□□□ 1.14
SMC4-211ENST00000469858 C4BP0C0L5 1744 aa22.16■■□□□ 1.14
SMC4-211ENST00000469858 EP400Q96L91 3159 aa22.16■■□□□ 1.14
SMC4-211ENST00000469858 EYA2O00167 538 aa22.16■■□□□ 1.14
SMC4-211ENST00000469858 RPS6KA4O75676 772 aa22.16■■□□□ 1.14
SMC4-211ENST00000469858 IFIT5Q13325 482 aaKnown RBP22.16■■□□□ 1.14
SMC4-211ENST00000469858 LRRC24Q50LG9 513 aa22.16■■□□□ 1.14
SMC4-211ENST00000469858 TTLL11Q8NHH1 800 aa22.16■■□□□ 1.14
SMC4-211ENST00000469858 UTP14AQ9BVJ6 771 aaKnown RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms