RNA–Protein interactions for RNA: ENST00000469129.1

SMC1A-205, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-205ENST00000469129 TBC1D9Q6ZT07 1266 aa11.47□□□□□ -0.57
SMC1A-205ENST00000469129 TTLL7Q6ZT98 887 aa11.47□□□□□ -0.57
SMC1A-205ENST00000469129 UBE3BQ7Z3V4 1068 aa11.47□□□□□ -0.57
SMC1A-205ENST00000469129 CLASRPQ8N2M8 674 aaKnown RBP11.47□□□□□ -0.57
SMC1A-205ENST00000469129 C22orf23Q9BZE7 217 aa11.47□□□□□ -0.57
SMC1A-205ENST00000469129 ZBTB3Q9H5J0 574 aa11.47□□□□□ -0.57
SMC1A-205ENST00000469129 EP400Q96L91 3159 aa11.47□□□□□ -0.57
SMC1A-205ENST00000469129 DDX60Q8IY21 1712 aaKnown RBP11.46□□□□□ -0.57
SMC1A-205ENST00000469129 USP42Q9H9J4 1324 aaKnown RBP11.46□□□□□ -0.57
SMC1A-205ENST00000469129 ERC2O15083 957 aa11.46□□□□□ -0.57
SMC1A-205ENST00000469129 IL6STP40189 918 aaPredicted RBP11.46□□□□□ -0.57
SMC1A-205ENST00000469129 C16orf71Q8IYS4 520 aaPredicted RBP11.46□□□□□ -0.57
SMC1A-205ENST00000469129 OTUD7AQ8TE49 926 aaPredicted RBP11.46□□□□□ -0.57
SMC1A-205ENST00000469129 KAZALD1Q96I82 304 aa11.46□□□□□ -0.57
SMC1A-205ENST00000469129 ARAP2Q8WZ64 1704 aa11.46□□□□□ -0.58
SMC1A-205ENST00000469129 ATP5J2-PTCD1G3V325 749 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 H7C1W4 665 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 REC8O95072 547 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 SDSP20132 328 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 RBM25P49756 843 aaKnown RBP11.45□□□□□ -0.58
SMC1A-205ENST00000469129 CASP7P55210 303 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 TRIM28Q13263 835 aaKnown RBP11.45□□□□□ -0.58
SMC1A-205ENST00000469129 TCIRG1Q13488 830 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 KRT27Q7Z3Y8 459 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 ISCA1Q9BUE6 129 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 BCL11AQ9H165 835 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 IL1RAPL2Q9NP60 686 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 COPRSQ9NQ92 184 aa11.45□□□□□ -0.58
SMC1A-205ENST00000469129 ZNF330Q9Y3S2 320 aaPredicted RBP11.45□□□□□ -0.58
SMC1A-205ENST00000469129 COL24A1Q17RW2 1714 aa11.44□□□□□ -0.58
SMC1A-205ENST00000469129 CDHR2Q9BYE9 1310 aa11.44□□□□□ -0.58
SMC1A-205ENST00000469129 ERVV-1B6SEH8 477 aa11.44□□□□□ -0.58
SMC1A-205ENST00000469129 GIGYF2Q6Y7W6 1299 aaKnown RBP11.44□□□□□ -0.58
SMC1A-205ENST00000469129 ACSBG1Q96GR2 724 aa11.44□□□□□ -0.58
SMC1A-205ENST00000469129 CCDC87Q9NVE4 849 aa11.44□□□□□ -0.58
SMC1A-205ENST00000469129 LRP5O75197 1615 aa11.44□□□□□ -0.58
SMC1A-205ENST00000469129 MYH7P12883 1935 aa11.44□□□□□ -0.58
SMC1A-205ENST00000469129 C4AP0C0L4 1744 aa11.43□□□□□ -0.58
SMC1A-205ENST00000469129 C4BP0C0L5 1744 aa11.43□□□□□ -0.58
SMC1A-205ENST00000469129 LOC102724428A0A0B4J2F2 783 aa11.43□□□□□ -0.58
SMC1A-205ENST00000469129 GLRX3O76003 335 aaKnown RBP11.43□□□□□ -0.58
SMC1A-205ENST00000469129 PCCAP05165 728 aaPredicted RBP11.43□□□□□ -0.58
SMC1A-205ENST00000469129 IFIT2P09913 472 aaKnown RBP11.43□□□□□ -0.58
SMC1A-205ENST00000469129 ATP6V1AP38606 617 aa11.43□□□□□ -0.58
SMC1A-205ENST00000469129 SIK1P57059 783 aa11.43□□□□□ -0.58
SMC1A-205ENST00000469129 CNTROBQ8N137 903 aa11.43□□□□□ -0.58
SMC1A-205ENST00000469129 ZBTB1Q9Y2K1 713 aa11.43□□□□□ -0.58
SMC1A-205ENST00000469129 TRIM6-TRIM34B2RNG4 842 aa11.42□□□□□ -0.58
SMC1A-205ENST00000469129 NUTM1Q86Y26 1132 aa11.42□□□□□ -0.58
SMC1A-205ENST00000469129 SLC4A9Q96Q91 983 aa11.42□□□□□ -0.58
SMC1A-205ENST00000469129 PA2G4Q9UQ80 394 aaKnown RBP11.42□□□□□ -0.58
SMC1A-205ENST00000469129 A0A1B0GUL6 1792 aa11.41□□□□□ -0.58
SMC1A-205ENST00000469129 EPB41L2O43491 1005 aaKnown RBP11.41□□□□□ -0.58
SMC1A-205ENST00000469129 EPHA10Q5JZY3 1008 aa11.41□□□□□ -0.58
SMC1A-205ENST00000469129 AACSQ86V21 672 aa11.41□□□□□ -0.58
SMC1A-205ENST00000469129 DZIP3Q86Y13 1208 aaKnown RBP11.41□□□□□ -0.58
SMC1A-205ENST00000469129 PI4K2BQ8TCG2 481 aa11.41□□□□□ -0.58
SMC1A-205ENST00000469129 PLA2G12BQ9BX93 195 aa11.41□□□□□ -0.58
SMC1A-205ENST00000469129 ECHDC1Q9NTX5 307 aa11.41□□□□□ -0.58
SMC1A-205ENST00000469129 FBXO3Q9UK99 471 aa11.41□□□□□ -0.58
SMC1A-205ENST00000469129 RGL2O15211 777 aa11.4□□□□□ -0.58
SMC1A-205ENST00000469129 HSP90B1P14625 803 aaKnown RBP11.4□□□□□ -0.58
SMC1A-205ENST00000469129 CRKLP46109 303 aaKnown RBP11.4□□□□□ -0.58
SMC1A-205ENST00000469129 RFX5P48382 616 aaPredicted RBP11.4□□□□□ -0.58
SMC1A-205ENST00000469129 EIF5P55010 431 aaKnown RBP11.4□□□□□ -0.58
SMC1A-205ENST00000469129 FOXO4P98177 505 aa11.4□□□□□ -0.58
SMC1A-205ENST00000469129 LMBR1LQ6UX01 489 aa11.4□□□□□ -0.58
SMC1A-205ENST00000469129 CCDC125Q86Z20 511 aa11.4□□□□□ -0.58
SMC1A-205ENST00000469129 ZBTB38Q8NAP3 1195 aaPredicted RBP11.4□□□□□ -0.58
SMC1A-205ENST00000469129 RILPL2Q969X0 211 aa11.4□□□□□ -0.58
SMC1A-205ENST00000469129 ARXQ96QS3 562 aa11.4□□□□□ -0.58
SMC1A-205ENST00000469129 ZNF652Q9Y2D9 606 aa11.4□□□□□ -0.58
SMC1A-205ENST00000469129 CHMP3Q9Y3E7 222 aa11.4□□□□□ -0.58
SMC1A-205ENST00000469129 ZNF609O15014 1411 aa11.4□□□□□ -0.58
SMC1A-205ENST00000469129 RFX7Q2KHR2 1363 aa11.4□□□□□ -0.59
SMC1A-205ENST00000469129 CNTNAP4Q9C0A0 1308 aa11.39□□□□□ -0.59
SMC1A-205ENST00000469129 CIAO1O76071 339 aa11.39□□□□□ -0.59
SMC1A-205ENST00000469129 SASH1O94885 1247 aa11.39□□□□□ -0.59
SMC1A-205ENST00000469129 MCCP23508 829 aa11.39□□□□□ -0.59
SMC1A-205ENST00000469129 PTPN12Q05209 780 aaKnown RBP11.39□□□□□ -0.59
SMC1A-205ENST00000469129 FAM182BQ5T319 152 aa11.39□□□□□ -0.59
SMC1A-205ENST00000469129 HSCBQ8IWL3 235 aa11.39□□□□□ -0.59
SMC1A-205ENST00000469129 AK7Q96M32 723 aa11.39□□□□□ -0.59
SMC1A-205ENST00000469129 SIL1Q9H173 461 aa11.39□□□□□ -0.59
SMC1A-205ENST00000469129 GPR108Q9NPR9 543 aa11.39□□□□□ -0.59
SMC1A-205ENST00000469129 UBR3Q6ZT12 1888 aa11.38□□□□□ -0.59
SMC1A-205ENST00000469129 HIP1O00291 1037 aa11.38□□□□□ -0.59
SMC1A-205ENST00000469129 IL15P40933 162 aaPredicted RBP11.38□□□□□ -0.59
SMC1A-205ENST00000469129 SF3B2Q13435 895 aaKnown RBP11.38□□□□□ -0.59
SMC1A-205ENST00000469129 PARP10Q53GL7 1025 aa11.38□□□□□ -0.59
SMC1A-205ENST00000469129 TSHZ3Q63HK5 1081 aa11.38□□□□□ -0.59
SMC1A-205ENST00000469129 INTS5Q6P9B9 1019 aaKnown RBP11.38□□□□□ -0.59
SMC1A-205ENST00000469129 NLRP10Q86W26 655 aa11.38□□□□□ -0.59
SMC1A-205ENST00000469129 ESYT1Q9BSJ8 1104 aa11.38□□□□□ -0.59
SMC1A-205ENST00000469129 RGPD3A6NKT7 1758 aaPredicted RBP11.37□□□□□ -0.59
SMC1A-205ENST00000469129 RGPD4Q7Z3J3 1758 aa11.37□□□□□ -0.59
SMC1A-205ENST00000469129 CHMLP26374 656 aa11.37□□□□□ -0.59
SMC1A-205ENST00000469129 ITPK1Q13572 414 aa11.37□□□□□ -0.59
SMC1A-205ENST00000469129 CCDC57Q2TAC2 916 aa11.37□□□□□ -0.59
SMC1A-205ENST00000469129 TNNI3KQ59H18 835 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms