RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 TRMT112Q9UI30 125 aaKnown RBP15.4■□□□□ 0.06
SHROOM3-202ENST00000466541 NTSR2O95665 410 aa15.39■□□□□ 0.05
SHROOM3-202ENST00000466541 DALRD3Q5D0E6 543 aaKnown RBP15.39■□□□□ 0.05
SHROOM3-202ENST00000466541 SYNE4Q8N205 404 aa15.39■□□□□ 0.05
SHROOM3-202ENST00000466541 BCL2L13Q9BXK5 485 aa15.39■□□□□ 0.05
SHROOM3-202ENST00000466541 BRCA1P38398 1863 aaKnown RBP15.38■□□□□ 0.05
SHROOM3-202ENST00000466541 COL11A2P13942 1736 aaPredicted RBP15.38■□□□□ 0.05
SHROOM3-202ENST00000466541 KSR2Q6VAB6 950 aa15.38■□□□□ 0.05
SHROOM3-202ENST00000466541 JARID2Q92833 1246 aaPredicted RBP15.38■□□□□ 0.05
SHROOM3-202ENST00000466541 UTRNP46939 3433 aa15.38■□□□□ 0.05
SHROOM3-202ENST00000466541 ABCC12Q96J65 1359 aa15.37■□□□□ 0.05
SHROOM3-202ENST00000466541 GRIN3BO60391 1043 aa15.37■□□□□ 0.05
SHROOM3-202ENST00000466541 HCLS1P14317 486 aaPredicted RBP15.37■□□□□ 0.05
SHROOM3-202ENST00000466541 ARHGAP27Q6ZUM4 889 aa15.37■□□□□ 0.05
SHROOM3-202ENST00000466541 TRMT2AQ8IZ69 625 aaKnown RBP15.37■□□□□ 0.05
SHROOM3-202ENST00000466541 TTLL6Q8N841 843 aa15.37■□□□□ 0.05
SHROOM3-202ENST00000466541 ISCA1Q9BUE6 129 aa15.37■□□□□ 0.05
SHROOM3-202ENST00000466541 METTL22Q9BUU2 404 aaPredicted RBP15.37■□□□□ 0.05
SHROOM3-202ENST00000466541 ADCY9O60503 1353 aa15.36■□□□□ 0.05
SHROOM3-202ENST00000466541 TNRC6CQ9HCJ0 1690 aaKnown RBP15.36■□□□□ 0.05
SHROOM3-202ENST00000466541 F6X3S4 739 aa15.36■□□□□ 0.05
SHROOM3-202ENST00000466541 NEXNQ0ZGT2 675 aa15.36■□□□□ 0.05
SHROOM3-202ENST00000466541 FAM89AQ96GI7 184 aa15.36■□□□□ 0.05
SHROOM3-202ENST00000466541 DLEC1Q9Y238 1755 aa15.36■□□□□ 0.05
SHROOM3-202ENST00000466541 SRGNP10124 158 aa15.35■□□□□ 0.05
SHROOM3-202ENST00000466541 CWF19L2Q2TBE0 894 aaKnown RBP15.35■□□□□ 0.05
SHROOM3-202ENST00000466541 SLC4A10Q6U841 1118 aa15.35■□□□□ 0.05
SHROOM3-202ENST00000466541 C3orf67Q6ZVT6 689 aa15.35■□□□□ 0.05
SHROOM3-202ENST00000466541 SSH1Q8WYL5 1049 aa15.35■□□□□ 0.05
SHROOM3-202ENST00000466541 RPGRQ92834 1020 aaKnown RBP15.35■□□□□ 0.05
SHROOM3-202ENST00000466541 MASTLQ96GX5 879 aa15.35■□□□□ 0.05
SHROOM3-202ENST00000466541 SH3TC1Q8TE82 1336 aa15.35■□□□□ 0.05
SHROOM3-202ENST00000466541 MRPL50Q8N5N7 158 aaKnown RBP15.34■□□□□ 0.05
SHROOM3-202ENST00000466541 DNAAF4Q8WXU2 420 aa15.34■□□□□ 0.05
SHROOM3-202ENST00000466541 YTHDC1Q96MU7 727 aaKnown RBP15.34■□□□□ 0.05
SHROOM3-202ENST00000466541 NLRP3Q96P20 1036 aa15.34■□□□□ 0.05
SHROOM3-202ENST00000466541 SMC4Q9NTJ3 1288 aa15.34■□□□□ 0.05
SHROOM3-202ENST00000466541 CWC25Q9NXE8 425 aaPredicted RBP15.34■□□□□ 0.05
SHROOM3-202ENST00000466541 PDZRN3Q9UPQ7 1066 aa15.34■□□□□ 0.05
SHROOM3-202ENST00000466541 CHD4Q14839 1912 aa15.33■□□□□ 0.05
SHROOM3-202ENST00000466541 C21orf2O43822 256 aa15.33■□□□□ 0.04
SHROOM3-202ENST00000466541 IGKV5-2P06315 115 aa15.33■□□□□ 0.04
SHROOM3-202ENST00000466541 NPR1P16066 1061 aa15.33■□□□□ 0.04
SHROOM3-202ENST00000466541 STYK1Q6J9G0 422 aa15.33■□□□□ 0.04
SHROOM3-202ENST00000466541 CNKSR1Q969H4 720 aa15.33■□□□□ 0.04
SHROOM3-202ENST00000466541 ZBED9Q6R2W3 1325 aa15.33■□□□□ 0.04
SHROOM3-202ENST00000466541 SLX4Q8IY92 1834 aa15.33■□□□□ 0.04
SHROOM3-202ENST00000466541 ARFGEF1Q9Y6D6 1849 aa15.33■□□□□ 0.04
SHROOM3-202ENST00000466541 IBTKQ9P2D0 1353 aaPredicted RBP15.33■□□□□ 0.04
SHROOM3-202ENST00000466541 LAMB2P55268 1798 aa15.32■□□□□ 0.04
SHROOM3-202ENST00000466541 TRIM28Q13263 835 aaKnown RBP15.32■□□□□ 0.04
SHROOM3-202ENST00000466541 PRPF40BQ6NWY9 871 aaKnown RBP15.32■□□□□ 0.04
SHROOM3-202ENST00000466541 CCDC191Q8NCU4 936 aa15.32■□□□□ 0.04
SHROOM3-202ENST00000466541 IRS4O14654 1257 aaPredicted RBP15.31■□□□□ 0.04
SHROOM3-202ENST00000466541 YY1P25490 414 aa15.31■□□□□ 0.04
SHROOM3-202ENST00000466541 SLC10A5Q5PT55 438 aa15.31■□□□□ 0.04
SHROOM3-202ENST00000466541 ZBTB38Q8NAP3 1195 aaPredicted RBP15.31■□□□□ 0.04
SHROOM3-202ENST00000466541 RBM17Q96I25 401 aaKnown RBP15.31■□□□□ 0.04
SHROOM3-202ENST00000466541 DDX60Q8IY21 1712 aaKnown RBP15.31■□□□□ 0.04
SHROOM3-202ENST00000466541 TAF1P21675 1872 aa15.31■□□□□ 0.04
SHROOM3-202ENST00000466541 KLRG2A4D1S0 409 aaPredicted RBP15.3■□□□□ 0.04
SHROOM3-202ENST00000466541 NEURL1BA8MQ27 555 aa15.3■□□□□ 0.04
SHROOM3-202ENST00000466541 ALDH1L2Q3SY69 923 aa15.3■□□□□ 0.04
SHROOM3-202ENST00000466541 CCDC85AQ96PX6 553 aaPredicted RBP15.3■□□□□ 0.04
SHROOM3-202ENST00000466541 RNF123Q5XPI4 1314 aa15.29■□□□□ 0.04
SHROOM3-202ENST00000466541 PCCAP05165 728 aaPredicted RBP15.29■□□□□ 0.04
SHROOM3-202ENST00000466541 ALDH1B1P30837 517 aa15.29■□□□□ 0.04
SHROOM3-202ENST00000466541 OLFM4Q6UX06 510 aa15.29■□□□□ 0.04
SHROOM3-202ENST00000466541 UBE3BQ7Z3V4 1068 aa15.29■□□□□ 0.04
SHROOM3-202ENST00000466541 NOB1Q9ULX3 412 aaKnown RBP15.29■□□□□ 0.04
SHROOM3-202ENST00000466541 CT47B1P0C2W7 299 aaPredicted RBP15.28■□□□□ 0.04
SHROOM3-202ENST00000466541 RARSP54136 660 aaKnown RBP15.28■□□□□ 0.04
SHROOM3-202ENST00000466541 GCKRQ14397 625 aa15.28■□□□□ 0.04
SHROOM3-202ENST00000466541 CRY2Q49AN0 593 aa15.28■□□□□ 0.04
SHROOM3-202ENST00000466541 DDX46Q7L014 1031 aaKnown RBP15.28■□□□□ 0.04
SHROOM3-202ENST00000466541 LINS1Q8NG48 757 aa15.28■□□□□ 0.04
SHROOM3-202ENST00000466541 CCDC88AQ3V6T2 1871 aa15.27■□□□□ 0.04
SHROOM3-202ENST00000466541 RASSF7Q02833 373 aa15.27■□□□□ 0.04
SHROOM3-202ENST00000466541 BEND3Q5T5X7 828 aa15.27■□□□□ 0.04
SHROOM3-202ENST00000466541 FRAT1Q92837 279 aaPredicted RBP15.27■□□□□ 0.04
SHROOM3-202ENST00000466541 ABCC4O15439 1325 aa15.26■□□□□ 0.03
SHROOM3-202ENST00000466541 PTPRCP08575 1304 aa15.26■□□□□ 0.03
SHROOM3-202ENST00000466541 BCAR3O75815 825 aa15.26■□□□□ 0.03
SHROOM3-202ENST00000466541 SLC51AQ86UW1 340 aa15.26■□□□□ 0.03
SHROOM3-202ENST00000466541 SRCIN1Q9C0H9 1055 aa15.26■□□□□ 0.03
SHROOM3-202ENST00000466541 RIC1Q4ADV7 1423 aa15.26■□□□□ 0.03
SHROOM3-202ENST00000466541 PPEF1O14829 653 aaPredicted RBP15.25■□□□□ 0.03
SHROOM3-202ENST00000466541 HSP90B1P14625 803 aaKnown RBP15.25■□□□□ 0.03
SHROOM3-202ENST00000466541 HOXA10P31260 410 aaPredicted RBP15.25■□□□□ 0.03
SHROOM3-202ENST00000466541 CRAMP1Q96RY5 1269 aa15.25■□□□□ 0.03
SHROOM3-202ENST00000466541 C9orf78Q9NZ63 289 aaPredicted RBP15.25■□□□□ 0.03
SHROOM3-202ENST00000466541 MYH3P11055 1940 aa15.24■□□□□ 0.03
SHROOM3-202ENST00000466541 H7C1W4 665 aa15.24■□□□□ 0.03
SHROOM3-202ENST00000466541 PDE8AO60658 829 aa15.24■□□□□ 0.03
SHROOM3-202ENST00000466541 C9orf131Q5VYM1 1079 aa15.24■□□□□ 0.03
SHROOM3-202ENST00000466541 RNF181Q9P0P0 153 aa15.24■□□□□ 0.03
SHROOM3-202ENST00000466541 SBF1O95248 1867 aa15.23■□□□□ 0.03
SHROOM3-202ENST00000466541 CCDC152Q4G0S7 254 aa15.23■□□□□ 0.03
SHROOM3-202ENST00000466541 CCDC93Q567U6 631 aa15.23■□□□□ 0.03
SHROOM3-202ENST00000466541 ZNF526Q8TF50 670 aaPredicted RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms