RNA–Protein interactions for RNA: ENST00000465627.5

UBA3-208, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 1,388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-208	ENST00000465627	CCDC30	Q5VVM6	783 aa		11.25	□□□□□ -0.61
UBA3-208	ENST00000465627	DZIP1L	Q8IYY4	767 aa	Known RBP	11.25	□□□□□ -0.61
UBA3-208	ENST00000465627	TJP1	Q07157	1748 aa		11.25	□□□□□ -0.61
UBA3-208	ENST00000465627	NHS	Q6T4R5	1651 aa		11.24	□□□□□ -0.61
UBA3-208	ENST00000465627	CHRM1	P11229	460 aa	Predicted RBP	11.24	□□□□□ -0.61
UBA3-208	ENST00000465627	LBX1	P52954	281 aa		11.24	□□□□□ -0.61
UBA3-208	ENST00000465627	MVP	Q14764	893 aa	Known RBP	11.24	□□□□□ -0.61
UBA3-208	ENST00000465627	HDGFL1	Q5TGJ6	251 aa		11.24	□□□□□ -0.61
UBA3-208	ENST00000465627	ATG3	Q9NT62	314 aa		11.24	□□□□□ -0.61
UBA3-208	ENST00000465627	LRRC4B	Q9NT99	713 aa		11.24	□□□□□ -0.61
UBA3-208	ENST00000465627	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.24	□□□□□ -0.61
UBA3-208	ENST00000465627	ST18	O60284	1047 aa		11.23	□□□□□ -0.61
UBA3-208	ENST00000465627	MS4A1	P11836	297 aa		11.23	□□□□□ -0.61
UBA3-208	ENST00000465627	TMEM57	Q8N5G2	664 aa		11.23	□□□□□ -0.61
UBA3-208	ENST00000465627	FMNL2	Q96PY5	1086 aa		11.23	□□□□□ -0.61
UBA3-208	ENST00000465627	TMOD3	Q9NYL9	352 aa		11.23	□□□□□ -0.61
UBA3-208	ENST00000465627	COG6	Q9Y2V7	657 aa		11.23	□□□□□ -0.61
UBA3-208	ENST00000465627	PXDNL	A1KZ92	1463 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	SNRPA1	P09661	255 aa	Known RBP	11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	CTCF	P49711	727 aa	Predicted RBP	11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	FLII	Q13045	1269 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	MKRN3	Q13064	507 aa	Known RBP	11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	AAMP	Q13685	434 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	PROSER3	Q2NL68	480 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	INTS3	Q68E01	1043 aa	Known RBP	11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	CLUAP1	Q96AJ1	413 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	SLC4A9	Q96Q91	983 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	API5	Q9BZZ5	524 aa	Known RBP	11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	CHPF2	Q9P2E5	772 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	ASAP1	Q9ULH1	1129 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	USP16	Q9Y5T5	823 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	KAT6B	Q8WYB5	2073 aa		11.22	□□□□□ -0.61
UBA3-208	ENST00000465627	BTAF1	O14981	1849 aa		11.21	□□□□□ -0.61
UBA3-208	ENST00000465627	PRIM1	P49642	420 aa	Known RBP	11.21	□□□□□ -0.61
UBA3-208	ENST00000465627	MSL1	Q68DK7	614 aa		11.21	□□□□□ -0.61
UBA3-208	ENST00000465627	CDAN1	Q8IWY9	1227 aa		11.21	□□□□□ -0.61
UBA3-208	ENST00000465627	VSIG10	Q8N0Z9	540 aa		11.21	□□□□□ -0.61
UBA3-208	ENST00000465627	CHMP4A	Q9BY43	222 aa		11.21	□□□□□ -0.61
UBA3-208	ENST00000465627	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
UBA3-208	ENST00000465627	SNPH	O15079	494 aa		11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	ZBTB7B	O15156	539 aa	Predicted RBP	11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	CANX	P27824	592 aa	Known RBP	11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	B4GALNT3	Q6L9W6	998 aa		11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	TTC5	Q8N0Z6	440 aa		11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	NECTIN2	Q92692	538 aa		11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	STK31	Q9BXU1	1019 aa		11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	PHAX	Q9H814	394 aa	Known RBP	11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	ZBTB40	Q9NUA8	1239 aa		11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	DBF4	Q9UBU7	674 aa	Predicted RBP	11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	MKRN1	Q9UHC7	482 aa	Known RBP	11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	COL5A3	P25940	1745 aa	Predicted RBP	11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	ERBB4	Q15303	1308 aa		11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	KDM2B	Q8NHM5	1336 aa		11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.2	□□□□□ -0.62
UBA3-208	ENST00000465627	NBPF26	B4DH59	902 aa		11.19	□□□□□ -0.62
UBA3-208	ENST00000465627	EIF2S2	P20042	333 aa	Known RBP	11.19	□□□□□ -0.62
UBA3-208	ENST00000465627	NBPF10	Q6P3W6	841 aa	Known RBP	11.19	□□□□□ -0.62
UBA3-208	ENST00000465627	NBPF15	Q8N660	670 aa		11.19	□□□□□ -0.62
UBA3-208	ENST00000465627	CD2AP	Q9Y5K6	639 aa		11.19	□□□□□ -0.62
UBA3-208	ENST00000465627	CUL9	Q8IWT3	2517 aa		11.19	□□□□□ -0.62
UBA3-208	ENST00000465627	LY75	O60449	1722 aa		11.19	□□□□□ -0.62
UBA3-208	ENST00000465627	ANXA1	P04083	346 aa		11.18	□□□□□ -0.62
UBA3-208	ENST00000465627	FTSJ3	Q8IY81	847 aa	Known RBP	11.18	□□□□□ -0.62
UBA3-208	ENST00000465627	SMC1B	Q8NDV3	1235 aa		11.18	□□□□□ -0.62
UBA3-208	ENST00000465627	RRAGC	Q9HB90	399 aa		11.18	□□□□□ -0.62
UBA3-208	ENST00000465627	DDX19B	Q9UMR2	479 aa		11.18	□□□□□ -0.62
UBA3-208	ENST00000465627	PCDHB15	Q9Y5E8	787 aa		11.18	□□□□□ -0.62
UBA3-208	ENST00000465627		F6X3S4	739 aa		11.17	□□□□□ -0.62
UBA3-208	ENST00000465627	PSEN1	P49768	467 aa		11.17	□□□□□ -0.62
UBA3-208	ENST00000465627	HYPK	Q9NX55	129 aa		11.17	□□□□□ -0.62
UBA3-208	ENST00000465627	ARFGEF2	Q9Y6D5	1785 aa		11.17	□□□□□ -0.62
UBA3-208	ENST00000465627	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.17	□□□□□ -0.62
UBA3-208	ENST00000465627	PTCD1	O75127	700 aa	Known RBP	11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	C3orf67	Q6ZVT6	689 aa		11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	PDCD7	Q8N8D1	485 aa	Known RBP	11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	ACSBG1	Q96GR2	724 aa		11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	MYH14	Q7Z406	1995 aa	Known RBP	11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	DLL1	O00548	723 aa		11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	HSPA8	P11142	646 aa	Known RBP	11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	CYP19A1	P11511	503 aa	Predicted RBP	11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	KCNQ4	P56696	695 aa		11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	FKBP5	Q13451	457 aa	Predicted RBP	11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	ITPRIP	Q8IWB1	547 aa		11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	DNAJC10	Q8IXB1	793 aa		11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	SPOCK2	Q92563	424 aa		11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	CCDC136	Q96JN2	1154 aa		11.16	□□□□□ -0.62
UBA3-208	ENST00000465627	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.16	□□□□□ -0.62
UBA3-208	ENST00000465627		A0A0C4DFX4	3053 aa		11.15	□□□□□ -0.62
UBA3-208	ENST00000465627	PI4KAP2	A4QPH2	592 aa		11.15	□□□□□ -0.63
UBA3-208	ENST00000465627	CCT4	P50991	539 aa	Known RBP	11.15	□□□□□ -0.63
UBA3-208	ENST00000465627	BEND3	Q5T5X7	828 aa		11.15	□□□□□ -0.63
UBA3-208	ENST00000465627	PRPF38B	Q5VTL8	546 aa	Known RBP	11.15	□□□□□ -0.63
UBA3-208	ENST00000465627	PI4KAP1	Q8N8J0	262 aa		11.15	□□□□□ -0.63
UBA3-208	ENST00000465627	AIDA	Q96BJ3	306 aa		11.15	□□□□□ -0.63
UBA3-208	ENST00000465627	TFCP2L1	Q9NZI6	479 aa		11.15	□□□□□ -0.63
UBA3-208	ENST00000465627	PALLD	Q8WX93	1383 aa		11.14	□□□□□ -0.63
UBA3-208	ENST00000465627	TAF1L	Q8IZX4	1826 aa		11.14	□□□□□ -0.63
UBA3-208	ENST00000465627	C10orf71	Q711Q0	1435 aa		11.14	□□□□□ -0.63

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