RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 IL6STP40189 918 aaPredicted RBP13.18□□□□□ -0.3
USP39-212ENST00000465514 TTC5Q8N0Z6 440 aa13.18□□□□□ -0.3
USP39-212ENST00000465514 GCC1Q96CN9 775 aa13.18□□□□□ -0.3
USP39-212ENST00000465514 GLIS2Q9BZE0 524 aaPredicted RBP13.18□□□□□ -0.3
USP39-212ENST00000465514 KLRG2A4D1S0 409 aaPredicted RBP13.17□□□□□ -0.3
USP39-212ENST00000465514 NBPF15Q8N660 670 aa13.17□□□□□ -0.3
USP39-212ENST00000465514 HEG1Q9ULI3 1381 aa13.17□□□□□ -0.3
USP39-212ENST00000465514 KIF7Q2M1P5 1343 aa13.16□□□□□ -0.3
USP39-212ENST00000465514 DZIP3Q86Y13 1208 aaKnown RBP13.16□□□□□ -0.3
USP39-212ENST00000465514 ZNF496Q96IT1 587 aaPredicted RBP13.16□□□□□ -0.3
USP39-212ENST00000465514 ADARB2Q9NS39 739 aaKnown RBP13.16□□□□□ -0.3
USP39-212ENST00000465514 SAGE1Q9NXZ1 904 aa13.16□□□□□ -0.3
USP39-212ENST00000465514 POLR2AP24928 1970 aaKnown RBP13.16□□□□□ -0.3
USP39-212ENST00000465514 A1BGP04217 495 aa13.15□□□□□ -0.3
USP39-212ENST00000465514 HABP4Q5JVS0 413 aaKnown RBP13.15□□□□□ -0.3
USP39-212ENST00000465514 NPM2Q86SE8 214 aaKnown RBP13.15□□□□□ -0.3
USP39-212ENST00000465514 LARGE2Q8N3Y3 721 aa13.15□□□□□ -0.3
USP39-212ENST00000465514 GPRC5DQ9NZD1 345 aa13.15□□□□□ -0.3
USP39-212ENST00000465514 HMOX1P09601 288 aa13.14□□□□□ -0.31
USP39-212ENST00000465514 ALDH1B1P30837 517 aa13.14□□□□□ -0.31
USP39-212ENST00000465514 HUNKP57058 714 aa13.14□□□□□ -0.31
USP39-212ENST00000465514 CTU1Q7Z7A3 348 aaKnown RBP13.14□□□□□ -0.31
USP39-212ENST00000465514 PER1O15534 1290 aaPredicted RBP13.13□□□□□ -0.31
USP39-212ENST00000465514 TRPA1O75762 1119 aa13.13□□□□□ -0.31
USP39-212ENST00000465514 TEX13AQ9BXU3 409 aaPredicted RBP13.13□□□□□ -0.31
USP39-212ENST00000465514 HPS5Q9UPZ3 1129 aa13.13□□□□□ -0.31
USP39-212ENST00000465514 FAM177BA6PVY3 158 aa13.12□□□□□ -0.31
USP39-212ENST00000465514 FAM155AB1AL88 458 aaPredicted RBP13.12□□□□□ -0.31
USP39-212ENST00000465514 PIP4K2AP48426 406 aaPredicted RBP13.12□□□□□ -0.31
USP39-212ENST00000465514 CC2D1BQ5T0F9 858 aaKnown RBP13.12□□□□□ -0.31
USP39-212ENST00000465514 TPTE2Q6XPS3 522 aa13.12□□□□□ -0.31
USP39-212ENST00000465514 SLC51AQ86UW1 340 aa13.12□□□□□ -0.31
USP39-212ENST00000465514 NIM1KQ8IY84 436 aa13.12□□□□□ -0.31
USP39-212ENST00000465514 RNF186Q9NXI6 227 aa13.12□□□□□ -0.31
USP39-212ENST00000465514 U3KPZ7 1027 aaPredicted RBP13.12□□□□□ -0.31
USP39-212ENST00000465514 SZT2Q5T011 3432 aa13.11□□□□□ -0.31
USP39-212ENST00000465514 DIAPH1O60610 1272 aaKnown RBP13.11□□□□□ -0.31
USP39-212ENST00000465514 MTHFSDQ2M296 383 aaKnown RBP13.11□□□□□ -0.31
USP39-212ENST00000465514 ZNF790Q6PG37 636 aa13.11□□□□□ -0.31
USP39-212ENST00000465514 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
USP39-212ENST00000465514 PGAP2Q9UHJ9 254 aa13.11□□□□□ -0.31
USP39-212ENST00000465514 NIP7Q9Y221 180 aaKnown RBP eCLIP13.11□□□□□ -0.31
USP39-212ENST00000465514 ZNF652Q9Y2D9 606 aa13.11□□□□□ -0.31
USP39-212ENST00000465514 CENPFP49454 3210 aa13.11□□□□□ -0.31
USP39-212ENST00000465514 ABCC12Q96J65 1359 aa13.1□□□□□ -0.31
USP39-212ENST00000465514 NPC1L1Q9UHC9 1359 aa13.1□□□□□ -0.31
USP39-212ENST00000465514 HTTP42858 3142 aa13.1□□□□□ -0.31
USP39-212ENST00000465514 GMPSP49915 693 aaPredicted RBP13.1□□□□□ -0.31
USP39-212ENST00000465514 KIF23Q02241 960 aaPredicted RBP13.1□□□□□ -0.31
USP39-212ENST00000465514 CC2D2BQ6DHV5 1058 aa13.1□□□□□ -0.31
USP39-212ENST00000465514 CDC37L1Q7L3B6 337 aa13.1□□□□□ -0.31
USP39-212ENST00000465514 NUP98P52948 1817 aa13.1□□□□□ -0.31
USP39-212ENST00000465514 BRCA2P51587 3418 aa13.09□□□□□ -0.31
USP39-212ENST00000465514 PPIP5K2O43314 1243 aa13.09□□□□□ -0.31
USP39-212ENST00000465514 CRY2Q49AN0 593 aa13.09□□□□□ -0.31
USP39-212ENST00000465514 RGMBQ6NW40 437 aa13.09□□□□□ -0.31
USP39-212ENST00000465514 DLK2Q6UY11 383 aa13.09□□□□□ -0.31
USP39-212ENST00000465514 TRPM4Q8TD43 1214 aa13.09□□□□□ -0.31
USP39-212ENST00000465514 FMNL2Q96PY5 1086 aa13.09□□□□□ -0.31
USP39-212ENST00000465514 HIRAP54198 1017 aaPredicted RBP13.08□□□□□ -0.32
USP39-212ENST00000465514 CNGB1Q14028 1251 aaPredicted RBP13.08□□□□□ -0.32
USP39-212ENST00000465514 AOC3Q16853 763 aa13.08□□□□□ -0.32
USP39-212ENST00000465514 ZC3H15Q8WU90 426 aaKnown RBP13.08□□□□□ -0.32
USP39-212ENST00000465514 RIC1Q4ADV7 1423 aa13.07□□□□□ -0.32
USP39-212ENST00000465514 GTF2E1P29083 439 aaPredicted RBP13.07□□□□□ -0.32
USP39-212ENST00000465514 FXR1P51114 621 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP39-212ENST00000465514 CXCL9Q07325 125 aa13.07□□□□□ -0.32
USP39-212ENST00000465514 TEFQ10587 303 aa13.07□□□□□ -0.32
USP39-212ENST00000465514 USP48Q86UV5 1035 aa13.07□□□□□ -0.32
USP39-212ENST00000465514 CDHR2Q9BYE9 1310 aa13.07□□□□□ -0.32
USP39-212ENST00000465514 TCERG1O14776 1098 aaKnown RBP13.06□□□□□ -0.32
USP39-212ENST00000465514 ZNF157P51786 506 aaPredicted RBP13.06□□□□□ -0.32
USP39-212ENST00000465514 GRIPAP1Q4V328 841 aa13.06□□□□□ -0.32
USP39-212ENST00000465514 RPGRQ92834 1020 aaKnown RBP13.06□□□□□ -0.32
USP39-212ENST00000465514 CCDC102AQ96A19 550 aa13.06□□□□□ -0.32
USP39-212ENST00000465514 CEP290O15078 2479 aa13.05□□□□□ -0.32
USP39-212ENST00000465514 COL3A1P02461 1466 aaPredicted RBP13.05□□□□□ -0.32
USP39-212ENST00000465514 RBBP6Q7Z6E9 1792 aaKnown RBP13.05□□□□□ -0.32
USP39-212ENST00000465514 TRIOBPQ9H2D6 2365 aa13.05□□□□□ -0.32
USP39-212ENST00000465514 SHTN1A0MZ66 631 aa13.05□□□□□ -0.32
USP39-212ENST00000465514 PPEF1O14829 653 aaPredicted RBP13.05□□□□□ -0.32
USP39-212ENST00000465514 U2SURPO15042 1029 aaKnown RBP13.05□□□□□ -0.32
USP39-212ENST00000465514 PKN2Q16513 984 aaKnown RBP13.05□□□□□ -0.32
USP39-212ENST00000465514 NUTM1Q86Y26 1132 aa13.05□□□□□ -0.32
USP39-212ENST00000465514 CSRNP1Q96S65 589 aa13.05□□□□□ -0.32
USP39-212ENST00000465514 BCL2L13Q9BXK5 485 aa13.05□□□□□ -0.32
USP39-212ENST00000465514 GBA2Q9HCG7 927 aaPredicted RBP13.05□□□□□ -0.32
USP39-212ENST00000465514 ZNRF3Q9ULT6 936 aa13.05□□□□□ -0.32
USP39-212ENST00000465514 LAMB4A4D0S4 1761 aa13.04□□□□□ -0.32
USP39-212ENST00000465514 PAPPA2Q9BXP8 1791 aa13.04□□□□□ -0.32
USP39-212ENST00000465514 PRAMEF22A3QJZ6 481 aa13.04□□□□□ -0.32
USP39-212ENST00000465514 KCNQ3O43525 872 aa13.04□□□□□ -0.32
USP39-212ENST00000465514 SLC10A3P09131 477 aa13.04□□□□□ -0.32
USP39-212ENST00000465514 HOXA10P31260 410 aaPredicted RBP13.04□□□□□ -0.32
USP39-212ENST00000465514 C2orf69Q8N8R5 385 aa13.04□□□□□ -0.32
USP39-212ENST00000465514 IL17REQ8NFR9 667 aa13.04□□□□□ -0.32
USP39-212ENST00000465514 USP16Q9Y5T5 823 aa13.04□□□□□ -0.32
USP39-212ENST00000465514 CUL9Q8IWT3 2517 aa13.04□□□□□ -0.32
USP39-212ENST00000465514 LAMB2P55268 1798 aa13.03□□□□□ -0.32
USP39-212ENST00000465514 GNAT3A8MTJ3 354 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms