RNA–Protein interactions for RNA: ENST00000462817.5

LIMS1-211, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-211ENST00000462817 SALL2Q9Y467 1007 aaPredicted RBP20.05■□□□□ 0.8
LIMS1-211ENST00000462817 KIF3CO14782 793 aa20.04■□□□□ 0.8
LIMS1-211ENST00000462817 WWC1Q8IX03 1113 aa20.04■□□□□ 0.8
LIMS1-211ENST00000462817 FAM9BQ8IZU0 186 aa20.04■□□□□ 0.8
LIMS1-211ENST00000462817 TRMT112Q9UI30 125 aaKnown RBP20.04■□□□□ 0.8
LIMS1-211ENST00000462817 GOLGA2Q08379 1002 aa20.03■□□□□ 0.8
LIMS1-211ENST00000462817 CRY2Q49AN0 593 aa20.03■□□□□ 0.8
LIMS1-211ENST00000462817 CCDC30Q5VVM6 783 aa20.03■□□□□ 0.8
LIMS1-211ENST00000462817 DPY19L2Q6NUT2 758 aa20.03■□□□□ 0.8
LIMS1-211ENST00000462817 RBM17Q96I25 401 aaKnown RBP20.03■□□□□ 0.8
LIMS1-211ENST00000462817 TMX4Q9H1E5 349 aaPredicted RBP20.03■□□□□ 0.8
LIMS1-211ENST00000462817 RNF123Q5XPI4 1314 aa20.02■□□□□ 0.8
LIMS1-211ENST00000462817 LTBP3Q9NS15 1303 aa20.02■□□□□ 0.8
LIMS1-211ENST00000462817 RIC3Q7Z5B4 369 aa20.02■□□□□ 0.8
LIMS1-211ENST00000462817 NLRP10Q86W26 655 aa20.02■□□□□ 0.8
LIMS1-211ENST00000462817 RTKN2Q8IZC4 609 aa20.02■□□□□ 0.8
LIMS1-211ENST00000462817 C8orf58Q8NAV2 365 aa20.02■□□□□ 0.8
LIMS1-211ENST00000462817 TSR2Q969E8 191 aaKnown RBP20.02■□□□□ 0.8
LIMS1-211ENST00000462817 RRAGCQ9HB90 399 aa20.02■□□□□ 0.8
LIMS1-211ENST00000462817 CCDC88AQ3V6T2 1871 aa20.01■□□□□ 0.79
LIMS1-211ENST00000462817 PRELPP51888 382 aa20.01■□□□□ 0.79
LIMS1-211ENST00000462817 C7orf43Q8WVR3 580 aa20.01■□□□□ 0.79
LIMS1-211ENST00000462817 ARFGEF2Q9Y6D5 1785 aa20■□□□□ 0.79
LIMS1-211ENST00000462817 GLTPD2A6NH11 291 aa20■□□□□ 0.79
LIMS1-211ENST00000462817 TOMM70O94826 608 aa20■□□□□ 0.79
LIMS1-211ENST00000462817 NCBP3Q53F19 620 aaKnown RBP20■□□□□ 0.79
LIMS1-211ENST00000462817 FER1L6Q2WGJ9 1857 aa20■□□□□ 0.79
LIMS1-211ENST00000462817 RIC1Q4ADV7 1423 aa20■□□□□ 0.79
LIMS1-211ENST00000462817 SH3TC1Q8TE82 1336 aa20■□□□□ 0.79
LIMS1-211ENST00000462817 TCERG1O14776 1098 aaKnown RBP19.99■□□□□ 0.79
LIMS1-211ENST00000462817 DDX58O95786 925 aaKnown RBP19.99■□□□□ 0.79
LIMS1-211ENST00000462817 HOXA10P31260 410 aaPredicted RBP19.99■□□□□ 0.79
LIMS1-211ENST00000462817 FKBP4Q02790 459 aaKnown RBP eCLIP19.99■□□□□ 0.79
LIMS1-211ENST00000462817 SLC10A5Q5PT55 438 aa19.99■□□□□ 0.79
LIMS1-211ENST00000462817 ZNF428Q96B54 188 aa19.99■□□□□ 0.79
LIMS1-211ENST00000462817 CRAMP1Q96RY5 1269 aa19.99■□□□□ 0.79
LIMS1-211ENST00000462817 STK31Q9BXU1 1019 aa19.99■□□□□ 0.79
LIMS1-211ENST00000462817 TNRC6CQ9HCJ0 1690 aaKnown RBP19.99■□□□□ 0.79
LIMS1-211ENST00000462817 IL16Q14005 1332 aa19.99■□□□□ 0.79
LIMS1-211ENST00000462817 ATP5J2-PTCD1G3V325 749 aa19.98■□□□□ 0.79
LIMS1-211ENST00000462817 HCLS1P14317 486 aaPredicted RBP19.98■□□□□ 0.79
LIMS1-211ENST00000462817 CC2D2BQ6DHV5 1058 aa19.98■□□□□ 0.79
LIMS1-211ENST00000462817 OLFM4Q6UX06 510 aa19.98■□□□□ 0.79
LIMS1-211ENST00000462817 PHAXQ9H814 394 aaKnown RBP19.98■□□□□ 0.79
LIMS1-211ENST00000462817 ANKRD36CQ5JPF3 1778 aa19.98■□□□□ 0.79
LIMS1-211ENST00000462817 PPEF1O14829 653 aaPredicted RBP19.97■□□□□ 0.79
LIMS1-211ENST00000462817 TWISTNBQ3B726 338 aaPredicted RBP19.97■□□□□ 0.79
LIMS1-211ENST00000462817 TSPYL6Q8N831 410 aa19.97■□□□□ 0.79
LIMS1-211ENST00000462817 C3orf67Q6ZVT6 689 aa19.96■□□□□ 0.79
LIMS1-211ENST00000462817 WDR63Q8IWG1 891 aa19.96■□□□□ 0.79
LIMS1-211ENST00000462817 ZNF277Q9NRM2 450 aaPredicted RBP19.96■□□□□ 0.79
LIMS1-211ENST00000462817 TIAM2Q8IVF5 1701 aa19.96■□□□□ 0.79
LIMS1-211ENST00000462817 VEGFAP15692 232 aaPredicted RBP19.95■□□□□ 0.78
LIMS1-211ENST00000462817 GRIPAP1Q4V328 841 aa19.95■□□□□ 0.78
LIMS1-211ENST00000462817 DDX46Q7L014 1031 aaKnown RBP19.95■□□□□ 0.78
LIMS1-211ENST00000462817 SYNE4Q8N205 404 aa19.95■□□□□ 0.78
LIMS1-211ENST00000462817 ISCA1Q9BUE6 129 aa19.95■□□□□ 0.78
LIMS1-211ENST00000462817 HSPA6P17066 643 aa19.94■□□□□ 0.78
LIMS1-211ENST00000462817 RTL5Q5HYW3 569 aaPredicted RBP19.94■□□□□ 0.78
LIMS1-211ENST00000462817 RBM46Q8TBY0 533 aaKnown RBP19.94■□□□□ 0.78
LIMS1-211ENST00000462817 FAM89AQ96GI7 184 aa19.94■□□□□ 0.78
LIMS1-211ENST00000462817 MYD88Q99836 296 aa19.94■□□□□ 0.78
LIMS1-211ENST00000462817 JDP2Q8WYK2 163 aa19.93■□□□□ 0.78
LIMS1-211ENST00000462817 DICER1Q9UPY3 1922 aaKnown RBP19.92■□□□□ 0.78
LIMS1-211ENST00000462817 IARSP41252 1262 aaKnown RBP19.92■□□□□ 0.78
LIMS1-211ENST00000462817 TRIM28Q13263 835 aaKnown RBP19.92■□□□□ 0.78
LIMS1-211ENST00000462817 PSMD1Q99460 953 aa19.92■□□□□ 0.78
LIMS1-211ENST00000462817 ABCC4O15439 1325 aa19.92■□□□□ 0.78
LIMS1-211ENST00000462817 BBOX1O75936 387 aa19.91■□□□□ 0.78
LIMS1-211ENST00000462817 HSP90B1P14625 803 aaKnown RBP19.91■□□□□ 0.78
LIMS1-211ENST00000462817 MYH16Q9H6N6 1097 aa19.91■□□□□ 0.78
LIMS1-211ENST00000462817 FANCIQ9NVI1 1328 aa19.91■□□□□ 0.78
LIMS1-211ENST00000462817 IRS4O14654 1257 aaPredicted RBP19.9■□□□□ 0.78
LIMS1-211ENST00000462817 DDNO94850 711 aaPredicted RBP19.9■□□□□ 0.78
LIMS1-211ENST00000462817 SLC4A2P04920 1241 aa19.9■□□□□ 0.78
LIMS1-211ENST00000462817 NEXNQ0ZGT2 675 aa19.9■□□□□ 0.78
LIMS1-211ENST00000462817 FSTL1Q12841 308 aa19.89■□□□□ 0.77
LIMS1-211ENST00000462817 KSR2Q6VAB6 950 aa19.89■□□□□ 0.77
LIMS1-211ENST00000462817 LARGE2Q8N3Y3 721 aa19.89■□□□□ 0.77
LIMS1-211ENST00000462817 ZBTB38Q8NAP3 1195 aaPredicted RBP19.89■□□□□ 0.77
LIMS1-211ENST00000462817 CCDC191Q8NCU4 936 aa19.89■□□□□ 0.77
LIMS1-211ENST00000462817 SMC1BQ8NDV3 1235 aa19.89■□□□□ 0.77
LIMS1-211ENST00000462817 METTL22Q9BUU2 404 aaPredicted RBP19.89■□□□□ 0.77
LIMS1-211ENST00000462817 CWC25Q9NXE8 425 aaPredicted RBP19.89■□□□□ 0.77
LIMS1-211ENST00000462817 MAP3K2Q9Y2U5 619 aa19.89■□□□□ 0.77
LIMS1-211ENST00000462817 ATP6V0A2Q9Y487 856 aa19.89■□□□□ 0.77
LIMS1-211ENST00000462817 PI4KAP2A4QPH2 592 aa19.88■□□□□ 0.77
LIMS1-211ENST00000462817 GRAPQ13588 217 aa19.88■□□□□ 0.77
LIMS1-211ENST00000462817 PI4KAP1Q8N8J0 262 aa19.88■□□□□ 0.77
LIMS1-211ENST00000462817 GRAPLQ8TC17 118 aaPredicted RBP19.88■□□□□ 0.77
LIMS1-211ENST00000462817 EIF6P56537 245 aaKnown RBP19.87■□□□□ 0.77
LIMS1-211ENST00000462817 EXOSC9Q06265 439 aaKnown RBP19.87■□□□□ 0.77
LIMS1-211ENST00000462817 DPP8Q6V1X1 898 aaPredicted RBP19.87■□□□□ 0.77
LIMS1-211ENST00000462817 SP8Q8IXZ3 490 aa19.87■□□□□ 0.77
LIMS1-211ENST00000462817 SUPT20HQ8NEM7 779 aa19.87■□□□□ 0.77
LIMS1-211ENST00000462817 IQCA1LA6NCM1 817 aa19.86■□□□□ 0.77
LIMS1-211ENST00000462817 APLP1P51693 650 aa19.86■□□□□ 0.77
LIMS1-211ENST00000462817 TMC4Q7Z404 712 aa19.86■□□□□ 0.77
LIMS1-211ENST00000462817 MPNDQ8N594 471 aa19.86■□□□□ 0.77
LIMS1-211ENST00000462817 PPIP5K2O43314 1243 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms