RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SETD1BQ9UPS6 1966 aaKnown RBP13.77□□□□□ -0.21
NPHP4-204ENST00000460696 PTCH1Q13635 1447 aa13.77□□□□□ -0.21
NPHP4-204ENST00000460696 GPTP24298 496 aa13.77□□□□□ -0.21
NPHP4-204ENST00000460696 RBM10P98175 930 aaKnown RBP13.77□□□□□ -0.21
NPHP4-204ENST00000460696 GUCY1B3Q02153 619 aa13.77□□□□□ -0.21
NPHP4-204ENST00000460696 RRP12Q5JTH9 1297 aaKnown RBP13.77□□□□□ -0.21
NPHP4-204ENST00000460696 VPS37DQ86XT2 251 aa13.77□□□□□ -0.21
NPHP4-204ENST00000460696 KINO60870 393 aaKnown RBP13.76□□□□□ -0.21
NPHP4-204ENST00000460696 TRIM37O94972 964 aa13.76□□□□□ -0.21
NPHP4-204ENST00000460696 IL2RBP14784 551 aa13.76□□□□□ -0.21
NPHP4-204ENST00000460696 ATP2B1P20020 1258 aa13.76□□□□□ -0.21
NPHP4-204ENST00000460696 ME1P48163 572 aa13.76□□□□□ -0.21
NPHP4-204ENST00000460696 NUP62CLQ9H1M0 184 aa13.76□□□□□ -0.21
NPHP4-204ENST00000460696 RRAGDQ9NQL2 400 aaPredicted RBP13.76□□□□□ -0.21
NPHP4-204ENST00000460696 IQSEC2Q5JU85 1478 aa13.76□□□□□ -0.21
NPHP4-204ENST00000460696 ZSCAN22P10073 491 aaPredicted RBP13.76□□□□□ -0.21
NPHP4-204ENST00000460696 CCT2P78371 535 aaKnown RBP13.76□□□□□ -0.21
NPHP4-204ENST00000460696 AKAP17AQ02040 695 aaKnown RBP13.76□□□□□ -0.21
NPHP4-204ENST00000460696 ZNF790Q6PG37 636 aa13.76□□□□□ -0.21
NPHP4-204ENST00000460696 BABAM1Q9NWV8 329 aa13.76□□□□□ -0.21
NPHP4-204ENST00000460696 IDH1O75874 414 aaKnown RBP13.75□□□□□ -0.21
NPHP4-204ENST00000460696 CCDC183Q5T5S1 534 aa13.75□□□□□ -0.21
NPHP4-204ENST00000460696 SSH3Q8TE77 659 aa13.75□□□□□ -0.21
NPHP4-204ENST00000460696 TRPC5Q9UL62 973 aaPredicted RBP13.75□□□□□ -0.21
NPHP4-204ENST00000460696 TBC1D2BQ9UPU7 963 aa13.75□□□□□ -0.21
NPHP4-204ENST00000460696 CKAP2LQ8IYA6 745 aa13.75□□□□□ -0.21
NPHP4-204ENST00000460696 DEPDC5O75140 1603 aa13.75□□□□□ -0.21
NPHP4-204ENST00000460696 HCLS1P14317 486 aaPredicted RBP13.75□□□□□ -0.21
NPHP4-204ENST00000460696 TTC41PQ6P2S7 1318 aa13.75□□□□□ -0.21
NPHP4-204ENST00000460696 CLTCQ00610 1675 aaKnown RBP13.75□□□□□ -0.21
NPHP4-204ENST00000460696 SGSM2O43147 1006 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 STK38Q15208 465 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 LRSAM1Q6UWE0 723 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 TFCP2L1Q9NZI6 479 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 PIK3C2BO00750 1634 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 METTL24Q5JXM2 366 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 GIMAP6Q6P9H5 292 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 SUCLG2Q96I99 432 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 NDUFB9Q9Y6M9 179 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 DNM1Q05193 864 aaKnown RBP13.74□□□□□ -0.21
NPHP4-204ENST00000460696 PROSER3Q2NL68 480 aa13.74□□□□□ -0.21
NPHP4-204ENST00000460696 GIGYF1O75420 1035 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-204ENST00000460696 HOXB7P09629 217 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 GAS2L3Q86XJ1 694 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 FAM227BQ96M60 508 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 CWC25Q9NXE8 425 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-204ENST00000460696 MED14O60244 1454 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 PRAMEF22A3QJZ6 481 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 HAND2P61296 217 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 NEK1Q96PY6 1258 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 SNX14Q9Y5W7 946 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 SYT1P21579 422 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 MAP3K11Q16584 847 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 RASSF8Q8NHQ8 419 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 BRF1Q92994 677 aa13.73□□□□□ -0.21
NPHP4-204ENST00000460696 ZNF496Q96IT1 587 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-204ENST00000460696 CPSF1Q10570 1443 aaKnown RBP13.73□□□□□ -0.21
NPHP4-204ENST00000460696 TULP1O00294 542 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-204ENST00000460696 INTS4Q96HW7 963 aaKnown RBP13.73□□□□□ -0.21
NPHP4-204ENST00000460696 MROH1Q8NDA8 1641 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 BEND3Q5T5X7 828 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 CREB3L3Q68CJ9 461 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 ZNF772Q68DY9 489 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-204ENST00000460696 LMBRD1Q9NUN5 540 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 U3KPZ7 1027 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-204ENST00000460696 STARD3NLO95772 234 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 TFCP2Q12800 502 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 RAB11FIP4Q86YS3 637 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 SEPT12Q8IYM1 358 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 AK7Q96M32 723 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 MPHOSPH8Q99549 860 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 ERICH2A1L162 156 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 UBE2HP62256 183 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 IFIT5Q13325 482 aaKnown RBP13.72□□□□□ -0.21
NPHP4-204ENST00000460696 EDC3Q96F86 508 aaKnown RBP13.72□□□□□ -0.21
NPHP4-204ENST00000460696 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.72□□□□□ -0.21
NPHP4-204ENST00000460696 RBSNQ9H1K0 784 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 FRMPD1Q5SYB0 1578 aa13.72□□□□□ -0.21
NPHP4-204ENST00000460696 IBTKQ9P2D0 1353 aaPredicted RBP13.71□□□□□ -0.21
NPHP4-204ENST00000460696 DHX16O60231 1041 aaKnown RBP13.71□□□□□ -0.21
NPHP4-204ENST00000460696 CLCN1P35523 988 aa13.71□□□□□ -0.21
NPHP4-204ENST00000460696 VSIG10Q8N0Z9 540 aa13.71□□□□□ -0.21
NPHP4-204ENST00000460696 CCDC34Q96HJ3 373 aa13.71□□□□□ -0.21
NPHP4-204ENST00000460696 ZNF396Q96N95 335 aaPredicted RBP13.71□□□□□ -0.21
NPHP4-204ENST00000460696 CFAP45Q9UL16 551 aa13.71□□□□□ -0.21
NPHP4-204ENST00000460696 SCAND2PQ9GZW5 306 aaPredicted RBP13.71□□□□□ -0.21
NPHP4-204ENST00000460696 F13A1P00488 732 aa13.71□□□□□ -0.22
NPHP4-204ENST00000460696 CTNNA3Q9UI47 895 aa13.71□□□□□ -0.22
NPHP4-204ENST00000460696 CCDC171Q6TFL3 1326 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 RAD50Q92878 1312 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 USP16Q9Y5T5 823 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 ZC3H13Q5T200 1668 aaKnown RBP13.7□□□□□ -0.22
NPHP4-204ENST00000460696 TIMM10P62072 90 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 SAFBQ15424 915 aaKnown RBP eCLIP13.7□□□□□ -0.22
NPHP4-204ENST00000460696 IMMTQ16891 758 aaKnown RBP13.7□□□□□ -0.22
NPHP4-204ENST00000460696 FAM173BQ6P4H8 233 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 CPS1P31327 1500 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 HSPA4P34932 840 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 FBXO41Q8TF61 875 aa13.7□□□□□ -0.22
NPHP4-204ENST00000460696 DCAF5Q96JK2 942 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms