RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 NEK4P51957 841 aa14.2□□□□□ -0.14
SYNE2-207ENST00000458046 CAVIN1Q6NZI2 390 aaKnown RBP14.2□□□□□ -0.14
SYNE2-207ENST00000458046 RILPL2Q969X0 211 aa14.2□□□□□ -0.14
SYNE2-207ENST00000458046 PTPRUQ92729 1446 aa14.2□□□□□ -0.14
SYNE2-207ENST00000458046 PRPF40AO75400 957 aaKnown RBP14.2□□□□□ -0.14
SYNE2-207ENST00000458046 LRRCC1Q9C099 1032 aa14.2□□□□□ -0.14
SYNE2-207ENST00000458046 OSBPL3Q9H4L5 887 aa14.2□□□□□ -0.14
SYNE2-207ENST00000458046 LMBRD1Q9NUN5 540 aa14.2□□□□□ -0.14
SYNE2-207ENST00000458046 FLT4P35916 1363 aa14.2□□□□□ -0.14
SYNE2-207ENST00000458046 TRIM6-TRIM34B2RNG4 842 aa14.19□□□□□ -0.14
SYNE2-207ENST00000458046 SBNO1A3KN83 1393 aa14.19□□□□□ -0.14
SYNE2-207ENST00000458046 NASPP49321 788 aaPredicted RBP14.19□□□□□ -0.14
SYNE2-207ENST00000458046 CCDC30Q5VVM6 783 aa14.19□□□□□ -0.14
SYNE2-207ENST00000458046 FAN1Q9Y2M0 1017 aa14.19□□□□□ -0.14
SYNE2-207ENST00000458046 ZDHHC9Q9Y397 364 aa14.19□□□□□ -0.14
SYNE2-207ENST00000458046 EID1Q9Y6B2 187 aa14.19□□□□□ -0.14
SYNE2-207ENST00000458046 TTC21AQ8NDW8 1320 aa14.19□□□□□ -0.14
SYNE2-207ENST00000458046 SSH2Q76I76 1423 aa14.18□□□□□ -0.14
SYNE2-207ENST00000458046 GNAT3A8MTJ3 354 aa14.18□□□□□ -0.14
SYNE2-207ENST00000458046 LRRFIP2Q9Y608 721 aaKnown RBP14.18□□□□□ -0.14
SYNE2-207ENST00000458046 PLEKHG1Q9ULL1 1385 aa14.18□□□□□ -0.14
SYNE2-207ENST00000458046 IGSF1Q8N6C5 1336 aa14.18□□□□□ -0.14
SYNE2-207ENST00000458046 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.18□□□□□ -0.14
SYNE2-207ENST00000458046 MX1P20591 662 aa14.18□□□□□ -0.14
SYNE2-207ENST00000458046 ZC3H6P61129 1189 aaKnown RBP14.18□□□□□ -0.14
SYNE2-207ENST00000458046 ATP8B2P98198 1209 aa14.18□□□□□ -0.14
SYNE2-207ENST00000458046 IL17REQ8NFR9 667 aa14.18□□□□□ -0.14
SYNE2-207ENST00000458046 QTRT2Q9H974 415 aaKnown RBP14.18□□□□□ -0.14
SYNE2-207ENST00000458046 EPB41L2O43491 1005 aaKnown RBP14.17□□□□□ -0.14
SYNE2-207ENST00000458046 GNAI3P08754 354 aa14.17□□□□□ -0.14
SYNE2-207ENST00000458046 POLD1P28340 1107 aa14.17□□□□□ -0.14
SYNE2-207ENST00000458046 DNAJC14Q6Y2X3 702 aaPredicted RBP14.17□□□□□ -0.14
SYNE2-207ENST00000458046 ESYT1Q9BSJ8 1104 aa14.17□□□□□ -0.14
SYNE2-207ENST00000458046 PALD1Q9ULE6 856 aa14.17□□□□□ -0.14
SYNE2-207ENST00000458046 ZSCAN23Q3MJ62 389 aa14.17□□□□□ -0.14
SYNE2-207ENST00000458046 USHBP1Q8N6Y0 703 aa14.17□□□□□ -0.14
SYNE2-207ENST00000458046 IL1RAPL2Q9NP60 686 aa14.17□□□□□ -0.14
SYNE2-207ENST00000458046 ANO2Q9NQ90 1003 aa14.17□□□□□ -0.14
SYNE2-207ENST00000458046 KDRP35968 1356 aa14.17□□□□□ -0.14
SYNE2-207ENST00000458046 UNC5CLQ8IV45 518 aa14.16□□□□□ -0.14
SYNE2-207ENST00000458046 TMX3Q96JJ7 454 aa14.16□□□□□ -0.14
SYNE2-207ENST00000458046 METTL14Q9HCE5 456 aaKnown RBP14.16□□□□□ -0.14
SYNE2-207ENST00000458046 ARMCX6Q7L4S7 300 aa14.16□□□□□ -0.14
SYNE2-207ENST00000458046 RGPD1P0DJD0 1748 aa14.16□□□□□ -0.14
SYNE2-207ENST00000458046 SALL3Q9BXA9 1300 aa14.15□□□□□ -0.14
SYNE2-207ENST00000458046 GPT2Q8TD30 523 aa14.15□□□□□ -0.14
SYNE2-207ENST00000458046 PHAXQ9H814 394 aaKnown RBP14.15□□□□□ -0.14
SYNE2-207ENST00000458046 UBR1Q8IWV7 1749 aa14.15□□□□□ -0.14
SYNE2-207ENST00000458046 CHMLP26374 656 aa14.15□□□□□ -0.14
SYNE2-207ENST00000458046 ARID4AP29374 1257 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-207ENST00000458046 HOXC9P31274 260 aa14.15□□□□□ -0.14
SYNE2-207ENST00000458046 MMP14P50281 582 aa14.15□□□□□ -0.14
SYNE2-207ENST00000458046 USP44Q9H0E7 712 aa14.15□□□□□ -0.14
SYNE2-207ENST00000458046 ANP32BQ92688 251 aaKnown RBP14.14□□□□□ -0.15
SYNE2-207ENST00000458046 ATRNO75882 1429 aa14.14□□□□□ -0.15
SYNE2-207ENST00000458046 HTATSF1O43719 755 aaKnown RBP14.14□□□□□ -0.15
SYNE2-207ENST00000458046 CCDC173Q0VFZ6 552 aa14.14□□□□□ -0.15
SYNE2-207ENST00000458046 TAF7Q15545 349 aaPredicted RBP14.14□□□□□ -0.15
SYNE2-207ENST00000458046 C11orf96Q7Z7L8 435 aa14.14□□□□□ -0.15
SYNE2-207ENST00000458046 NUTM1Q86Y26 1132 aa14.14□□□□□ -0.15
SYNE2-207ENST00000458046 ABTB2Q8N961 1025 aa14.14□□□□□ -0.15
SYNE2-207ENST00000458046 UBTFL1P0CB47 393 aaPredicted RBP14.13□□□□□ -0.15
SYNE2-207ENST00000458046 EIF2S2P20042 333 aaKnown RBP14.13□□□□□ -0.15
SYNE2-207ENST00000458046 ZNF445P59923 1031 aa14.13□□□□□ -0.15
SYNE2-207ENST00000458046 UPF3BQ9BZI7 483 aaKnown RBP14.13□□□□□ -0.15
SYNE2-207ENST00000458046 MAGEC2Q9UBF1 373 aaPredicted RBP14.13□□□□□ -0.15
SYNE2-207ENST00000458046 NSFL1CQ9UNZ2 370 aaKnown RBP14.13□□□□□ -0.15
SYNE2-207ENST00000458046 IBTKQ9P2D0 1353 aaPredicted RBP14.13□□□□□ -0.15
SYNE2-207ENST00000458046 PRIM1P49642 420 aaKnown RBP14.13□□□□□ -0.15
SYNE2-207ENST00000458046 HDGFL1Q5TGJ6 251 aa14.13□□□□□ -0.15
SYNE2-207ENST00000458046 RBSNQ9H1K0 784 aa14.13□□□□□ -0.15
SYNE2-207ENST00000458046 CHPF2Q9P2E5 772 aa14.13□□□□□ -0.15
SYNE2-207ENST00000458046 TOPAZ1Q8N9V7 1692 aa14.12□□□□□ -0.15
SYNE2-207ENST00000458046 BDNFP23560 247 aa14.12□□□□□ -0.15
SYNE2-207ENST00000458046 TBX22Q9Y458 520 aa14.12□□□□□ -0.15
SYNE2-207ENST00000458046 ERBB3P21860 1342 aa14.12□□□□□ -0.15
SYNE2-207ENST00000458046 PPP1R9BQ96SB3 815 aa14.12□□□□□ -0.15
SYNE2-207ENST00000458046 IL25Q9H293 177 aa14.12□□□□□ -0.15
SYNE2-207ENST00000458046 ZNF330Q9Y3S2 320 aaPredicted RBP14.12□□□□□ -0.15
SYNE2-207ENST00000458046 NALCNQ8IZF0 1738 aa14.12□□□□□ -0.15
SYNE2-207ENST00000458046 TTC36A6NLP5 189 aa14.11□□□□□ -0.15
SYNE2-207ENST00000458046 EXOC5O00471 708 aa14.11□□□□□ -0.15
SYNE2-207ENST00000458046 SURF6O75683 361 aaKnown RBP14.11□□□□□ -0.15
SYNE2-207ENST00000458046 CCDC181Q5TID7 509 aa14.11□□□□□ -0.15
SYNE2-207ENST00000458046 GET4Q7L5D6 327 aaPredicted RBP14.11□□□□□ -0.15
SYNE2-207ENST00000458046 PLCD3Q8N3E9 789 aa14.11□□□□□ -0.15
SYNE2-207ENST00000458046 GIGYF1O75420 1035 aaPredicted RBP14.11□□□□□ -0.15
SYNE2-207ENST00000458046 SF3B2Q13435 895 aaKnown RBP14.11□□□□□ -0.15
SYNE2-207ENST00000458046 NBPF11Q86T75 865 aa14.11□□□□□ -0.15
SYNE2-207ENST00000458046 PPP1R42Q7Z4L9 355 aa14.1□□□□□ -0.15
SYNE2-207ENST00000458046 GPIHBP1Q8IV16 184 aa14.1□□□□□ -0.15
SYNE2-207ENST00000458046 GNL3LQ9NVN8 582 aaKnown RBP14.1□□□□□ -0.15
SYNE2-207ENST00000458046 STAP2Q9UGK3 403 aa14.1□□□□□ -0.15
SYNE2-207ENST00000458046 PARP9Q8IXQ6 854 aa14.1□□□□□ -0.15
SYNE2-207ENST00000458046 SPACA7Q96KW9 195 aa14.1□□□□□ -0.15
SYNE2-207ENST00000458046 MAP3K5Q99683 1374 aa14.1□□□□□ -0.15
SYNE2-207ENST00000458046 TMEM63CQ9P1W3 806 aa14.1□□□□□ -0.15
SYNE2-207ENST00000458046 KCNA6P17658 529 aa14.09□□□□□ -0.15
SYNE2-207ENST00000458046 SYCE3A1L190 88 aa14.09□□□□□ -0.15
SYNE2-207ENST00000458046 MCM2P49736 904 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms