RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 CCDC102AQ96A19 550 aa22.39■■□□□ 1.17
SF3B4-202ENST00000457312 STARD3NLO95772 234 aa22.38■■□□□ 1.17
SF3B4-202ENST00000457312 NEUROD1Q13562 356 aa22.38■■□□□ 1.17
SF3B4-202ENST00000457312 NBPF5PQ86XG9 351 aaPredicted RBP22.38■■□□□ 1.17
SF3B4-202ENST00000457312 ZC3H15Q8WU90 426 aaKnown RBP22.38■■□□□ 1.17
SF3B4-202ENST00000457312 CSRNP1Q96S65 589 aa22.38■■□□□ 1.17
SF3B4-202ENST00000457312 LGR6Q9HBX8 967 aa22.38■■□□□ 1.17
SF3B4-202ENST00000457312 HIRAP54198 1017 aaPredicted RBP22.37■■□□□ 1.17
SF3B4-202ENST00000457312 FBXO46Q6PJ61 603 aaPredicted RBP22.37■■□□□ 1.17
SF3B4-202ENST00000457312 DLK2Q6UY11 383 aa22.37■■□□□ 1.17
SF3B4-202ENST00000457312 CENPFP49454 3210 aa22.36■■□□□ 1.17
SF3B4-202ENST00000457312 SLC24A1O60721 1099 aa22.36■■□□□ 1.17
SF3B4-202ENST00000457312 SLC10A3P09131 477 aa22.36■■□□□ 1.17
SF3B4-202ENST00000457312 HDAC9Q9UKV0 1011 aa22.36■■□□□ 1.17
SF3B4-202ENST00000457312 IL6STP40189 918 aaPredicted RBP22.35■■□□□ 1.17
SF3B4-202ENST00000457312 ZNF157P51786 506 aaPredicted RBP22.35■■□□□ 1.17
SF3B4-202ENST00000457312 NIM1KQ8IY84 436 aa22.35■■□□□ 1.17
SF3B4-202ENST00000457312 TRPM4Q8TD43 1214 aa22.35■■□□□ 1.17
SF3B4-202ENST00000457312 ZNF296Q8WUU4 475 aaPredicted RBP22.35■■□□□ 1.17
SF3B4-202ENST00000457312 NPC1L1Q9UHC9 1359 aa22.35■■□□□ 1.17
SF3B4-202ENST00000457312 ALDH1B1P30837 517 aa22.34■■□□□ 1.17
SF3B4-202ENST00000457312 GMPSP49915 693 aaPredicted RBP22.34■■□□□ 1.17
SF3B4-202ENST00000457312 GBA2Q9HCG7 927 aaPredicted RBP22.34■■□□□ 1.17
SF3B4-202ENST00000457312 POTEFA5A3E0 1075 aa22.33■■□□□ 1.17
SF3B4-202ENST00000457312 RNMTO43148 476 aaKnown RBP22.33■■□□□ 1.17
SF3B4-202ENST00000457312 SLC51AQ86UW1 340 aa22.33■■□□□ 1.17
SF3B4-202ENST00000457312 CDHR2Q9BYE9 1310 aa22.32■■□□□ 1.16
SF3B4-202ENST00000457312 CC2D2BQ6DHV5 1058 aa22.32■■□□□ 1.16
SF3B4-202ENST00000457312 USP48Q86UV5 1035 aa22.32■■□□□ 1.16
SF3B4-202ENST00000457312 RANBP2P49792 3224 aaKnown RBP22.32■■□□□ 1.16
SF3B4-202ENST00000457312 CXCL9Q07325 125 aa22.29■■□□□ 1.16
SF3B4-202ENST00000457312 DZIP3Q86Y13 1208 aaKnown RBP22.29■■□□□ 1.16
SF3B4-202ENST00000457312 HEG1Q9ULI3 1381 aa22.28■■□□□ 1.16
SF3B4-202ENST00000457312 TNNT2P45379 298 aaPredicted RBP22.28■■□□□ 1.16
SF3B4-202ENST00000457312 C2orf69Q8N8R5 385 aa22.28■■□□□ 1.16
SF3B4-202ENST00000457312 PPIP5K2O43314 1243 aa22.27■■□□□ 1.16
SF3B4-202ENST00000457312 SULT6B1Q6IMI4 303 aa22.27■■□□□ 1.16
SF3B4-202ENST00000457312 SIPA1L3O60292 1781 aaPredicted RBP22.27■■□□□ 1.16
SF3B4-202ENST00000457312 SHTN1A0MZ66 631 aa22.26■■□□□ 1.15
SF3B4-202ENST00000457312 AOC3Q16853 763 aa22.26■■□□□ 1.15
SF3B4-202ENST00000457312 CRY2Q49AN0 593 aa22.26■■□□□ 1.15
SF3B4-202ENST00000457312 REM2Q8IYK8 340 aaPredicted RBP22.26■■□□□ 1.15
SF3B4-202ENST00000457312 ZNF496Q96IT1 587 aaPredicted RBP22.26■■□□□ 1.15
SF3B4-202ENST00000457312 TBC1D8O95759 1140 aa22.25■■□□□ 1.15
SF3B4-202ENST00000457312 A1BGP04217 495 aa22.25■■□□□ 1.15
SF3B4-202ENST00000457312 CLEC4GQ6UXB4 293 aa22.25■■□□□ 1.15
SF3B4-202ENST00000457312 TPTE2Q6XPS3 522 aa22.25■■□□□ 1.15
SF3B4-202ENST00000457312 RASAL3Q86YV0 1011 aa22.25■■□□□ 1.15
SF3B4-202ENST00000457312 ABCC12Q96J65 1359 aa22.25■■□□□ 1.15
SF3B4-202ENST00000457312 RIC1Q4ADV7 1423 aa22.24■■□□□ 1.15
SF3B4-202ENST00000457312 GRIPAP1Q4V328 841 aa22.24■■□□□ 1.15
SF3B4-202ENST00000457312 TTC5Q8N0Z6 440 aa22.24■■□□□ 1.15
SF3B4-202ENST00000457312 KRT26Q7Z3Y9 468 aa22.23■■□□□ 1.15
SF3B4-202ENST00000457312 NPM2Q86SE8 214 aaKnown RBP22.23■■□□□ 1.15
SF3B4-202ENST00000457312 OTUD5Q96G74 571 aa22.23■■□□□ 1.15
SF3B4-202ENST00000457312 ZNRF3Q9ULT6 936 aa22.23■■□□□ 1.15
SF3B4-202ENST00000457312 PITPNM2Q9BZ72 1349 aa22.23■■□□□ 1.15
SF3B4-202ENST00000457312 ADM5C9JUS6 153 aa22.22■■□□□ 1.15
SF3B4-202ENST00000457312 GPR25O00155 361 aa22.22■■□□□ 1.15
SF3B4-202ENST00000457312 NOM1Q5C9Z4 860 aaKnown RBP22.22■■□□□ 1.15
SF3B4-202ENST00000457312 BCL2L13Q9BXK5 485 aa22.22■■□□□ 1.15
SF3B4-202ENST00000457312 TEX13AQ9BXU3 409 aaPredicted RBP22.22■■□□□ 1.15
SF3B4-202ENST00000457312 FAM177BA6PVY3 158 aa22.21■■□□□ 1.15
SF3B4-202ENST00000457312 MNX1P50219 401 aaPredicted RBP22.21■■□□□ 1.15
SF3B4-202ENST00000457312 NIP7Q9Y221 180 aaKnown RBP eCLIP22.2■■□□□ 1.14
SF3B4-202ENST00000457312 ZNF652Q9Y2D9 606 aa22.2■■□□□ 1.14
SF3B4-202ENST00000457312 INTS3Q68E01 1043 aaKnown RBP22.19■■□□□ 1.14
SF3B4-202ENST00000457312 CNOT7Q9UIV1 285 aaKnown RBP22.19■■□□□ 1.14
SF3B4-202ENST00000457312 MICALL2Q8IY33 904 aa22.18■■□□□ 1.14
SF3B4-202ENST00000457312 KIF7Q2M1P5 1343 aa22.17■■□□□ 1.14
SF3B4-202ENST00000457312 PPEF1O14829 653 aaPredicted RBP22.17■■□□□ 1.14
SF3B4-202ENST00000457312 RAD17O75943 681 aa22.17■■□□□ 1.14
SF3B4-202ENST00000457312 EN2P19622 333 aaPredicted RBP22.17■■□□□ 1.14
SF3B4-202ENST00000457312 HOXA10P31260 410 aaPredicted RBP22.17■■□□□ 1.14
SF3B4-202ENST00000457312 PIP4K2AP48426 406 aaPredicted RBP22.17■■□□□ 1.14
SF3B4-202ENST00000457312 VPS33BQ9H267 617 aa22.17■■□□□ 1.14
SF3B4-202ENST00000457312 CDCA8Q53HL2 280 aa22.16■■□□□ 1.14
SF3B4-202ENST00000457312 ZNF790Q6PG37 636 aa22.16■■□□□ 1.14
SF3B4-202ENST00000457312 H0YGN5 161 aa22.15■■□□□ 1.14
SF3B4-202ENST00000457312 SAMD7Q7Z3H4 446 aa22.15■■□□□ 1.14
SF3B4-202ENST00000457312 H7C1D1 291 aa22.14■■□□□ 1.13
SF3B4-202ENST00000457312 TCERG1O14776 1098 aaKnown RBP22.14■■□□□ 1.13
SF3B4-202ENST00000457312 FKTNO75072 461 aa22.14■■□□□ 1.13
SF3B4-202ENST00000457312 EGFRP00533 1210 aa22.14■■□□□ 1.13
SF3B4-202ENST00000457312 TNIP1Q15025 636 aa22.14■■□□□ 1.13
SF3B4-202ENST00000457312 CHRDL2Q6WN34 429 aa22.14■■□□□ 1.13
SF3B4-202ENST00000457312 RPGRQ92834 1020 aaKnown RBP22.14■■□□□ 1.13
SF3B4-202ENST00000457312 LAMA3Q16787 3333 aa22.12■■□□□ 1.13
SF3B4-202ENST00000457312 RGL2O15211 777 aa22.12■■□□□ 1.13
SF3B4-202ENST00000457312 GTF2E1P29083 439 aaPredicted RBP22.12■■□□□ 1.13
SF3B4-202ENST00000457312 UNC80Q8N2C7 3258 aa22.11■■□□□ 1.13
SF3B4-202ENST00000457312 TBC1D10BQ4KMP7 808 aaPredicted RBP22.11■■□□□ 1.13
SF3B4-202ENST00000457312 NUTM1Q86Y26 1132 aa22.11■■□□□ 1.13
SF3B4-202ENST00000457312 DCPSQ96C86 337 aaKnown RBP22.11■■□□□ 1.13
SF3B4-202ENST00000457312 RTFDC1Q9BY42 306 aaPredicted RBP22.11■■□□□ 1.13
SF3B4-202ENST00000457312 RBM27Q9P2N5 1060 aaKnown RBP22.11■■□□□ 1.13
SF3B4-202ENST00000457312 NUP98P52948 1817 aa22.1■■□□□ 1.13
SF3B4-202ENST00000457312 YDJCA8MPS7 323 aa22.1■■□□□ 1.13
SF3B4-202ENST00000457312 IL13P35225 146 aa22.1■■□□□ 1.13
SF3B4-202ENST00000457312 CDCA5Q96FF9 252 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms