RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PTPN12Q05209 780 aaKnown RBP18.16■□□□□ 0.5
LDLR-202ENST00000455727 ARXQ96QS3 562 aa18.16■□□□□ 0.5
LDLR-202ENST00000455727 SHANK3Q9BYB0 1731 aa18.16■□□□□ 0.5
LDLR-202ENST00000455727 ZNF445P59923 1031 aa18.16■□□□□ 0.5
LDLR-202ENST00000455727 PTH1RQ03431 593 aa18.16■□□□□ 0.5
LDLR-202ENST00000455727 NECTIN1Q15223 517 aa18.16■□□□□ 0.5
LDLR-202ENST00000455727 UBE3BQ7Z3V4 1068 aa18.16■□□□□ 0.5
LDLR-202ENST00000455727 LIMCH1Q9UPQ0 1083 aa18.16■□□□□ 0.5
LDLR-202ENST00000455727 NUP188Q5SRE5 1749 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 CCDC171Q6TFL3 1326 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 A0A087WZG4 1122 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 NBPF26B4DH59 902 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 IL2RBP14784 551 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 PIP4K2AP48426 406 aaPredicted RBP18.15■□□□□ 0.5
LDLR-202ENST00000455727 NBPF14Q5TI25 921 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 NBPF10Q6P3W6 841 aaKnown RBP18.15■□□□□ 0.5
LDLR-202ENST00000455727 NBPF15Q8N660 670 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 KLHDC4Q8TBB5 520 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 TLR7Q9NYK1 1049 aaKnown RBP18.15■□□□□ 0.5
LDLR-202ENST00000455727 KCPQ6ZWJ8 1503 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 PRPF40AO75400 957 aaKnown RBP18.15■□□□□ 0.5
LDLR-202ENST00000455727 AK2P54819 239 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 NOL8Q76FK4 1167 aaKnown RBP18.15■□□□□ 0.5
LDLR-202ENST00000455727 MAP4K1Q92918 833 aa18.15■□□□□ 0.5
LDLR-202ENST00000455727 VPS53Q5VIR6 699 aa18.14■□□□□ 0.49
LDLR-202ENST00000455727 ZSWIM6Q9HCJ5 1215 aa18.14■□□□□ 0.49
LDLR-202ENST00000455727 H7C1W4 665 aa18.14■□□□□ 0.49
LDLR-202ENST00000455727 ATP5JP18859 108 aa18.14■□□□□ 0.49
LDLR-202ENST00000455727 WDR33Q9C0J8 1336 aaKnown RBP18.13■□□□□ 0.49
LDLR-202ENST00000455727 ATP5J2-PTCD1G3V325 749 aa18.13■□□□□ 0.49
LDLR-202ENST00000455727 PTCD1O75127 700 aaKnown RBP18.13■□□□□ 0.49
LDLR-202ENST00000455727 NMIQ13287 307 aaPredicted RBP18.13■□□□□ 0.49
LDLR-202ENST00000455727 BOLA2Q9H3K6 86 aa18.13■□□□□ 0.49
LDLR-202ENST00000455727 TNS2Q63HR2 1409 aa18.13■□□□□ 0.49
LDLR-202ENST00000455727 ZKSCAN1P17029 563 aaPredicted RBP18.12■□□□□ 0.49
LDLR-202ENST00000455727 CASTP20810 708 aaKnown RBP18.12■□□□□ 0.49
LDLR-202ENST00000455727 TNNI3KQ59H18 835 aa18.12■□□□□ 0.49
LDLR-202ENST00000455727 RUFY3Q7L099 469 aa18.12■□□□□ 0.49
LDLR-202ENST00000455727 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.12■□□□□ 0.49
LDLR-202ENST00000455727 FPGT-TNNI3KV9GXZ4 949 aa18.12■□□□□ 0.49
LDLR-202ENST00000455727 PRPF40BQ6NWY9 871 aaKnown RBP18.12■□□□□ 0.49
LDLR-202ENST00000455727 FAM227BQ96M60 508 aa18.12■□□□□ 0.49
LDLR-202ENST00000455727 GPT2Q8TD30 523 aa18.11■□□□□ 0.49
LDLR-202ENST00000455727 ZSCAN31Q96LW9 406 aaPredicted RBP18.11■□□□□ 0.49
LDLR-202ENST00000455727 FSD1Q9BTV5 496 aa18.11■□□□□ 0.49
LDLR-202ENST00000455727 CYP46A1Q9Y6A2 500 aa18.11■□□□□ 0.49
LDLR-202ENST00000455727 RFX7Q2KHR2 1363 aa18.11■□□□□ 0.49
LDLR-202ENST00000455727 MED23Q9ULK4 1368 aa18.11■□□□□ 0.49
LDLR-202ENST00000455727 MBD3O95983 291 aa18.11■□□□□ 0.49
LDLR-202ENST00000455727 CAVIN1Q6NZI2 390 aaKnown RBP18.11■□□□□ 0.49
LDLR-202ENST00000455727 DBNLQ9UJU6 430 aaKnown RBP18.11■□□□□ 0.49
LDLR-202ENST00000455727 RBM8AQ9Y5S9 174 aaKnown RBP18.11■□□□□ 0.49
LDLR-202ENST00000455727 NHSL1Q5SYE7 1610 aa18.11■□□□□ 0.49
LDLR-202ENST00000455727 JCADQ9P266 1359 aa18.1■□□□□ 0.49
LDLR-202ENST00000455727 FOXO4P98177 505 aa18.1■□□□□ 0.49
LDLR-202ENST00000455727 TFCP2Q12800 502 aa18.1■□□□□ 0.49
LDLR-202ENST00000455727 ZSCAN23Q3MJ62 389 aa18.1■□□□□ 0.49
LDLR-202ENST00000455727 CREB3L3Q68CJ9 461 aa18.1■□□□□ 0.49
LDLR-202ENST00000455727 JARID2Q92833 1246 aaPredicted RBP18.1■□□□□ 0.49
LDLR-202ENST00000455727 JAKMIP1Q96N16 626 aaKnown RBP18.1■□□□□ 0.49
LDLR-202ENST00000455727 CWC25Q9NXE8 425 aaPredicted RBP18.1■□□□□ 0.49
LDLR-202ENST00000455727 TJP1Q07157 1748 aa18.1■□□□□ 0.49
LDLR-202ENST00000455727 SH2B1Q9NRF2 756 aaPredicted RBP18.1■□□□□ 0.49
LDLR-202ENST00000455727 PDRG1Q9NUG6 133 aa18.1■□□□□ 0.49
LDLR-202ENST00000455727 NCLP19338 710 aaKnown RBP18.09■□□□□ 0.49
LDLR-202ENST00000455727 ADCK5Q3MIX3 580 aa18.09■□□□□ 0.49
LDLR-202ENST00000455727 LMBR1LQ6UX01 489 aa18.09■□□□□ 0.49
LDLR-202ENST00000455727 CCDC191Q8NCU4 936 aa18.09■□□□□ 0.49
LDLR-202ENST00000455727 ZNF335Q9H4Z2 1342 aaPredicted RBP18.09■□□□□ 0.49
LDLR-202ENST00000455727 RPAP1Q9BWH6 1393 aaPredicted RBP18.09■□□□□ 0.49
LDLR-202ENST00000455727 A0A0D9SFI3 127 aa18.09■□□□□ 0.49
LDLR-202ENST00000455727 PSMA5P28066 241 aa18.09■□□□□ 0.49
LDLR-202ENST00000455727 RNF20Q5VTR2 975 aa18.09■□□□□ 0.49
LDLR-202ENST00000455727 TTLL7Q6ZT98 887 aa18.09■□□□□ 0.49
LDLR-202ENST00000455727 TICAM2Q86XR7 235 aa18.08■□□□□ 0.48
LDLR-202ENST00000455727 GPR108Q9NPR9 543 aa18.08■□□□□ 0.48
LDLR-202ENST00000455727 SLC27A2O14975 620 aa18.07■□□□□ 0.48
LDLR-202ENST00000455727 A1BGP04217 495 aa18.07■□□□□ 0.48
LDLR-202ENST00000455727 EVA1CP58658 441 aa18.07■□□□□ 0.48
LDLR-202ENST00000455727 TSGA10IPQ3SY00 556 aa18.07■□□□□ 0.48
LDLR-202ENST00000455727 FOXD4L5Q5VV16 416 aaPredicted RBP18.07■□□□□ 0.48
LDLR-202ENST00000455727 FOXD4L4Q8WXT5 416 aaPredicted RBP18.07■□□□□ 0.48
LDLR-202ENST00000455727 ALDH8A1Q9H2A2 487 aaPredicted RBP18.07■□□□□ 0.48
LDLR-202ENST00000455727 KCNJ4P48050 445 aa18.07■□□□□ 0.48
LDLR-202ENST00000455727 DDX54Q8TDD1 881 aaKnown RBP18.07■□□□□ 0.48
LDLR-202ENST00000455727 HMG20BQ9P0W2 317 aa18.07■□□□□ 0.48
LDLR-202ENST00000455727 TOGARAM1Q9Y4F4 1720 aa18.07■□□□□ 0.48
LDLR-202ENST00000455727 HAUS7Q99871 368 aa18.06■□□□□ 0.48
LDLR-202ENST00000455727 ATG3Q9NT62 314 aa18.06■□□□□ 0.48
LDLR-202ENST00000455727 TCHHQ07283 1943 aa18.06■□□□□ 0.48
LDLR-202ENST00000455727 CPA1P15085 419 aa18.06■□□□□ 0.48
LDLR-202ENST00000455727 USPL1Q5W0Q7 1092 aa18.06■□□□□ 0.48
LDLR-202ENST00000455727 CHAMP1Q96JM3 812 aa18.06■□□□□ 0.48
LDLR-202ENST00000455727 SMC3Q9UQE7 1217 aa18.06■□□□□ 0.48
LDLR-202ENST00000455727 STRN4Q9NRL3 753 aa18.05■□□□□ 0.48
LDLR-202ENST00000455727 ZSCAN22P10073 491 aaPredicted RBP18.05■□□□□ 0.48
LDLR-202ENST00000455727 PDIA4P13667 645 aaKnown RBP18.05■□□□□ 0.48
LDLR-202ENST00000455727 NASPP49321 788 aaPredicted RBP18.05■□□□□ 0.48
LDLR-202ENST00000455727 ATG9AQ7Z3C6 839 aa18.05■□□□□ 0.48
LDLR-202ENST00000455727 TMEM87AQ8NBN3 555 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms