RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 FER1L6Q2WGJ9 1857 aa25.62■■□□□ 1.69
COL9A3-202ENST00000452372 TCERG1O14776 1098 aaKnown RBP25.62■■□□□ 1.69
COL9A3-202ENST00000452372 C21orf2O43822 256 aa25.62■■□□□ 1.69
COL9A3-202ENST00000452372 RBM46Q8TBY0 533 aaKnown RBP25.62■■□□□ 1.69
COL9A3-202ENST00000452372 CACNA1FO60840 1977 aa25.62■■□□□ 1.69
COL9A3-202ENST00000452372 NPHP1O15259 732 aa25.61■■□□□ 1.69
COL9A3-202ENST00000452372 ST5P78524 1137 aa25.61■■□□□ 1.69
COL9A3-202ENST00000452372 TCIRG1Q13488 830 aa25.61■■□□□ 1.69
COL9A3-202ENST00000452372 STYK1Q6J9G0 422 aa25.61■■□□□ 1.69
COL9A3-202ENST00000452372 TRMT2AQ8IZ69 625 aaKnown RBP25.61■■□□□ 1.69
COL9A3-202ENST00000452372 ZNF219Q9P2Y4 722 aaPredicted RBP25.61■■□□□ 1.69
COL9A3-202ENST00000452372 UBN2Q6ZU65 1347 aa25.61■■□□□ 1.69
COL9A3-202ENST00000452372 ZC3H4Q9UPT8 1303 aaKnown RBP25.61■■□□□ 1.69
COL9A3-202ENST00000452372 KLRG2A4D1S0 409 aaPredicted RBP25.6■■□□□ 1.69
COL9A3-202ENST00000452372 FAM177BA6PVY3 158 aa25.6■■□□□ 1.69
COL9A3-202ENST00000452372 SLC4A2P04920 1241 aa25.6■■□□□ 1.69
COL9A3-202ENST00000452372 PARP10Q53GL7 1025 aa25.6■■□□□ 1.69
COL9A3-202ENST00000452372 NYXQ9GZU5 481 aa25.6■■□□□ 1.69
COL9A3-202ENST00000452372 HNRNPUQ00839 825 aaKnown RBP eCLIP25.59■■□□□ 1.69
COL9A3-202ENST00000452372 C7orf43Q8WVR3 580 aa25.59■■□□□ 1.69
COL9A3-202ENST00000452372 ANKRD36CQ5JPF3 1778 aa25.59■■□□□ 1.69
COL9A3-202ENST00000452372 GLTPD2A6NH11 291 aa25.58■■□□□ 1.69
COL9A3-202ENST00000452372 SUSD4Q5VX71 490 aa25.58■■□□□ 1.69
COL9A3-202ENST00000452372 RIC3Q7Z5B4 369 aa25.58■■□□□ 1.69
COL9A3-202ENST00000452372 DNAJC5GQ8N7S2 189 aa25.58■■□□□ 1.69
COL9A3-202ENST00000452372 CNKSR1Q969H4 720 aa25.58■■□□□ 1.69
COL9A3-202ENST00000452372 MASTLQ96GX5 879 aa25.58■■□□□ 1.69
COL9A3-202ENST00000452372 IBTKQ9P2D0 1353 aaPredicted RBP25.57■■□□□ 1.68
COL9A3-202ENST00000452372 DDX58O95786 925 aaKnown RBP25.57■■□□□ 1.68
COL9A3-202ENST00000452372 GTF2E1P29083 439 aaPredicted RBP25.57■■□□□ 1.68
COL9A3-202ENST00000452372 PPP1R42Q7Z4L9 355 aa25.57■■□□□ 1.68
COL9A3-202ENST00000452372 DICER1Q9UPY3 1922 aaKnown RBP25.57■■□□□ 1.68
COL9A3-202ENST00000452372 CACNA1SQ13698 1873 aa25.56■■□□□ 1.68
COL9A3-202ENST00000452372 APLP1P51693 650 aa25.56■■□□□ 1.68
COL9A3-202ENST00000452372 PRPF40BQ6NWY9 871 aaKnown RBP25.56■■□□□ 1.68
COL9A3-202ENST00000452372 G2E3Q7L622 706 aa25.56■■□□□ 1.68
COL9A3-202ENST00000452372 NLRP10Q86W26 655 aa25.56■■□□□ 1.68
COL9A3-202ENST00000452372 TNRC6CQ9HCJ0 1690 aaKnown RBP25.55■■□□□ 1.68
COL9A3-202ENST00000452372 ARFGEF2Q9Y6D5 1785 aa25.55■■□□□ 1.68
COL9A3-202ENST00000452372 POTECB2RU33 542 aa25.55■■□□□ 1.68
COL9A3-202ENST00000452372 ISCA1Q9BUE6 129 aa25.55■■□□□ 1.68
COL9A3-202ENST00000452372 NTSR2O95665 410 aa25.54■■□□□ 1.68
COL9A3-202ENST00000452372 KSR2Q6VAB6 950 aa25.54■■□□□ 1.68
COL9A3-202ENST00000452372 NUTM1Q86Y26 1132 aa25.54■■□□□ 1.68
COL9A3-202ENST00000452372 LTBP3Q9NS15 1303 aa25.54■■□□□ 1.68
COL9A3-202ENST00000452372 FSTL1Q12841 308 aa25.53■■□□□ 1.68
COL9A3-202ENST00000452372 TRIM28Q13263 835 aaKnown RBP25.53■■□□□ 1.68
COL9A3-202ENST00000452372 ERFEQ4G0M1 354 aa25.53■■□□□ 1.68
COL9A3-202ENST00000452372 C16orf71Q8IYS4 520 aaPredicted RBP25.53■■□□□ 1.68
COL9A3-202ENST00000452372 UTP14AQ9BVJ6 771 aaKnown RBP25.53■■□□□ 1.68
COL9A3-202ENST00000452372 TIAM2Q8IVF5 1701 aa25.53■■□□□ 1.68
COL9A3-202ENST00000452372 FLIIQ13045 1269 aa25.52■■□□□ 1.68
COL9A3-202ENST00000452372 PI4KAP2A4QPH2 592 aa25.51■■□□□ 1.67
COL9A3-202ENST00000452372 ATP5J2-PTCD1G3V325 749 aa25.51■■□□□ 1.67
COL9A3-202ENST00000452372 NPR1P16066 1061 aa25.51■■□□□ 1.67
COL9A3-202ENST00000452372 PI4KAP1Q8N8J0 262 aa25.51■■□□□ 1.67
COL9A3-202ENST00000452372 METTL22Q9BUU2 404 aaPredicted RBP25.51■■□□□ 1.67
COL9A3-202ENST00000452372 MAP3K2Q9Y2U5 619 aa25.51■■□□□ 1.67
COL9A3-202ENST00000452372 RNF123Q5XPI4 1314 aa25.51■■□□□ 1.67
COL9A3-202ENST00000452372 VEGFAP15692 232 aaPredicted RBP25.5■■□□□ 1.67
COL9A3-202ENST00000452372 SLC10A5Q5PT55 438 aa25.5■■□□□ 1.67
COL9A3-202ENST00000452372 ZNF428Q96B54 188 aa25.5■■□□□ 1.67
COL9A3-202ENST00000452372 TAOK3Q9H2K8 898 aa25.5■■□□□ 1.67
COL9A3-202ENST00000452372 ABCC12Q96J65 1359 aa25.49■■□□□ 1.67
COL9A3-202ENST00000452372 MYD88Q99836 296 aa25.49■■□□□ 1.67
COL9A3-202ENST00000452372 TRMT112Q9UI30 125 aaKnown RBP25.49■■□□□ 1.67
COL9A3-202ENST00000452372 RIC1Q4ADV7 1423 aa25.48■■□□□ 1.67
COL9A3-202ENST00000452372 CT47B1P0C2W7 299 aaPredicted RBP25.48■■□□□ 1.67
COL9A3-202ENST00000452372 HTRA3P83110 453 aa25.48■■□□□ 1.67
COL9A3-202ENST00000452372 OLFM4Q6UX06 510 aa25.48■■□□□ 1.67
COL9A3-202ENST00000452372 FKBP5Q13451 457 aaPredicted RBP25.47■■□□□ 1.67
COL9A3-202ENST00000452372 WDR90Q96KV7 1748 aa25.46■■□□□ 1.67
COL9A3-202ENST00000452372 ZBED9Q6R2W3 1325 aa25.46■■□□□ 1.67
COL9A3-202ENST00000452372 SOGA3Q5TF21 947 aa25.46■■□□□ 1.67
COL9A3-202ENST00000452372 CCDC191Q8NCU4 936 aa25.46■■□□□ 1.67
COL9A3-202ENST00000452372 SH3TC1Q8TE82 1336 aa25.45■■□□□ 1.66
COL9A3-202ENST00000452372 CRY2Q49AN0 593 aa25.45■■□□□ 1.66
COL9A3-202ENST00000452372 DPY19L2Q6NUT2 758 aa25.45■■□□□ 1.66
COL9A3-202ENST00000452372 NEXNQ0ZGT2 675 aa25.44■■□□□ 1.66
COL9A3-202ENST00000452372 SYNE4Q8N205 404 aa25.44■■□□□ 1.66
COL9A3-202ENST00000452372 MRPL50Q8N5N7 158 aaKnown RBP25.44■■□□□ 1.66
COL9A3-202ENST00000452372 SMC1BQ8NDV3 1235 aa25.44■■□□□ 1.66
COL9A3-202ENST00000452372 SSH1Q8WYL5 1049 aa25.44■■□□□ 1.66
COL9A3-202ENST00000452372 ALDH1L2Q3SY69 923 aa25.43■■□□□ 1.66
COL9A3-202ENST00000452372 CCDC93Q567U6 631 aa25.43■■□□□ 1.66
COL9A3-202ENST00000452372 DNAAF4Q8WXU2 420 aa25.43■■□□□ 1.66
COL9A3-202ENST00000452372 NLRP3Q96P20 1036 aa25.43■■□□□ 1.66
COL9A3-202ENST00000452372 CWC25Q9NXE8 425 aaPredicted RBP25.43■■□□□ 1.66
COL9A3-202ENST00000452372 DDNO94850 711 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-202ENST00000452372 IGKV5-2P06315 115 aa25.42■■□□□ 1.66
COL9A3-202ENST00000452372 FAM89AQ96GI7 184 aa25.42■■□□□ 1.66
COL9A3-202ENST00000452372 HCLS1P14317 486 aaPredicted RBP25.41■■□□□ 1.66
COL9A3-202ENST00000452372 ALDH1B1P30837 517 aa25.41■■□□□ 1.66
COL9A3-202ENST00000452372 ZBTB38Q8NAP3 1195 aaPredicted RBP25.41■■□□□ 1.66
COL9A3-202ENST00000452372 SNED1Q8TER0 1413 aa25.4■■□□□ 1.66
COL9A3-202ENST00000452372 HOXA10P31260 410 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-202ENST00000452372 FKBP4Q02790 459 aaKnown RBP eCLIP25.4■■□□□ 1.66
COL9A3-202ENST00000452372 C3orf67Q6ZVT6 689 aa25.4■■□□□ 1.66
COL9A3-202ENST00000452372 ZNF277Q9NRM2 450 aaPredicted RBP25.39■■□□□ 1.66
COL9A3-202ENST00000452372 NEURL1BA8MQ27 555 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms