RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 CLEC4GQ6UXB4 293 aa18.38■□□□□ 0.53
TNF-208ENST00000449264 BICDL1Q6ZP65 573 aa18.38■□□□□ 0.53
TNF-208ENST00000449264 PNPLA7Q6ZV29 1317 aa18.37■□□□□ 0.53
TNF-208ENST00000449264 FAM177BA6PVY3 158 aa18.37■□□□□ 0.53
TNF-208ENST00000449264 B4GALNT3Q6L9W6 998 aa18.37■□□□□ 0.53
TNF-208ENST00000449264 UBE3BQ7Z3V4 1068 aa18.37■□□□□ 0.53
TNF-208ENST00000449264 NLRP10Q86W26 655 aa18.37■□□□□ 0.53
TNF-208ENST00000449264 ZNF34Q8IZ26 560 aa18.37■□□□□ 0.53
TNF-208ENST00000449264 CCDC136Q96JN2 1154 aa18.37■□□□□ 0.53
TNF-208ENST00000449264 LRRFIP2Q9Y608 721 aaKnown RBP18.37■□□□□ 0.53
TNF-208ENST00000449264 GNAI2P04899 355 aa18.36■□□□□ 0.53
TNF-208ENST00000449264 TRIM28Q13263 835 aaKnown RBP18.36■□□□□ 0.53
TNF-208ENST00000449264 TBC1D9BQ66K14 1250 aa18.36■□□□□ 0.53
TNF-208ENST00000449264 COL23A1Q86Y22 540 aaPredicted RBP18.36■□□□□ 0.53
TNF-208ENST00000449264 FLAD1Q8NFF5 587 aa18.36■□□□□ 0.53
TNF-208ENST00000449264 PCDHB15Q9Y5E8 787 aa18.36■□□□□ 0.53
TNF-208ENST00000449264 IBTKQ9P2D0 1353 aaPredicted RBP18.36■□□□□ 0.53
TNF-208ENST00000449264 COL24A1Q17RW2 1714 aa18.36■□□□□ 0.53
TNF-208ENST00000449264 RGL2O15211 777 aa18.34■□□□□ 0.53
TNF-208ENST00000449264 UTYO14607 1347 aa18.34■□□□□ 0.53
TNF-208ENST00000449264 GYS1P13807 737 aa18.34■□□□□ 0.53
TNF-208ENST00000449264 PARP10Q53GL7 1025 aa18.34■□□□□ 0.53
TNF-208ENST00000449264 TRMT112Q9UI30 125 aaKnown RBP18.34■□□□□ 0.53
TNF-208ENST00000449264 SUSD4Q5VX71 490 aa18.33■□□□□ 0.52
TNF-208ENST00000449264 FAM89AQ96GI7 184 aa18.33■□□□□ 0.52
TNF-208ENST00000449264 SUCLG2Q96I99 432 aa18.33■□□□□ 0.52
TNF-208ENST00000449264 H7C1W4 665 aa18.32■□□□□ 0.52
TNF-208ENST00000449264 ZBTB38Q8NAP3 1195 aaPredicted RBP18.32■□□□□ 0.52
TNF-208ENST00000449264 SETDB2Q96T68 719 aa18.32■□□□□ 0.52
TNF-208ENST00000449264 PCCAP05165 728 aaPredicted RBP18.31■□□□□ 0.52
TNF-208ENST00000449264 CASP7P55210 303 aa18.31■□□□□ 0.52
TNF-208ENST00000449264 CEP85Q6P2H3 762 aa18.31■□□□□ 0.52
TNF-208ENST00000449264 UTP14AQ9BVJ6 771 aaKnown RBP18.31■□□□□ 0.52
TNF-208ENST00000449264 MYH3P11055 1940 aa18.31■□□□□ 0.52
TNF-208ENST00000449264 PPP1R42Q7Z4L9 355 aa18.31■□□□□ 0.52
TNF-208ENST00000449264 HDAC5Q9UQL6 1122 aa18.31■□□□□ 0.52
TNF-208ENST00000449264 CARMIL3Q8ND23 1372 aa18.3■□□□□ 0.52
TNF-208ENST00000449264 LAMB2P55268 1798 aa18.3■□□□□ 0.52
TNF-208ENST00000449264 NFIXQ14938 502 aa18.3■□□□□ 0.52
TNF-208ENST00000449264 SYNE4Q8N205 404 aa18.3■□□□□ 0.52
TNF-208ENST00000449264 BICC1Q9H694 974 aaKnown RBP18.3■□□□□ 0.52
TNF-208ENST00000449264 DDX60Q8IY21 1712 aaKnown RBP18.3■□□□□ 0.52
TNF-208ENST00000449264 NTSR2O95665 410 aa18.29■□□□□ 0.52
TNF-208ENST00000449264 MSL1Q68DK7 614 aa18.29■□□□□ 0.52
TNF-208ENST00000449264 NUTM1Q86Y26 1132 aa18.29■□□□□ 0.52
TNF-208ENST00000449264 KAZALD1Q96I82 304 aa18.29■□□□□ 0.52
TNF-208ENST00000449264 SH3TC1Q8TE82 1336 aa18.29■□□□□ 0.52
TNF-208ENST00000449264 EPHA10Q5JZY3 1008 aa18.28■□□□□ 0.52
TNF-208ENST00000449264 NBPF5PQ86XG9 351 aaPredicted RBP18.28■□□□□ 0.52
TNF-208ENST00000449264 ANKRD44Q8N8A2 993 aa18.28■□□□□ 0.52
TNF-208ENST00000449264 CASZ1Q86V15 1759 aa18.28■□□□□ 0.52
TNF-208ENST00000449264 IRS4O14654 1257 aaPredicted RBP18.28■□□□□ 0.52
TNF-208ENST00000449264 NPHP1O15259 732 aa18.28■□□□□ 0.52
TNF-208ENST00000449264 SIRT2Q8IXJ6 389 aa18.28■□□□□ 0.52
TNF-208ENST00000449264 RPAP2Q8IXW5 612 aaPredicted RBP18.28■□□□□ 0.52
TNF-208ENST00000449264 PDGFDQ9GZP0 370 aaPredicted RBP18.28■□□□□ 0.52
TNF-208ENST00000449264 CDHR2Q9BYE9 1310 aa18.28■□□□□ 0.52
TNF-208ENST00000449264 IGHDP01880 384 aa18.27■□□□□ 0.52
TNF-208ENST00000449264 GTF2E1P29083 439 aaPredicted RBP18.27■□□□□ 0.52
TNF-208ENST00000449264 NYXQ9GZU5 481 aa18.27■□□□□ 0.52
TNF-208ENST00000449264 RWDD1Q9H446 243 aaPredicted RBP18.27■□□□□ 0.52
TNF-208ENST00000449264 PNMA6EA0A0J9YXQ4 647 aa18.26■□□□□ 0.51
TNF-208ENST00000449264 NLGN1Q8N2Q7 840 aa18.26■□□□□ 0.51
TNF-208ENST00000449264 CHMP3Q9Y3E7 222 aa18.26■□□□□ 0.51
TNF-208ENST00000449264 SRGAP3O43295 1099 aa18.25■□□□□ 0.51
TNF-208ENST00000449264 HMMRO75330 724 aa18.25■□□□□ 0.51
TNF-208ENST00000449264 HCLS1P14317 486 aaPredicted RBP18.25■□□□□ 0.51
TNF-208ENST00000449264 HDAC1Q13547 482 aaPredicted RBP18.25■□□□□ 0.51
TNF-208ENST00000449264 ERFEQ4G0M1 354 aa18.25■□□□□ 0.51
TNF-208ENST00000449264 ABCC12Q96J65 1359 aa18.25■□□□□ 0.51
TNF-208ENST00000449264 ATP8B2P98198 1209 aa18.25■□□□□ 0.51
TNF-208ENST00000449264 DDR1Q08345 913 aa18.25■□□□□ 0.51
TNF-208ENST00000449264 CCDC24Q8N4L8 307 aa18.25■□□□□ 0.51
TNF-208ENST00000449264 TM4SF1P30408 202 aa18.24■□□□□ 0.51
TNF-208ENST00000449264 FOXO4P98177 505 aa18.24■□□□□ 0.51
TNF-208ENST00000449264 R3HDM1Q15032 1099 aaKnown RBP18.24■□□□□ 0.51
TNF-208ENST00000449264 LMBR1LQ6UX01 489 aa18.24■□□□□ 0.51
TNF-208ENST00000449264 TPTE2Q6XPS3 522 aa18.24■□□□□ 0.51
TNF-208ENST00000449264 CNBD1Q8NA66 436 aa18.24■□□□□ 0.51
TNF-208ENST00000449264 CCDC85AQ96PX6 553 aaPredicted RBP18.24■□□□□ 0.51
TNF-208ENST00000449264 KDM2BQ8NHM5 1336 aa18.23■□□□□ 0.51
TNF-208ENST00000449264 POLRMTO00411 1230 aaKnown RBP18.23■□□□□ 0.51
TNF-208ENST00000449264 MMP10P09238 476 aa18.23■□□□□ 0.51
TNF-208ENST00000449264 RABL6Q3YEC7 729 aaPredicted RBP18.23■□□□□ 0.51
TNF-208ENST00000449264 PLA2G12BQ9BX93 195 aa18.23■□□□□ 0.51
TNF-208ENST00000449264 TNRC6CQ9HCJ0 1690 aaKnown RBP18.23■□□□□ 0.51
TNF-208ENST00000449264 PDE8AO60658 829 aa18.22■□□□□ 0.51
TNF-208ENST00000449264 SERPINB2P05120 415 aa18.22■□□□□ 0.51
TNF-208ENST00000449264 CTSWP56202 376 aa18.22■□□□□ 0.51
TNF-208ENST00000449264 MTX1Q13505 466 aa18.22■□□□□ 0.51
TNF-208ENST00000449264 CENPQQ7L2Z9 268 aaPredicted RBP18.22■□□□□ 0.51
TNF-208ENST00000449264 PRR5LQ6MZQ0 368 aa18.22■□□□□ 0.51
TNF-208ENST00000449264 NRXN2Q9P2S2 1712 aa18.21■□□□□ 0.51
TNF-208ENST00000449264 PSDA5PKW4 1024 aaPredicted RBP18.21■□□□□ 0.51
TNF-208ENST00000449264 HSP90B1P14625 803 aaKnown RBP18.21■□□□□ 0.51
TNF-208ENST00000449264 FAM161AQ3B820 660 aa18.21■□□□□ 0.51
TNF-208ENST00000449264 SSH3Q8TE77 659 aa18.21■□□□□ 0.51
TNF-208ENST00000449264 PARP3Q9Y6F1 533 aa18.21■□□□□ 0.51
TNF-208ENST00000449264 ST5P78524 1137 aa18.2■□□□□ 0.5
TNF-208ENST00000449264 POLA2Q14181 598 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms