RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 FMNL3Q8IVF7 1028 aa9.9□□□□□ -0.83
PTPN3-204ENST00000446349 ANKRD62A6NC57 917 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 TSPY2A6NKD2 308 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 PARP10Q53GL7 1025 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 CDCA7LQ96GN5 454 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 PLXNC1O60486 1568 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 FAM43AQ8N2R8 423 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 NCOA7Q8NI08 942 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 TNPO1Q92973 898 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 C8orf37Q96NL8 207 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 UPF3BQ9BZI7 483 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 DNAJC5BQ9UF47 199 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 ATP7AQ04656 1500 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 NPATQ14207 1427 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 NUP153P49790 1475 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC83Q8IWF9 413 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 ANO10Q9NW15 660 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 PIK3C2GO75747 1445 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 STK3Q13188 491 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 AMER1Q5JTC6 1135 aaPredicted RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 TCOF1Q13428 1488 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 ZNF710Q8N1W2 664 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 ESR2Q92731 530 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 RBM17Q96I25 401 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 DNMT1P26358 1616 aaKnown RBP9.88□□□□□ -0.83
PTPN3-204ENST00000446349 SPA17Q15506 151 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 RARSP54136 660 aaKnown RBP9.88□□□□□ -0.83
PTPN3-204ENST00000446349 GBP3Q9H0R5 595 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 IL1RAPL2Q9NP60 686 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 MAP3K11Q16584 847 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 BOLA2Q9H3K6 86 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 PRPF40AO75400 957 aaKnown RBP9.88□□□□□ -0.83
PTPN3-204ENST00000446349 RMND1Q9NWS8 449 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 KIF1BO60333 1816 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 GOLGA8AA7E2F4 631 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 GOLGA8BA8MQT2 603 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 ANAPC15P60006 121 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC91Q7Z6B0 441 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 STK24Q9Y6E0 443 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 GLT8D2Q9H1C3 349 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 MCM5P33992 734 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 KIAA1328Q86T90 577 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 LRRFIP2Q9Y608 721 aaKnown RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 YTHDC2Q9H6S0 1430 aaKnown RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 PRKCSHP14314 528 aaPredicted RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 ZFYVE16Q7Z3T8 1539 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 KCNA6P17658 529 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 CALML3P27482 149 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 PLVAPQ9BX97 442 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 TAOK3Q9H2K8 898 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 ZSCAN16Q9H4T2 348 aaPredicted RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 LIMCH1Q9UPQ0 1083 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 EXOC6BQ9Y2D4 811 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 IFI16Q16666 785 aaKnown RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 SSH1Q8WYL5 1049 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 TTC12Q9H892 705 aaPredicted RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 SEPT11Q9NVA2 429 aaKnown RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 CEBPZQ03701 1054 aaKnown RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TMEM67Q5HYA8 995 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 EMILIN1Q9Y6C2 1016 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 GPTP24298 496 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 KSR2Q6VAB6 950 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 GIGYF2Q6Y7W6 1299 aaKnown RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 CACNA2D4Q7Z3S7 1137 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 HOOK3Q86VS8 718 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TFCP2L1Q9NZI6 479 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 RTL9Q8NET4 1388 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 ZSCAN12O43309 604 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 USO1O60763 962 aaKnown RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 ZBTB3Q9H5J0 574 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 GRM8O00222 908 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TSPY3P0CV98 308 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TSPY8P0CW00 308 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 IARSP41252 1262 aaKnown RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 BRDTQ58F21 947 aaPredicted RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TRAPPC3LQ5T215 181 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 UBE3BQ7Z3V4 1068 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 MAP3K5Q99683 1374 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 ATP2B3Q16720 1220 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 STK11IPQ8N1F8 1099 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 USHBP1Q8N6Y0 703 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC85AQ96PX6 553 aaPredicted RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 MAPKBP1O60336 1514 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC174Q6PII3 467 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 HOXB7P09629 217 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 NIP7Q9Y221 180 aaKnown RBP eCLIP9.85□□□□□ -0.83
PTPN3-204ENST00000446349 GOLIM4O00461 696 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 CLEC11AQ9Y240 323 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 PIBF1Q8WXW3 757 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 MAP9Q49MG5 647 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 IP6K1Q92551 441 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 MAP4K4O95819 1239 aaPredicted RBP9.85□□□□□ -0.83
PTPN3-204ENST00000446349 NAA16Q6N069 864 aaPredicted RBP9.85□□□□□ -0.83
PTPN3-204ENST00000446349 DZIP3Q86Y13 1208 aaKnown RBP9.85□□□□□ -0.83
PTPN3-204ENST00000446349 NEMFO60524 1076 aa9.84□□□□□ -0.83
PTPN3-204ENST00000446349 UBA7P41226 1012 aa9.84□□□□□ -0.83
PTPN3-204ENST00000446349 NUTM1Q86Y26 1132 aa9.84□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC112Q8NEF3 446 aa9.84□□□□□ -0.83
PTPN3-204ENST00000446349 EDC4Q6P2E9 1401 aaKnown RBP9.84□□□□□ -0.83
PTPN3-204ENST00000446349 PRAG1Q86YV5 1406 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms