RNA–Protein interactions for RNA: ENST00000442560.5

RFX3-206, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-206ENST00000442560 MCM10Q7L590 875 aa9.5□□□□□ -0.89
RFX3-206ENST00000442560 RTF1Q92541 710 aaKnown RBP9.5□□□□□ -0.89
RFX3-206ENST00000442560 KRTAP3-3Q9BYR6 98 aa9.5□□□□□ -0.89
RFX3-206ENST00000442560 KRTAP3-2Q9BYR7 98 aa9.5□□□□□ -0.89
RFX3-206ENST00000442560 PDZRN3Q9UPQ7 1066 aa9.5□□□□□ -0.89
RFX3-206ENST00000442560 BRCA1P38398 1863 aaKnown RBP9.5□□□□□ -0.89
RFX3-206ENST00000442560 PPP2R1AP30153 589 aa9.49□□□□□ -0.89
RFX3-206ENST00000442560 ST5P78524 1137 aa9.49□□□□□ -0.89
RFX3-206ENST00000442560 CNBD1Q8NA66 436 aa9.49□□□□□ -0.89
RFX3-206ENST00000442560 ARFGEF1Q9Y6D6 1849 aa9.48□□□□□ -0.89
RFX3-206ENST00000442560 POTECB2RU33 542 aa9.48□□□□□ -0.89
RFX3-206ENST00000442560 SNRPA1P09661 255 aaKnown RBP9.48□□□□□ -0.89
RFX3-206ENST00000442560 ERFEQ4G0M1 354 aa9.48□□□□□ -0.89
RFX3-206ENST00000442560 JMYQ8N9B5 988 aa9.48□□□□□ -0.89
RFX3-206ENST00000442560 CNKSR1Q969H4 720 aa9.48□□□□□ -0.89
RFX3-206ENST00000442560 NRXN2Q9P2S2 1712 aa9.48□□□□□ -0.89
RFX3-206ENST00000442560 FAM177BA6PVY3 158 aa9.47□□□□□ -0.89
RFX3-206ENST00000442560 SRGNP10124 158 aa9.47□□□□□ -0.89
RFX3-206ENST00000442560 PSEN1P49768 467 aa9.47□□□□□ -0.89
RFX3-206ENST00000442560 STYK1Q6J9G0 422 aa9.47□□□□□ -0.89
RFX3-206ENST00000442560 PRPF40BQ6NWY9 871 aaKnown RBP9.47□□□□□ -0.89
RFX3-206ENST00000442560 NBPF5PQ86XG9 351 aaPredicted RBP9.47□□□□□ -0.89
RFX3-206ENST00000442560 MASTLQ96GX5 879 aa9.47□□□□□ -0.89
RFX3-206ENST00000442560 L3MBTL3Q96JM7 780 aaPredicted RBP9.47□□□□□ -0.89
RFX3-206ENST00000442560 TAOK3Q9H2K8 898 aa9.47□□□□□ -0.89
RFX3-206ENST00000442560 UBR2Q8IWV8 1755 aa9.46□□□□□ -0.9
RFX3-206ENST00000442560 NBPF26B4DH59 902 aa9.46□□□□□ -0.9
RFX3-206ENST00000442560 DDNO94850 711 aaPredicted RBP9.46□□□□□ -0.9
RFX3-206ENST00000442560 TAF7Q15545 349 aaPredicted RBP9.46□□□□□ -0.9
RFX3-206ENST00000442560 NBPF10Q6P3W6 841 aaKnown RBP9.46□□□□□ -0.9
RFX3-206ENST00000442560 CLEC4GQ6UXB4 293 aa9.46□□□□□ -0.9
RFX3-206ENST00000442560 NBPF15Q8N660 670 aa9.46□□□□□ -0.9
RFX3-206ENST00000442560 MIS18AQ9NYP9 233 aa9.46□□□□□ -0.9
RFX3-206ENST00000442560 NIP7Q9Y221 180 aaKnown RBP eCLIP9.46□□□□□ -0.9
RFX3-206ENST00000442560 ZNF652Q9Y2D9 606 aa9.46□□□□□ -0.9
RFX3-206ENST00000442560 AFDNP55196 1824 aaKnown RBP9.46□□□□□ -0.9
RFX3-206ENST00000442560 HTATSF1O43719 755 aaKnown RBP9.45□□□□□ -0.9
RFX3-206ENST00000442560 COL13A1Q5TAT6 717 aaPredicted RBP9.45□□□□□ -0.9
RFX3-206ENST00000442560 ZNF467Q7Z7K2 595 aaPredicted RBP9.45□□□□□ -0.9
RFX3-206ENST00000442560 NGEFQ8N5V2 710 aa9.45□□□□□ -0.9
RFX3-206ENST00000442560 LTBP3Q9NS15 1303 aa9.45□□□□□ -0.9
RFX3-206ENST00000442560 CEP350Q5VT06 3117 aa9.44□□□□□ -0.9
RFX3-206ENST00000442560 NPR1P16066 1061 aa9.44□□□□□ -0.9
RFX3-206ENST00000442560 HLFQ16534 295 aa9.44□□□□□ -0.9
RFX3-206ENST00000442560 CCDC93Q567U6 631 aa9.44□□□□□ -0.9
RFX3-206ENST00000442560 SOGA3Q5TF21 947 aa9.44□□□□□ -0.9
RFX3-206ENST00000442560 TPTE2Q6XPS3 522 aa9.44□□□□□ -0.9
RFX3-206ENST00000442560 C7orf43Q8WVR3 580 aa9.44□□□□□ -0.9
RFX3-206ENST00000442560 WDR90Q96KV7 1748 aa9.44□□□□□ -0.9
RFX3-206ENST00000442560 NEFMP07197 916 aa9.43□□□□□ -0.9
RFX3-206ENST00000442560 HSPA1AP0DMV8 641 aaKnown RBP9.43□□□□□ -0.9
RFX3-206ENST00000442560 HSPA1BP0DMV9 641 aaKnown RBP9.43□□□□□ -0.9
RFX3-206ENST00000442560 GTF2E1P29083 439 aaPredicted RBP9.43□□□□□ -0.9
RFX3-206ENST00000442560 OLFM4Q6UX06 510 aa9.43□□□□□ -0.9
RFX3-206ENST00000442560 RRP7AQ9Y3A4 280 aaKnown RBP9.43□□□□□ -0.9
RFX3-206ENST00000442560 SCN7AQ01118 1682 aa9.42□□□□□ -0.9
RFX3-206ENST00000442560 TNRC6CQ9HCJ0 1690 aaKnown RBP9.42□□□□□ -0.9
RFX3-206ENST00000442560 KLRG2A4D1S0 409 aaPredicted RBP9.42□□□□□ -0.9
RFX3-206ENST00000442560 FKBP4Q02790 459 aaKnown RBP eCLIP9.42□□□□□ -0.9
RFX3-206ENST00000442560 GSE1Q14687 1217 aa9.42□□□□□ -0.9
RFX3-206ENST00000442560 PNISRQ8TF01 805 aaKnown RBP9.42□□□□□ -0.9
RFX3-206ENST00000442560 ZNF277Q9NRM2 450 aaPredicted RBP9.42□□□□□ -0.9
RFX3-206ENST00000442560 SBF1O95248 1867 aa9.42□□□□□ -0.9
RFX3-206ENST00000442560 RGL2O15211 777 aa9.41□□□□□ -0.9
RFX3-206ENST00000442560 MYL6BP14649 208 aa9.41□□□□□ -0.9
RFX3-206ENST00000442560 ALDH1B1P30837 517 aa9.41□□□□□ -0.9
RFX3-206ENST00000442560 EIF4A1P60842 406 aaKnown RBP9.41□□□□□ -0.9
RFX3-206ENST00000442560 TTLL7Q6ZT98 887 aa9.41□□□□□ -0.9
RFX3-206ENST00000442560 NUTM1Q86Y26 1132 aa9.41□□□□□ -0.9
RFX3-206ENST00000442560 THUMPD2Q9BTF0 503 aaKnown RBP9.41□□□□□ -0.9
RFX3-206ENST00000442560 MKRN1Q9UHC7 482 aaKnown RBP9.41□□□□□ -0.9
RFX3-206ENST00000442560 SIPA1L3O60292 1781 aaPredicted RBP9.41□□□□□ -0.9
RFX3-206ENST00000442560 DLEC1Q9Y238 1755 aa9.41□□□□□ -0.9
RFX3-206ENST00000442560 ANKRD31Q8N7Z5 1873 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 COL11A2P13942 1736 aaPredicted RBP9.4□□□□□ -0.9
RFX3-206ENST00000442560 ZNF541Q9H0D2 1346 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 IQCA1LA6NCM1 817 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 GPTP24298 496 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 IARSP41252 1262 aaKnown RBP9.4□□□□□ -0.9
RFX3-206ENST00000442560 NFE2L2Q16236 605 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 EAPPQ56P03 285 aaPredicted RBP9.4□□□□□ -0.9
RFX3-206ENST00000442560 RTKN2Q8IZC4 609 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 TNS4Q8IZW8 715 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 SYNE4Q8N205 404 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 PLEKHF1Q96S99 279 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 ZBTB3Q9H5J0 574 aa9.4□□□□□ -0.9
RFX3-206ENST00000442560 TAF1DQ9H5J8 278 aaPredicted RBP9.4□□□□□ -0.9
RFX3-206ENST00000442560 VIRMAQ69YN4 1812 aaKnown RBP9.4□□□□□ -0.91
RFX3-206ENST00000442560 ABCC12Q96J65 1359 aa9.39□□□□□ -0.91
RFX3-206ENST00000442560 MAP3K15Q6ZN16 1313 aa9.39□□□□□ -0.91
RFX3-206ENST00000442560 ERVV-1B6SEH8 477 aa9.39□□□□□ -0.91
RFX3-206ENST00000442560 KIF6Q6ZMV9 814 aa9.39□□□□□ -0.91
RFX3-206ENST00000442560 NYXQ9GZU5 481 aa9.39□□□□□ -0.91
RFX3-206ENST00000442560 FBXO3Q9UK99 471 aa9.39□□□□□ -0.91
RFX3-206ENST00000442560 TIAM2Q8IVF5 1701 aa9.39□□□□□ -0.91
RFX3-206ENST00000442560 SLX4Q8IY92 1834 aa9.38□□□□□ -0.91
RFX3-206ENST00000442560 TCERG1O14776 1098 aaKnown RBP9.38□□□□□ -0.91
RFX3-206ENST00000442560 VASPP50552 380 aaPredicted RBP9.38□□□□□ -0.91
RFX3-206ENST00000442560 SUSD4Q5VX71 490 aa9.38□□□□□ -0.91
RFX3-206ENST00000442560 LDHDQ86WU2 507 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms