RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 KIAA1211Q6ZU35 1233 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 NUTM1Q86Y26 1132 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 GLI3P10071 1580 aa7.35□□□□□ -1.23
VPS50-205ENST00000441602 USP42Q9H9J4 1324 aaKnown RBP7.34□□□□□ -1.23
VPS50-205ENST00000441602 CCDC57Q2TAC2 916 aa7.34□□□□□ -1.23
VPS50-205ENST00000441602 LMBR1LQ6UX01 489 aa7.34□□□□□ -1.23
VPS50-205ENST00000441602 IL15P40933 162 aaPredicted RBP7.34□□□□□ -1.23
VPS50-205ENST00000441602 PARP10Q53GL7 1025 aa7.34□□□□□ -1.23
VPS50-205ENST00000441602 RTL5Q5HYW3 569 aaPredicted RBP7.34□□□□□ -1.23
VPS50-205ENST00000441602 ARFGEF2Q9Y6D5 1785 aa7.34□□□□□ -1.23
VPS50-205ENST00000441602 SALL3Q9BXA9 1300 aa7.34□□□□□ -1.23
VPS50-205ENST00000441602 CDHR2Q9BYE9 1310 aa7.34□□□□□ -1.23
VPS50-205ENST00000441602 DOT1LQ8TEK3 1739 aa7.34□□□□□ -1.24
VPS50-205ENST00000441602 MSH5O43196 834 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 RABEP1Q15276 862 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 DIAPH3Q9NSV4 1193 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 PA2G4Q9UQ80 394 aaKnown RBP7.33□□□□□ -1.24
VPS50-205ENST00000441602 ZBTB1Q9Y2K1 713 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 ITGB4P16144 1822 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 RGL2O15211 777 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 ZBTB38Q8NAP3 1195 aaPredicted RBP7.33□□□□□ -1.24
VPS50-205ENST00000441602 AK7Q96M32 723 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 ANP32EQ9BTT0 268 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 PLA2G12BQ9BX93 195 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 SIL1Q9H173 461 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 GPR108Q9NPR9 543 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 AFF2P51816 1311 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 BCL9LQ86UU0 1499 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 HSPA1LP34931 641 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 LRRFIP1Q32MZ4 808 aaKnown RBP7.33□□□□□ -1.24
VPS50-205ENST00000441602 EVI5LQ96CN4 794 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 CEP126Q9P2H0 1117 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 AKAP2Q9Y2D5 859 aa7.33□□□□□ -1.24
VPS50-205ENST00000441602 AFDNP55196 1824 aaKnown RBP7.33□□□□□ -1.24
VPS50-205ENST00000441602 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.32□□□□□ -1.24
VPS50-205ENST00000441602 CIAO1O76071 339 aa7.32□□□□□ -1.24
VPS50-205ENST00000441602 CASP7P55210 303 aa7.32□□□□□ -1.24
VPS50-205ENST00000441602 KAZALD1Q96I82 304 aa7.32□□□□□ -1.24
VPS50-205ENST00000441602 GJD4Q96KN9 370 aaPredicted RBP7.32□□□□□ -1.24
VPS50-205ENST00000441602 TRMT112Q9UI30 125 aaKnown RBP7.32□□□□□ -1.24
VPS50-205ENST00000441602 KAT6BQ8WYB5 2073 aa7.32□□□□□ -1.24
VPS50-205ENST00000441602 CRKLP46109 303 aaKnown RBP7.32□□□□□ -1.24
VPS50-205ENST00000441602 IFIT5Q13325 482 aaKnown RBP7.32□□□□□ -1.24
VPS50-205ENST00000441602 ESYT1Q9BSJ8 1104 aa7.32□□□□□ -1.24
VPS50-205ENST00000441602 EYA2O00167 538 aa7.32□□□□□ -1.24
VPS50-205ENST00000441602 HSP90AA1P07900 732 aaKnown RBP7.32□□□□□ -1.24
VPS50-205ENST00000441602 SNX21Q969T3 373 aa7.32□□□□□ -1.24
VPS50-205ENST00000441602 ANKRD18BA2A2Z9 1011 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 ST18O60284 1047 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 CHMLP26374 656 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 EIF5P55010 431 aaKnown RBP7.31□□□□□ -1.24
VPS50-205ENST00000441602 EPHA10Q5JZY3 1008 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 NLRP10Q86W26 655 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 TICAM2Q86XR7 235 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 PDE8AO60658 829 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 GPTP24298 496 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 FOXO4P98177 505 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 PTPN12Q05209 780 aaKnown RBP7.31□□□□□ -1.24
VPS50-205ENST00000441602 GORABQ5T7V8 394 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 JARID2Q92833 1246 aaPredicted RBP7.31□□□□□ -1.24
VPS50-205ENST00000441602 UTP14AQ9BVJ6 771 aaKnown RBP7.31□□□□□ -1.24
VPS50-205ENST00000441602 ANO2Q9NQ90 1003 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 RFX5P48382 616 aaPredicted RBP7.31□□□□□ -1.24
VPS50-205ENST00000441602 TNNI3KQ59H18 835 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 RC3H1Q5TC82 1133 aaKnown RBP7.31□□□□□ -1.24
VPS50-205ENST00000441602 TBC1D2BQ9UPU7 963 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 FPGT-TNNI3KV9GXZ4 949 aa7.31□□□□□ -1.24
VPS50-205ENST00000441602 SH3TC1Q8TE82 1336 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 RAD50Q92878 1312 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 CNTNAP4Q9C0A0 1308 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 NUP188Q5SRE5 1749 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 IRS4O14654 1257 aaPredicted RBP7.3□□□□□ -1.24
VPS50-205ENST00000441602 SASH1O94885 1247 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 ANAPC15P60006 121 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 PI4K2BQ8TCG2 481 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 USP26Q9BXU7 913 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 CCDC8Q9H0W5 538 aaPredicted RBP7.3□□□□□ -1.24
VPS50-205ENST00000441602 ATRNO75882 1429 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 MCM2P49736 904 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 TFCP2Q12800 502 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 CLEC4GQ6UXB4 293 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 SLC4A9Q96Q91 983 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 FSD1Q9BTV5 496 aa7.3□□□□□ -1.24
VPS50-205ENST00000441602 RFX7Q2KHR2 1363 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 ATP5JP18859 108 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 TSHZ3Q63HK5 1081 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 ZNF34Q8IZ26 560 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 EAF2Q96CJ1 260 aaPredicted RBP7.29□□□□□ -1.24
VPS50-205ENST00000441602 NEUROD6Q96NK8 337 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 GTF2E1P29083 439 aaPredicted RBP7.29□□□□□ -1.24
VPS50-205ENST00000441602 CTSWP56202 376 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 CCDC158Q5M9N0 1113 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 INTS5Q6P9B9 1019 aaKnown RBP7.29□□□□□ -1.24
VPS50-205ENST00000441602 CNNM1Q9NRU3 951 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 CCNL1Q9UK58 526 aaPredicted RBP7.29□□□□□ -1.24
VPS50-205ENST00000441602 CICQ96RK0 1608 aaPredicted RBP7.29□□□□□ -1.24
VPS50-205ENST00000441602 TJP1Q07157 1748 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 KCNJ4P48050 445 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 CCDC152Q4G0S7 254 aa7.29□□□□□ -1.24
VPS50-205ENST00000441602 SEPT12Q8IYM1 358 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms