RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 PDE3BQ13370 1112 aa7.15□□□□□ -1.26
PTPN4-206ENST00000441089 BARGINQ6ZT62 677 aa7.15□□□□□ -1.26
PTPN4-206ENST00000441089 PCGF6Q9BYE7 350 aa7.15□□□□□ -1.26
PTPN4-206ENST00000441089 ANKRD50Q9ULJ7 1429 aa7.15□□□□□ -1.27
PTPN4-206ENST00000441089 SBNO1A3KN83 1393 aa7.14□□□□□ -1.27
PTPN4-206ENST00000441089 ZMYND10O75800 440 aa7.14□□□□□ -1.27
PTPN4-206ENST00000441089 RSBN1LQ6PCB5 846 aaPredicted RBP7.14□□□□□ -1.27
PTPN4-206ENST00000441089 TNS4Q8IZW8 715 aa7.14□□□□□ -1.27
PTPN4-206ENST00000441089 C1QTNF2Q9BXJ5 285 aa7.14□□□□□ -1.27
PTPN4-206ENST00000441089 MTFR1LQ9H019 292 aa7.14□□□□□ -1.27
PTPN4-206ENST00000441089 FMN2Q9NZ56 1722 aa7.14□□□□□ -1.27
PTPN4-206ENST00000441089 CHIC2Q9UKJ5 165 aa7.14□□□□□ -1.27
PTPN4-206ENST00000441089 KIF1BO60333 1816 aa7.13□□□□□ -1.27
PTPN4-206ENST00000441089 SBF2Q86WG5 1849 aa7.13□□□□□ -1.27
PTPN4-206ENST00000441089 RGPD8O14715 1765 aaPredicted RBP7.13□□□□□ -1.27
PTPN4-206ENST00000441089 NAIPQ13075 1403 aa7.13□□□□□ -1.27
PTPN4-206ENST00000441089 SPATA31A1Q5TZJ5 1347 aa7.13□□□□□ -1.27
PTPN4-206ENST00000441089 FIGNL2A6NMB9 653 aa7.13□□□□□ -1.27
PTPN4-206ENST00000441089 PLSCR1O15162 318 aa7.13□□□□□ -1.27
PTPN4-206ENST00000441089 ARHGEF15O94989 841 aa7.13□□□□□ -1.27
PTPN4-206ENST00000441089 FSHRP23945 695 aa7.13□□□□□ -1.27
PTPN4-206ENST00000441089 ZC3H15Q8WU90 426 aaKnown RBP7.13□□□□□ -1.27
PTPN4-206ENST00000441089 GPBP1L1Q9HC44 474 aaPredicted RBP7.13□□□□□ -1.27
PTPN4-206ENST00000441089 CBLBQ13191 982 aa7.12□□□□□ -1.27
PTPN4-206ENST00000441089 COL13A1Q5TAT6 717 aaPredicted RBP7.12□□□□□ -1.27
PTPN4-206ENST00000441089 GPAT2Q6NUI2 795 aa7.12□□□□□ -1.27
PTPN4-206ENST00000441089 SH3RF1Q7Z6J0 888 aa7.12□□□□□ -1.27
PTPN4-206ENST00000441089 ARXQ96QS3 562 aa7.12□□□□□ -1.27
PTPN4-206ENST00000441089 TBC1D2Q9BYX2 928 aa7.12□□□□□ -1.27
PTPN4-206ENST00000441089 SPDYE5A6NIY4 337 aa7.11□□□□□ -1.27
PTPN4-206ENST00000441089 GRIN3BO60391 1043 aa7.11□□□□□ -1.27
PTPN4-206ENST00000441089 IRS1P35568 1242 aa7.11□□□□□ -1.27
PTPN4-206ENST00000441089 GIGYF2Q6Y7W6 1299 aaKnown RBP7.11□□□□□ -1.27
PTPN4-206ENST00000441089 KRI1Q8N9T8 703 aaKnown RBP7.11□□□□□ -1.27
PTPN4-206ENST00000441089 BEGAINQ9BUH8 593 aa7.11□□□□□ -1.27
PTPN4-206ENST00000441089 ATP10DQ9P241 1426 aa7.1□□□□□ -1.27
PTPN4-206ENST00000441089 AATKQ6ZMQ8 1374 aa7.1□□□□□ -1.27
PTPN4-206ENST00000441089 TTLL8A6PVC2 850 aa7.1□□□□□ -1.27
PTPN4-206ENST00000441089 CCDC155Q8N6L0 562 aa7.1□□□□□ -1.27
PTPN4-206ENST00000441089 NANOS1Q8WY41 292 aaKnown RBP7.1□□□□□ -1.27
PTPN4-206ENST00000441089 PDGFDQ9GZP0 370 aaPredicted RBP7.1□□□□□ -1.27
PTPN4-206ENST00000441089 STK32BQ9NY57 414 aa7.1□□□□□ -1.27
PTPN4-206ENST00000441089 TTLL12Q14166 644 aaPredicted RBP7.09□□□□□ -1.27
PTPN4-206ENST00000441089 AGERQ15109 404 aa7.09□□□□□ -1.27
PTPN4-206ENST00000441089 AMHR2Q16671 573 aa7.09□□□□□ -1.27
PTPN4-206ENST00000441089 SVOPQ8N4V2 548 aa7.09□□□□□ -1.27
PTPN4-206ENST00000441089 PRDM11Q9NQV5 511 aa7.09□□□□□ -1.27
PTPN4-206ENST00000441089 IFT172Q9UG01 1749 aa7.09□□□□□ -1.27
PTPN4-206ENST00000441089 PARP4Q9UKK3 1724 aaKnown RBP7.09□□□□□ -1.27
PTPN4-206ENST00000441089 SLC35F4A4IF30 521 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 SPTLC1O15269 473 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 SLURP2P0DP57 97 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 FAM50AQ14320 339 aaKnown RBP7.08□□□□□ -1.28
PTPN4-206ENST00000441089 SLC15A2Q16348 729 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.08□□□□□ -1.28
PTPN4-206ENST00000441089 XP32Q5T750 250 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 SH3BP5LQ7L8J4 393 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 DNAJC5GQ8N7S2 189 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 DNMT3AQ9Y6K1 912 aaPredicted RBP7.08□□□□□ -1.28
PTPN4-206ENST00000441089 NRXN1Q9ULB1 1477 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 ALS2Q96Q42 1657 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 KAT6BQ8WYB5 2073 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 OVOS2A0A0G2JMS6 1433 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 OVOS2A0A0J9YW53 1432 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 OVOS2Q6IE36 1432 aa7.08□□□□□ -1.28
PTPN4-206ENST00000441089 UPP2O95045 317 aa7.07□□□□□ -1.28
PTPN4-206ENST00000441089 ITGB2P05107 769 aa7.07□□□□□ -1.28
PTPN4-206ENST00000441089 QPCTQ16769 361 aa7.07□□□□□ -1.28
PTPN4-206ENST00000441089 CSPP1Q1MSJ5 1256 aa7.07□□□□□ -1.28
PTPN4-206ENST00000441089 BPHLQ86WA6 291 aaPredicted RBP7.07□□□□□ -1.28
PTPN4-206ENST00000441089 VWA5B2Q8N398 1253 aa7.07□□□□□ -1.28
PTPN4-206ENST00000441089 TSEN34Q9BSV6 310 aaKnown RBP7.07□□□□□ -1.28
PTPN4-206ENST00000441089 STRN4Q9NRL3 753 aa7.07□□□□□ -1.28
PTPN4-206ENST00000441089 KNDC1Q76NI1 1749 aa7.07□□□□□ -1.28
PTPN4-206ENST00000441089 TRPM3Q9HCF6 1732 aaPredicted RBP7.07□□□□□ -1.28
PTPN4-206ENST00000441089 CRYBG1Q9Y4K1 1723 aa7.07□□□□□ -1.28
PTPN4-206ENST00000441089 DHX57Q6P158 1386 aaKnown RBP7.07□□□□□ -1.28
PTPN4-206ENST00000441089 PDE4DIPQ5VU43 2346 aa7.06□□□□□ -1.28
PTPN4-206ENST00000441089 ITGAEP38570 1179 aa7.06□□□□□ -1.28
PTPN4-206ENST00000441089 VASH1Q7L8A9 365 aaPredicted RBP7.06□□□□□ -1.28
PTPN4-206ENST00000441089 USP35Q9P2H5 1018 aa7.06□□□□□ -1.28
PTPN4-206ENST00000441089 MAP4K5Q9Y4K4 846 aa7.06□□□□□ -1.28
PTPN4-206ENST00000441089 TECPR2O15040 1411 aa7.06□□□□□ -1.28
PTPN4-206ENST00000441089 WDR90Q96KV7 1748 aa7.06□□□□□ -1.28
PTPN4-206ENST00000441089 PEAK1Q9H792 1746 aa7.06□□□□□ -1.28
PTPN4-206ENST00000441089 CLTCL1P53675 1640 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 RNF225M0QZC1 329 aaPredicted RBP7.05□□□□□ -1.28
PTPN4-206ENST00000441089 SPINT1O43278 529 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 POLD1P28340 1107 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 GJA5P36382 358 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 CTSOP43234 321 aaPredicted RBP7.05□□□□□ -1.28
PTPN4-206ENST00000441089 EVA1CP58658 441 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 LYPD4Q6UWN0 246 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 Q6ZVU0 165 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 TRMT44Q8IYL2 757 aaKnown RBP7.05□□□□□ -1.28
PTPN4-206ENST00000441089 CCDC116Q8IYX3 515 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 TCP11L2Q8N4U5 519 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 AGBL1Q96MI9 1066 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 ZBTB3Q9H5J0 574 aa7.05□□□□□ -1.28
PTPN4-206ENST00000441089 LIMD1Q9UGP4 676 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms