RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 CWC25Q9NXE8 425 aaPredicted RBP17.12■□□□□ 0.33
LIMD1-202ENST00000440097 TTC41PQ6P2S7 1318 aa17.12■□□□□ 0.33
LIMD1-202ENST00000440097 ST18O60284 1047 aa17.12■□□□□ 0.33
LIMD1-202ENST00000440097 IL25Q9H293 177 aa17.12■□□□□ 0.33
LIMD1-202ENST00000440097 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.12■□□□□ 0.33
LIMD1-202ENST00000440097 STARD3NLO95772 234 aa17.11■□□□□ 0.33
LIMD1-202ENST00000440097 CCDC173Q0VFZ6 552 aa17.11■□□□□ 0.33
LIMD1-202ENST00000440097 KCPQ6ZWJ8 1503 aa17.11■□□□□ 0.33
LIMD1-202ENST00000440097 LMBR1LQ6UX01 489 aa17.11■□□□□ 0.33
LIMD1-202ENST00000440097 CWC27Q6UX04 472 aaKnown RBP17.11■□□□□ 0.33
LIMD1-202ENST00000440097 EAF2Q96CJ1 260 aaPredicted RBP17.11■□□□□ 0.33
LIMD1-202ENST00000440097 ATG3Q9NT62 314 aa17.11■□□□□ 0.33
LIMD1-202ENST00000440097 LAMB4A4D0S4 1761 aa17.11■□□□□ 0.33
LIMD1-202ENST00000440097 PTMSP20962 102 aa17.11■□□□□ 0.33
LIMD1-202ENST00000440097 PDCL3Q9H2J4 239 aa17.11■□□□□ 0.33
LIMD1-202ENST00000440097 DIAPH3Q9NSV4 1193 aa17.11■□□□□ 0.33
LIMD1-202ENST00000440097 SHANK3Q9BYB0 1731 aa17.1■□□□□ 0.33
LIMD1-202ENST00000440097 NASPP49321 788 aaPredicted RBP17.1■□□□□ 0.33
LIMD1-202ENST00000440097 COL14A1Q05707 1796 aaKnown RBP17.1■□□□□ 0.33
LIMD1-202ENST00000440097 PPP1R9BQ96SB3 815 aa17.1■□□□□ 0.33
LIMD1-202ENST00000440097 AFDNP55196 1824 aaKnown RBP17.1■□□□□ 0.33
LIMD1-202ENST00000440097 KIF6Q6ZMV9 814 aa17.09■□□□□ 0.33
LIMD1-202ENST00000440097 TEX13AQ9BXU3 409 aaPredicted RBP17.09■□□□□ 0.33
LIMD1-202ENST00000440097 TLR7Q9NYK1 1049 aaKnown RBP17.09■□□□□ 0.33
LIMD1-202ENST00000440097 ARFGEF2Q9Y6D5 1785 aa17.09■□□□□ 0.33
LIMD1-202ENST00000440097 GLI3P10071 1580 aa17.09■□□□□ 0.33
LIMD1-202ENST00000440097 TOM1O60784 492 aa17.08■□□□□ 0.33
LIMD1-202ENST00000440097 SSFA2P28290 1259 aa17.08■□□□□ 0.33
LIMD1-202ENST00000440097 PRIM1P49642 420 aaKnown RBP17.08■□□□□ 0.33
LIMD1-202ENST00000440097 NEK4P51957 841 aa17.08■□□□□ 0.33
LIMD1-202ENST00000440097 ZSCAN30Q86W11 494 aa17.08■□□□□ 0.33
LIMD1-202ENST00000440097 BOLA2Q9H3K6 86 aa17.08■□□□□ 0.32
LIMD1-202ENST00000440097 TNS2Q63HR2 1409 aa17.08■□□□□ 0.32
LIMD1-202ENST00000440097 PTPN12Q05209 780 aaKnown RBP17.07■□□□□ 0.32
LIMD1-202ENST00000440097 DDB1Q16531 1140 aa17.07■□□□□ 0.32
LIMD1-202ENST00000440097 AHDC1Q5TGY3 1603 aaPredicted RBP17.07■□□□□ 0.32
LIMD1-202ENST00000440097 UBR2Q8IWV8 1755 aa17.07■□□□□ 0.32
LIMD1-202ENST00000440097 CCDC191Q8NCU4 936 aa17.07■□□□□ 0.32
LIMD1-202ENST00000440097 COPRSQ9NQ92 184 aa17.07■□□□□ 0.32
LIMD1-202ENST00000440097 TOGARAM1Q9Y4F4 1720 aa17.07■□□□□ 0.32
LIMD1-202ENST00000440097 USP42Q9H9J4 1324 aaKnown RBP17.07■□□□□ 0.32
LIMD1-202ENST00000440097 TFCP2Q12800 502 aa17.06■□□□□ 0.32
LIMD1-202ENST00000440097 NOL8Q76FK4 1167 aaKnown RBP17.06■□□□□ 0.32
LIMD1-202ENST00000440097 PALD1Q9ULE6 856 aa17.06■□□□□ 0.32
LIMD1-202ENST00000440097 OFD1O75665 1012 aa17.06■□□□□ 0.32
LIMD1-202ENST00000440097 RABL6Q3YEC7 729 aaPredicted RBP17.06■□□□□ 0.32
LIMD1-202ENST00000440097 C8orf37Q96NL8 207 aa17.06■□□□□ 0.32
LIMD1-202ENST00000440097 AK9Q5TCS8 1911 aa17.06■□□□□ 0.32
LIMD1-202ENST00000440097 H7C1W4 665 aa17.06■□□□□ 0.32
LIMD1-202ENST00000440097 ANP32BQ92688 251 aaKnown RBP17.06■□□□□ 0.32
LIMD1-202ENST00000440097 ACSBG1Q96GR2 724 aa17.06■□□□□ 0.32
LIMD1-202ENST00000440097 SGSM2O43147 1006 aa17.05■□□□□ 0.32
LIMD1-202ENST00000440097 RUFY2Q8WXA3 655 aa17.05■□□□□ 0.32
LIMD1-202ENST00000440097 EVI5LQ96CN4 794 aa17.05■□□□□ 0.32
LIMD1-202ENST00000440097 DISP2A7MBM2 1401 aa17.05■□□□□ 0.32
LIMD1-202ENST00000440097 GOLGA6L22H0YM25 854 aa17.05■□□□□ 0.32
LIMD1-202ENST00000440097 MSNP26038 577 aaKnown RBP17.05■□□□□ 0.32
LIMD1-202ENST00000440097 CASP7P55210 303 aa17.05■□□□□ 0.32
LIMD1-202ENST00000440097 CCDC85AQ96PX6 553 aaPredicted RBP17.05■□□□□ 0.32
LIMD1-202ENST00000440097 DDX49Q9Y6V7 483 aaKnown RBP17.05■□□□□ 0.32
LIMD1-202ENST00000440097 TUBGCP6Q96RT7 1819 aa17.04■□□□□ 0.32
LIMD1-202ENST00000440097 SRCAPQ6ZRS2 3230 aa17.04■□□□□ 0.32
LIMD1-202ENST00000440097 RFX5P48382 616 aaPredicted RBP17.04■□□□□ 0.32
LIMD1-202ENST00000440097 PHLPP1O60346 1717 aa17.04■□□□□ 0.32
LIMD1-202ENST00000440097 COL16A1Q07092 1604 aaPredicted RBP17.04■□□□□ 0.32
LIMD1-202ENST00000440097 LTBP4Q8N2S1 1624 aa17.04■□□□□ 0.32
LIMD1-202ENST00000440097 GPTP24298 496 aa17.04■□□□□ 0.32
LIMD1-202ENST00000440097 FSD1Q9BTV5 496 aa17.04■□□□□ 0.32
LIMD1-202ENST00000440097 UPF3BQ9BZI7 483 aaKnown RBP17.04■□□□□ 0.32
LIMD1-202ENST00000440097 PAPPAQ13219 1627 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 FOXO4P98177 505 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 TCIRG1Q13488 830 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 KLHL40Q2TBA0 621 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 TNNI3KQ59H18 835 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 NEUROD6Q96NK8 337 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 FPGT-TNNI3KV9GXZ4 949 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 BCL9O00512 1426 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 SPATA31A1Q5TZJ5 1347 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 RBM10P98175 930 aaKnown RBP17.03■□□□□ 0.32
LIMD1-202ENST00000440097 FAM89AQ96GI7 184 aa17.03■□□□□ 0.32
LIMD1-202ENST00000440097 BAG4O95429 457 aaKnown RBP17.02■□□□□ 0.32
LIMD1-202ENST00000440097 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.02■□□□□ 0.32
LIMD1-202ENST00000440097 ZNF594Q96JF6 807 aaPredicted RBP17.02■□□□□ 0.31
LIMD1-202ENST00000440097 CDCA7Q9BWT1 371 aaPredicted RBP17.02■□□□□ 0.31
LIMD1-202ENST00000440097 ANAPC15P60006 121 aa17.01■□□□□ 0.31
LIMD1-202ENST00000440097 FAM182BQ5T319 152 aa17.01■□□□□ 0.31
LIMD1-202ENST00000440097 SLC4A9Q96Q91 983 aa17.01■□□□□ 0.31
LIMD1-202ENST00000440097 DBNLQ9UJU6 430 aaKnown RBP17.01■□□□□ 0.31
LIMD1-202ENST00000440097 ZBTB1Q9Y2K1 713 aa17.01■□□□□ 0.31
LIMD1-202ENST00000440097 KCNJ4P48050 445 aa17.01■□□□□ 0.31
LIMD1-202ENST00000440097 DNAJC2Q99543 621 aaKnown RBP17.01■□□□□ 0.31
LIMD1-202ENST00000440097 COL22A1Q8NFW1 1626 aaPredicted RBP17.01■□□□□ 0.31
LIMD1-202ENST00000440097 CCDC57Q2TAC2 916 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 TAF7LQ5H9L4 462 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 CLEC17AQ6ZS10 378 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 RAD50Q92878 1312 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 ITGB4P16144 1822 aa17■□□□□ 0.31
LIMD1-202ENST00000440097 CYP19A1P11511 503 aaPredicted RBP17■□□□□ 0.31
LIMD1-202ENST00000440097 EDC3Q96F86 508 aaKnown RBP17■□□□□ 0.31
LIMD1-202ENST00000440097 DBNDD2Q9BQY9 259 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms