RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 API5Q9BZZ5 524 aaKnown RBP10.36□□□□□ -0.75
HPS4-206ENST00000439453 ZNF710Q8N1W2 664 aa10.36□□□□□ -0.75
HPS4-206ENST00000439453 THUMPD2Q9BTF0 503 aaKnown RBP10.36□□□□□ -0.75
HPS4-206ENST00000439453 BAG6P46379 1132 aa10.35□□□□□ -0.75
HPS4-206ENST00000439453 SYAP1Q96A49 352 aaPredicted RBP10.35□□□□□ -0.75
HPS4-206ENST00000439453 HMGN5P82970 282 aaKnown RBP10.35□□□□□ -0.75
HPS4-206ENST00000439453 MPRIPQ6WCQ1 1025 aa10.35□□□□□ -0.75
HPS4-206ENST00000439453 TSC1Q92574 1164 aa10.35□□□□□ -0.75
HPS4-206ENST00000439453 DCAF5Q96JK2 942 aa10.35□□□□□ -0.75
HPS4-206ENST00000439453 LRP5O75197 1615 aa10.35□□□□□ -0.75
HPS4-206ENST00000439453 BRD1O95696 1058 aa10.35□□□□□ -0.75
HPS4-206ENST00000439453 GNAI1P63096 354 aa10.35□□□□□ -0.75
HPS4-206ENST00000439453 PIBF1Q8WXW3 757 aa10.35□□□□□ -0.75
HPS4-206ENST00000439453 GTF2F1P35269 517 aaKnown RBP eCLIP10.34□□□□□ -0.75
HPS4-206ENST00000439453 NFE2L2Q16236 605 aa10.34□□□□□ -0.75
HPS4-206ENST00000439453 IL17REQ8NFR9 667 aa10.34□□□□□ -0.75
HPS4-206ENST00000439453 TMX3Q96JJ7 454 aa10.34□□□□□ -0.75
HPS4-206ENST00000439453 IFT57Q9NWB7 429 aa10.34□□□□□ -0.75
HPS4-206ENST00000439453 RNMTO43148 476 aaKnown RBP10.34□□□□□ -0.75
HPS4-206ENST00000439453 NOLC1Q14978 699 aaKnown RBP eCLIP10.34□□□□□ -0.75
HPS4-206ENST00000439453 TWISTNBQ3B726 338 aaPredicted RBP10.34□□□□□ -0.75
HPS4-206ENST00000439453 SLC4A9Q96Q91 983 aa10.34□□□□□ -0.75
HPS4-206ENST00000439453 ERVV-2B6SEH9 535 aa10.34□□□□□ -0.75
HPS4-206ENST00000439453 ERC2O15083 957 aa10.34□□□□□ -0.75
HPS4-206ENST00000439453 ZNF830Q96NB3 372 aaPredicted RBP10.34□□□□□ -0.75
HPS4-206ENST00000439453 MBIPQ9NS73 344 aa10.34□□□□□ -0.75
HPS4-206ENST00000439453 PALLDQ8WX93 1383 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 MPNDQ8N594 471 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 ANKRD44Q8N8A2 993 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 PHF14O94880 888 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 NEK4P51957 841 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 TXNRD1Q16881 649 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 UVSSAQ2YD98 709 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 ATG3Q9NT62 314 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 SMARCA5O60264 1052 aaPredicted RBP10.33□□□□□ -0.76
HPS4-206ENST00000439453 CBX1P83916 185 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 ASAP1Q9ULH1 1129 aa10.33□□□□□ -0.76
HPS4-206ENST00000439453 ZNF853P0CG23 659 aa10.32□□□□□ -0.76
HPS4-206ENST00000439453 SF3B2Q13435 895 aaKnown RBP10.32□□□□□ -0.76
HPS4-206ENST00000439453 A0A0U1RQG5 324 aaPredicted RBP10.32□□□□□ -0.76
HPS4-206ENST00000439453 KCNQ4P56696 695 aa10.32□□□□□ -0.76
HPS4-206ENST00000439453 C8orf58Q8NAV2 365 aa10.32□□□□□ -0.76
HPS4-206ENST00000439453 FAM184AQ8NB25 1140 aa10.32□□□□□ -0.76
HPS4-206ENST00000439453 GTPBP4Q9BZE4 634 aaKnown RBP10.32□□□□□ -0.76
HPS4-206ENST00000439453 MCM2P49736 904 aa10.32□□□□□ -0.76
HPS4-206ENST00000439453 SLC52A2Q9HAB3 445 aa10.32□□□□□ -0.76
HPS4-206ENST00000439453 KIF3AQ9Y496 699 aa10.32□□□□□ -0.76
HPS4-206ENST00000439453 APBB1O00213 710 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 CUL4AQ13619 759 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 ZNF827Q17R98 1081 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 RPAP2Q8IXW5 612 aaPredicted RBP10.31□□□□□ -0.76
HPS4-206ENST00000439453 SYTL4Q96C24 671 aaPredicted RBP10.31□□□□□ -0.76
HPS4-206ENST00000439453 USP25Q9UHP3 1055 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 ATP10DQ9P241 1426 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 GADD45BO75293 160 aaPredicted RBP10.31□□□□□ -0.76
HPS4-206ENST00000439453 C1orf141Q5JVX7 400 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 PPP4R3BQ5MIZ7 849 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 C17orf53Q8N3J3 647 aaPredicted RBP10.31□□□□□ -0.76
HPS4-206ENST00000439453 TTC12Q9H892 705 aaPredicted RBP10.31□□□□□ -0.76
HPS4-206ENST00000439453 GNAT3A8MTJ3 354 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 ATP2B3Q16720 1220 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 AMIGO3Q86WK7 504 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 NFATC2IPQ8NCF5 419 aa10.31□□□□□ -0.76
HPS4-206ENST00000439453 CEP85Q6P2H3 762 aa10.3□□□□□ -0.76
HPS4-206ENST00000439453 AKT1S1Q96B36 256 aa10.3□□□□□ -0.76
HPS4-206ENST00000439453 SPTLC3Q9NUV7 552 aa10.3□□□□□ -0.76
HPS4-206ENST00000439453 FAM177BA6PVY3 158 aa10.3□□□□□ -0.76
HPS4-206ENST00000439453 ADCY5O95622 1261 aa10.3□□□□□ -0.76
HPS4-206ENST00000439453 FKBP5Q13451 457 aaPredicted RBP10.3□□□□□ -0.76
HPS4-206ENST00000439453 TMOD3Q9NYL9 352 aa10.3□□□□□ -0.76
HPS4-206ENST00000439453 BCORQ6W2J9 1755 aa10.3□□□□□ -0.76
HPS4-206ENST00000439453 INTS4Q96HW7 963 aaKnown RBP10.3□□□□□ -0.76
HPS4-206ENST00000439453 GDPD2Q9HCC8 539 aa10.3□□□□□ -0.76
HPS4-206ENST00000439453 ITPK1Q13572 414 aa10.29□□□□□ -0.76
HPS4-206ENST00000439453 DCTN1Q14203 1278 aa10.29□□□□□ -0.76
HPS4-206ENST00000439453 USP48Q86UV5 1035 aa10.29□□□□□ -0.76
HPS4-206ENST00000439453 FOXD4L6Q3SYB3 417 aaPredicted RBP10.29□□□□□ -0.76
HPS4-206ENST00000439453 FOXD4L3Q6VB84 417 aaPredicted RBP10.29□□□□□ -0.76
HPS4-206ENST00000439453 MCM10Q7L590 875 aa10.29□□□□□ -0.76
HPS4-206ENST00000439453 BCL2L12Q9HB09 334 aa10.29□□□□□ -0.76
HPS4-206ENST00000439453 SLC27A3Q5K4L6 730 aa10.29□□□□□ -0.76
HPS4-206ENST00000439453 PDGFDQ9GZP0 370 aaPredicted RBP10.29□□□□□ -0.76
HPS4-206ENST00000439453 GOLGB1Q14789 3259 aaKnown RBP10.29□□□□□ -0.76
HPS4-206ENST00000439453 KIF20AO95235 890 aa10.28□□□□□ -0.76
HPS4-206ENST00000439453 NOL8Q76FK4 1167 aaKnown RBP10.28□□□□□ -0.76
HPS4-206ENST00000439453 LINC00116Q8NCU8 138 aa10.28□□□□□ -0.76
HPS4-206ENST00000439453 SCN7AQ01118 1682 aa10.28□□□□□ -0.76
HPS4-206ENST00000439453 CCDC183Q5T5S1 534 aa10.28□□□□□ -0.76
HPS4-206ENST00000439453 TCHHQ07283 1943 aa10.28□□□□□ -0.76
HPS4-206ENST00000439453 HTATSF1O43719 755 aaKnown RBP10.27□□□□□ -0.76
HPS4-206ENST00000439453 LETM1O95202 739 aaPredicted RBP10.27□□□□□ -0.76
HPS4-206ENST00000439453 MCCP23508 829 aa10.27□□□□□ -0.76
HPS4-206ENST00000439453 CABP4P57796 275 aa10.27□□□□□ -0.76
HPS4-206ENST00000439453 PDCL2Q8N4E4 241 aa10.27□□□□□ -0.76
HPS4-206ENST00000439453 WDR33Q9C0J8 1336 aaKnown RBP10.27□□□□□ -0.77
HPS4-206ENST00000439453 LOC102724428A0A0B4J2F2 783 aa10.27□□□□□ -0.77
HPS4-206ENST00000439453 KCNQ3O43525 872 aa10.27□□□□□ -0.77
HPS4-206ENST00000439453 PDE1AP54750 535 aa10.27□□□□□ -0.77
HPS4-206ENST00000439453 SIK1P57059 783 aa10.27□□□□□ -0.77
HPS4-206ENST00000439453 SLC39A6Q13433 755 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms